mRNA_H-elongata_contig107328.605.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107328.605.1
Unique NamemRNA_H-elongata_contig107328.605.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: D7FZI9_ECTSI (BUB1 N-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI9_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 6.260e-32
Identity = 58/81 (71.60%), Postives = 70/81 (86.42%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGID-RRAQPMDIILKRQREFLRRMRRQWINSQ 240
            A+HL+NA+DLFKFLYKKGIG   AHFW+GWAL+AEN G YP+ EKLYVKGI+ RRA+P+D++ KRQ  F+RRMRR WINSQ
Sbjct:  154 ATHLSNAEDLFKFLYKKGIGGKHAHFWVGWALYAENAGNYPMAEKLYVKGIEHRRAEPLDVLKKRQAHFMRRMRRHWINSQ 234          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: W7U3F2_9STRA (Protein serine threonine kinase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U3F2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.250e-15
Identity = 37/82 (45.12%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINSQEE 246
            A  L++  ++FKFL+KK IG+T A FW  WA  AE  G + L +KLY KGI+  A P++++ +R+  F RRM R W+   EE
Sbjct:  123 ADRLSSPGEIFKFLHKKKIGTTQALFWAAWAFVAEKSGNFSLADKLYTKGIELHALPIELLAERRHHFQRRMSRHWLRLNEE 204          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A7S2ENJ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ENJ0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.730e-15
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   25 DLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINS 237
            D+FKFL K+ IGS  A FWI WA  AE  G Y   EK++VKG+ +RA+P+  +  RQ++F RRM R W+N+
Sbjct:  154 DIFKFLNKQKIGSVTALFWIAWAWVAEKGGDYAFAEKIFVKGLSKRAKPVKQLEARQKQFRRRMSRHWLNN 224          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A024GD52_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GD52_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.880e-13
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWIN 234
            A  ++N +D+FK+LY+ GIG  ++ +++GWA   E++GKY    K+Y+K I ++A+P D I ++   F RRM  +WI+
Sbjct:  575 ADMVSNPNDIFKYLYRNGIGDQVSLYYVGWAWVLESLGKYSYAHKVYMKAIKKKAEPQDFIQQKYAAFQRRMNSRWIS 652          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A835ZDF8_9STRA (BUB1 N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDF8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.520e-12
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINS 237
            AS+L+NAD+LF++LYK  IG+  A FW+ WA  AE    Y + +KL  KG  R     D++ +R  EF RR+R  W  S
Sbjct:  122 ASYLSNADELFRYLYKNEIGTGCALFWVSWAWVAEASKDYVMADKLLAKGAGRARDDRDLVKRRHAEFSRRVRSLWARS 200          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A7S2WMM4_9STRA (Hypothetical protein (Fragment) n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WMM4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 6.160e-12
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINSQEE 246
            A  L N   +FK+L +  IG  LA ++I  A  AE    +PL +K Y  G++++A+P+D++ KR REF RRM R+W+N + E
Sbjct:  113 ADLLDNPSSVFKYLRENKIGDKLALYYIATAWTAERRNDFPLADKAYTVGLEKKAEPIDLLQKRHREFQRRMSRRWLNQEAE 194          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: B8BTH1_THAPS (BUB1 N-terminal domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTH1_THAPS)

HSP 1 Score: 69.3 bits (168), Expect = 6.330e-12
Identity = 32/79 (40.51%), Postives = 48/79 (60.76%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINS 237
            A   +N  ++FK + K  +G+ +A FW+ WA  AE    YP  EK++ KG+   A+P   +  RQ++FLRRM R W+NS
Sbjct:  142 ADKTSNPSEVFKLMSKIKVGTNVALFWVAWAWVAEKSTDYPFTEKIFQKGLSVGAEPKKFLEDRQKQFLRRMSRHWLNS 220          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A024FZN1_9STRA (BUB1 N-terminal domain-containing protein n=3 Tax=Albugo candida TaxID=65357 RepID=A0A024FZN1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.590e-11
Identity = 30/81 (37.04%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINSQE 243
            A+ ++N  D+FK+LY+  IG  +A F++GWAL  E +G +    K+Y+K + ++AQP  ++ ++ ++F RRM R W+   E
Sbjct:   40 ANLVSNPKDIFKYLYQNKIGQHVALFYVGWALVLERLGNHAQAHKIYLKAVQKKAQPSQMLDQKFQDFQRRMSRHWLRMNE 120          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A1Z5K3F0_FISSO (Checkpoint serine/threonine-protein kinase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K3F0_FISSO)

