mRNA_H-elongata_contig107414.611.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A6H5KV09_9PHAE (GH16 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV09_9PHAE) HSP 1 Score: 203 bits (516), Expect = 5.500e-58 Identity = 93/141 (65.96%), Postives = 114/141 (80.85%), Query Frame = 3
Query: 3 AVNEMDSILATIHYGGTYPDNLFAGCKQS---SGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
+VN+MD+IL TIHYGG +P NL AGC S +G+D+S D+HV+A+EW ++EM WYVDDQLFC RT W+S + Y+APFDAEFE++LNLAVGG+LPGR VDD A PATMLVDYVRVY+I+ V EAEPFLG P+CLPG
Sbjct: 148 SVNDMDTILGTIHYGGEWPMNLHAGCVSSQLGTGLDYSSDYHVYAVEWEQDEMRWYVDDQLFCQRTKWTSNVTSNEPYQAPFDAEFEIILNLAVGGSLPGRVVDDGALPATMLVDYVRVYDITTDVAEAEPFLGAPLCLPG 288
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A7Y2VM67_9GAMM (Glycoside hydrolase family 16 protein n=2 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A7Y2VM67_9GAMM) HSP 1 Score: 119 bits (297), Expect = 4.210e-29 Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query: 9 NEMDSILATIHYGGTYPDNLFAG--CKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEP 386
++ + IL TIHYGG +P+N F+G + SG F DFH FAIEW + E+ WYVDD L+ +T W+S + G++ APFD F LLLN+AVGG LPG +T FP ++VDYVRVY EA+P
Sbjct: 165 DDPEEILGTIHYGGEWPNNTFSGQEYRLDSG-SFHDDFHEFAIEWEEGEIRWYVDDVLYSTKTNWTS---NGGAFPAPFDKRFHLLLNMAVGGNLPGAPDANTLFPQELVVDYVRVYQ------EADP 282
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0YDK3_9GAMM (Beta-glucanase/Beta-glucan synthetase n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0YDK3_9GAMM) HSP 1 Score: 115 bits (289), Expect = 1.130e-28 Identity = 54/113 (47.79%), Postives = 72/113 (63.72%), Query Frame = 3
Query: 18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYN 356
+++ TIHYG +PDN+ G + D + DFH +A+EW + EM WYVDD L+ + W +T D + APFD F +LLN+AVGG PG +TAFPA M VDYVRVY+
Sbjct: 204 NTVYGTIHYGSVWPDNVATGSQYLVSSDATADFHDYALEWDETEMRWYVDDNLYAVQNAWGTTAAD---FPAPFDQPFYVLLNVAVGGDFPGAPDTETAFPAVMEVDYVRVYS 313
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A524K1E4_9GAMM (Glycoside hydrolase family 16 protein (Fragment) n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A524K1E4_9GAMM) HSP 1 Score: 115 bits (288), Expect = 1.690e-27 Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 3
Query: 18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE 383
+ I T+HYGG +P N F+G +G FH +AIEW + E+ WYVDDQL + W ST G + APFD F LLLN AVGG G D T FPAT ++DYVRVY + P A+
Sbjct: 191 EKIYNTLHYGGPFPANTFSGSGTFLPAGTAGSFHEYAIEWQRGEIRWYVDDQLVSTQNSWYSTA---GPFPAPFDVNFHLLLNFAVGGNFVGNPSDSTVFPATYVIDYVRVYALPVDPPLAQ 309
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: M5RMC1_9BACT (Glycoside hydrolase family 16 n=2 Tax=Rhodopirellula TaxID=265488 RepID=M5RMC1_9BACT) HSP 1 Score: 108 bits (271), Expect = 1.840e-27 Identity = 54/116 (46.55%), Postives = 72/116 (62.07%), Query Frame = 3
Query: 12 EMDSILATIHYGGTYPDNLFAGCKQS-SGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYN 356
E D +L T+HYG +P N ++G K F+ DFH F++ W + +++W +D + + +T WSST G + APFD EF LLLN+AVGG G D T FPA MLVDYVRVY
Sbjct: 57 EPDEVLGTLHYGDVWPRNAYSGDKYKLPNGSFADDFHTFSVVWKEGQIDWLIDGKKYQTQTKWSSTG---GEFPAPFDQEFHLLLNVAVGGNFLGPPNDSTPFPAKMLVDYVRVYQ 169
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A3M2CPB4_9BACT (Glycosyl hydrolase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CPB4_9BACT) HSP 1 Score: 115 bits (287), Expect = 1.960e-27 Identity = 59/140 (42.14%), Postives = 82/140 (58.57%), Query Frame = 3
Query: 3 AVNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRT--MWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
+VN D I T+H+G +P+N G ++G DFS +FH +AIEW +++ WY+D QL+ + W S G+ RAPFD EF LLLN+AVGG PG + +P T+ VDY+RV+ E PF G P +PG