HSP 1 Score: 66.2 bits (160), Expect = 7.770e-11
Identity = 27/71 (38.03%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   25 DLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINS 237
            ++F++LY++ IG+ +A FW  WA  AE    Y   +K++ KG+ ++A P++ + +R ++F RRM R W+NS
Sbjct:  118 EIFQYLYQQNIGAQVAIFWAAWAFVAEKEQDYAFADKIFNKGLSKKAAPLNYLQQRHKQFQRRMSRYWLNS 188          
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Match: A0A1Z5JCG6_FISSO (Checkpoint serine/threonine-protein kinase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCG6_FISSO)

HSP 1 Score: 66.2 bits (160), Expect = 7.770e-11
Identity = 27/71 (38.03%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   25 DLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKGIDRRAQPMDIILKRQREFLRRMRRQWINS 237
            ++F++LY++ IG+ +A FW  WA  AE    Y   +K++ KG+ ++A P++ + +R ++F RRM R W+NS
Sbjct:  118 EIFQYLYQQNIGAQVAIFWAAWAFVAEKEQDYAFADKIFNKGLSKKAAPLNYLQQRHKQFQRRMSRYWLNS 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107328.605.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZI9_ECTSI6.260e-3271.60BUB1 N-terminal domain-containing protein n=1 Tax=... [more]
W7U3F2_9STRA1.250e-1545.12Protein serine threonine kinase n=2 Tax=Nannochlor... [more]
A0A7S2ENJ0_9STRA4.730e-1550.70Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A024GD52_9STRA3.880e-1339.74Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A835ZDF8_9STRA2.520e-1244.30BUB1 N-terminal domain-containing protein n=1 Tax=... [more]
A0A7S2WMM4_9STRA6.160e-1241.46Hypothetical protein (Fragment) n=2 Tax=labyrinthu... [more]
B8BTH1_THAPS6.330e-1240.51BUB1 N-terminal domain-containing protein (Fragmen... [more]
A0A024FZN1_9STRA1.590e-1137.04BUB1 N-terminal domain-containing protein n=3 Tax=... [more]
A0A1Z5K3F0_FISSO7.770e-1138.03Checkpoint serine/threonine-protein kinase n=1 Tax... [more]
A0A1Z5JCG6_FISSO7.770e-1138.03Checkpoint serine/threonine-protein kinase n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107328contigH-elongata_contig107328:126..1344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.9e-27
Seed eggNOG ortholog2880.D7FZI9
KEGG koko:K02178
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04914,map04110,map04111,map04113,map04114,map04914
EggNOG free text desc.meiotic sister chromatid cohesion, centromeric
EggNOG OGsKOG1166@1,KOG1166@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.541704-CDS-H-elongata_contig107328:125..2591622929603.541704-CDS-H-elongata_contig107328:125..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107328 126..259 +
1691679087.8655946-CDS-H-elongata_contig107328:125..2591691679087.8655946-CDS-H-elongata_contig107328:125..259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107328 126..259 +
1622929603.5668738-CDS-H-elongata_contig107328:1232..13441622929603.5668738-CDS-H-elongata_contig107328:1232..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107328 1233..1344 +
1691679087.8791165-CDS-H-elongata_contig107328:1232..13441691679087.8791165-CDS-H-elongata_contig107328:1232..1344Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107328 1233..1344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107328.605.1prot_H-elongata_contig107328.605.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107328 126..1344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107328.605.1

>prot_H-elongata_contig107328.605.1 ID=prot_H-elongata_contig107328.605.1|Name=mRNA_H-elongata_contig107328.605.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
ASHLTNADDLFKFLYKKGIGSTLAHFWIGWALHAENVGKYPLVEKLYVKG
IDRRAQPMDIILKRQREFLRRMRRQWINSQEE
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mRNA from alignment at H-elongata_contig107328:126..1344+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107328.605.1 ID=mRNA_H-elongata_contig107328.605.1|Name=mRNA_H-elongata_contig107328.605.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1219bp|location=Sequence derived from alignment at H-elongata_contig107328:126..1344+ (Himanthalia elongata Himel1 dioecious)
GCTTCGCACCTTACCAACGCTGACGATCTTTTCAAGTTCCTTTACAAAAA GGGCATCGGATCCACGCTGGCACATTTCTGGATCGGCTGGGCTCTTCACG CGGAGAACGTCGGCAAATACCCTTTGGTGGAAAAGTGAGACCGTTTTACC CTTTGGTGGAAAAGTGAGACCGTTTTACCCTTTGGTGGAAAAGTGAGACC GTTTTTCTTCGTCTTTTTTGTTTTTTTCGTTCTTTTTTCGTTCTTTCTTT TACTTTCTGCTTCCCTTTTATATCCACGCATTTCTCTGCTTTTTTCCCCG GTTTTATCCGTAGGTATATCTCGCGATATATATTTTCCCCCCTTTTATAA CCTTTTCATTTTTTAATTCTATGTTTCTGGCCGGTTTCTCCTCCCTGGTA CATTTTTTTTGCAGCGTATATAAGTGTCCAGGGAACCAACCTATCGTAGA ACTAGTACATTTTTTGCCAATTTCTTTTTGTCCTTGTTTCTATTTACAAA ATCGATTGTGTTCGAGTAAAAAAATCAAATCGAATGTAAACATTACAGAG CAATATTCTTAGGTAGTATACAAAAAATGAATGTTCTTAATTATTTAATT TTTAATATATTTAAAAATAATTTATTTTGAACTTAACCCCTATGGAACCT CGATCTGTTTTTTACACACTAAGTTCAATATAAAACTTGAAATCCAGTCC CTAAAGAGTTAAATCCAATCCCGAAAGAGTTAAGTCACCAAAAGTGGCTA TTATATTTTTAAAATATCGTGTGGTATCTAAGGGGACATATACCTTTGTA TCTTTTTGCTGTTCTCCATTGTAAATATATTTTGTTAAGTTGTTATCATC GGTAATTCAAAAAGCTTTTGTTGTTTGGTAGAAGCTCAAATGAGTCAAAT GAGAGTACATTTTCTCTTCTTGCTAAGTTGTTTTATTTTTTCGCATAATA TTGTTTTGACATATAAACCCATTTATTTTTAAAACGTTTCGATCGTTTTT TAATTATTTTTATCGTCAAAAAATAACAATAACAATAATAATACTAATGT TGCCAGCACTTTATTTTTATTTTTTATTTTTAACATTGAATCACGCCGCG CGTGTAGGCTGTACGTGAAAGGAATCGACCGGAGGGCTCAGCCAATGGAC ATCATCTTGAAGCGCCAGAGAGAGTTTTTGCGCCGAATGCGCCGTCAGTG GATCAACAGCCAAGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig107328:126..1344+

>mRNA_H-elongata_contig107328.605.1 ID=mRNA_H-elongata_contig107328.605.1|Name=mRNA_H-elongata_contig107328.605.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig107328:126..1344+ (Himanthalia elongata Himel1 dioecious)
GCTTCGCACCTTACCAACGCTGACGATCTTTTCAAGTTCCTTTACAAAAA
GGGCATCGGATCCACGCTGGCACATTTCTGGATCGGCTGGGCTCTTCACG
CGGAGAACGTCGGCAAATACCCTTTGGTGGAAAAGCTTCGCACCTTACCA
ACGCTGACGATCTTTTCAAGTTCCTTTACAAAAAGGGCATCGGATCCACG
CTGGCACATTTCTGGATCGGCTGGGCTCTTCACGCGGAGAACGTCGGCAA
ATACCCTTTGGTGGAAAAGCTGTACGTGAAAGGAATCGACCGGAGGGCTC
AGCCAATGGACATCATCTTGAAGCGCCAGAGAGAGTTTTTGCGCCGAATG
CGCCGTCAGTGGATCAACAGCCAAGAAGAGGCTGTACGTGAAAGGAATCG
ACCGGAGGGCTCAGCCAATGGACATCATCTTGAAGCGCCAGAGAGAGTTT
TTGCGCCGAATGCGCCGTCAGTGGATCAACAGCCAAGAAGAG
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