Sbjct: 149 SVNFADRIYGTLHFGSVWPNNASTGGSFANGTDFSQNFHDYAIEWDPDQIRWYIDGQLYSTKNADQWFSAASS-GNARAPFDHEFHLLLNVAVGGAFPGNPDGSSQWPQTLEVDYIRVFRR-----EQAPFGGTPHAIPG 282
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A7Y1TI90_9GAMM (Family 16 glycosylhydrolase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1TI90_9GAMM) HSP 1 Score: 115 bits (289), Expect = 2.520e-27 Identity = 61/127 (48.03%), Postives = 73/127 (57.48%), Query Frame = 3
Query: 9 NEMDSILATIHYGGTYPDNLFAGCK--QSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE 383
+E D+I TIHYG ++P NLF+ + S F DFH FAIEW E+ WYVD F R W ST G + APFD +F LLLNLAVGG LPG T FP ++DYVRVY + P E
Sbjct: 168 DEPDTIFGTIHYGASFPGNLFSSTEFTLSGPPSFHDDFHTFAIEWENGEIRWYVDGVQFASRDSWFSTG---GPFPAPFDVDFHLLLNLAVGGNLPGPPDGTTVFPQEYVIDYVRVYQVPNDKPVVE 291
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A812XTA4_9DINO (GlcA protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812XTA4_9DINO) HSP 1 Score: 114 bits (285), Expect = 3.550e-27 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 3
Query: 3 AVNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLF--CHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAEPFLGLPVCLPG 416
++N DS+ TIHYG +P+N G ++G+D+S DFHVF+IEW +++ WY+D Q + + W S+ G+ RAPFD +F LLLN+AVGG PG ++P T+ VDYVRVY PF P +PG
Sbjct: 138 SINTADSMHGTIHYGNNWPNNQSNGGSLNNGIDYSDDFHVFSIEWEPDQIRWYIDGQQYHSVNSNEWFSSAAP-GNVRAPFDTQFHLLLNVAVGGNWPGNPNGSASYPQTLEVDYVRVYQ-----QIQGPFGDQPAEIPG 271
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: UPI0019B0D815 (family 16 glycosylhydrolase n=1 Tax=Saccharospirillum salsuginis TaxID=418750 RepID=UPI0019B0D815) HSP 1 Score: 112 bits (280), Expect = 6.920e-27 Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 3
Query: 18 DSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAV 368
+ + T+HYGG++PDN+++G + + +FH +A+EW E+ WYVD L+ +T W S D G+Y APFD +F LLLN+AVGG PG T FP M VDYVRVY A+
Sbjct: 160 NDVHGTLHYGGSWPDNVYSGQVYTPSTSVTDNFHTYAVEWEPGEIRWYVDGLLYQTQTEWYS---DNGAYPAPFDQDFHLLLNVAVGGDWPGDPDSTTVFPTAMQVDYVRVYQDPAI 273
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Match: A0A368NMN2_9GAMM (Uncharacterized protein n=3 Tax=Corallincola TaxID=1775176 RepID=A0A368NMN2_9GAMM) HSP 1 Score: 114 bits (285), Expect = 8.660e-27 Identity = 60/141 (42.55%), Postives = 82/141 (58.16%), Query Frame = 3
Query: 6 VNEMDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVDDQLFCHRTMWSSTLEDLGSYRAPFDAEFELLLNLAVGGTLPGRFVDDTAFPATMLVDYVRVYNISAVVPEAE----PFLGLPVCLPG 416
V+ +SI T+HYGG +PDN +G K + + + FH +++EW E + WY+D +L+ +T W S + GSY APFD F L+LN+AVGG PG +T FP M VDYVRVY P E P+ G V +PG
Sbjct: 462 VDGNNSIHGTLHYGGKWPDNTHSGDKVTPATNVATQFHTYSVEWEPEAIRWYIDGKLYQTQTQWWS---EGGSYPAPFDQRFHLILNVAVGGNWPGSPNQNTVFPQIMEVDYVRVYEKGQQQPGDECDSLPYGGRAVGIPG 599 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107414.611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107414.611.1 >prot_H-elongata_contig107414.611.1 ID=prot_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp MDSILATIHYGGTYPDNLFAGCKQSSGMDFSGDFHVFAIEWLKEEMNWYVback to top mRNA from alignment at H-elongata_contig107414:1059..2158- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107414.611.1 ID=mRNA_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1100bp|location=Sequence derived from alignment at H-elongata_contig107414:1059..2158- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107414:1059..2158- >mRNA_H-elongata_contig107414.611.1 ID=mRNA_H-elongata_contig107414.611.1|Name=mRNA_H-elongata_contig107414.611.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig107414:1059..2158- (Himanthalia elongata Himel1 dioecious)back to top |