mRNA_H-elongata_contig107279.599.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: D7FH17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH17_ECTSI) HSP 1 Score: 228 bits (580), Expect = 3.270e-70 Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1
Query: 1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLISG 390
+ + G SWFEQ RRLAKLNLQAHQSAMARSDEYVLEALL FDKLGVVVHELLAIEAWKEF+LPRLLETERA SGKCTMRLYF LYHEATL+N L++ +FHGH+CEQAGGDLL+EL DYCARKMTMLISG
Sbjct: 58 IEEIGNSSWFEQNRRLAKLNLQAHQSAMARSDEYVLEALLTFDKLGVVVHELLAIEAWKEFVLPRLLETERARSGKCTMRLYFTLYHEATLANLLQVALFHGHICEQAGGDLLMELADYCARKMTMLISG 187
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A835ZG21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG21_9STRA) HSP 1 Score: 155 bits (391), Expect = 8.000e-43 Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1
Query: 1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLIS 387
V G +W +Q++RL KLNLQAHQSAMAR+DEYVLEAL F K+ ++V ELL +EAWKEF LP LL++ R SG+C MRLYF LYHEAT++N LE ++ H C +AG D LV+L DYC RK+ +L S
Sbjct: 56 VTDVGSSAWLDQHQRLVKLNLQAHQSAMARADEYVLEALQTFGKVPLLVRELLLVEAWKEFALPDLLKSPRLRSGRCNMRLYFTLYHEATVANLLEAALYRRHACAEAG-DALVDLVDYCVRKIVLLNS 183
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A482SG05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG05_9ARCH) HSP 1 Score: 137 bits (344), Expect = 5.690e-36 Identity = 67/128 (52.34%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 7 QTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLISG 390
+ G R+W EQ+R++ KLNLQAH +A++ SDEYV+EA+L F+K+ V++H+LL IEAWKE + P L E SG+ MRLYF+LYHEAT+ N LEI +++ H E AGG++++E+ DY ARK+ L +G
Sbjct: 52 EVGSRAWMEQHRKMEKLNLQAHHNALSNSDEYVMEAILTFNKIPVLIHDLLLIEAWKESVYPLLKEEL---SGRNNMRLYFILYHEATVVNMLEIFLYYKHFVE-AGGEVMIEVIDYVARKLIRLNNG 175
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: UPI000D1C41A9 (zinc finger MYND domain-containing protein 10-like isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C41A9) HSP 1 Score: 124 bits (310), Expect = 8.820e-33 Identity = 60/127 (47.24%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
V++ G +W +Q+R+L KLNLQAH + +A DE+++EALL F+KLGV++HELLAIE WKE +LP +++ AG T+RL + Y E T+ EI++FH C+ G L+EL DYC RK+ L
Sbjct: 32 VKEVGCPAWMKQHRKLEKLNLQAHYNTIAHCDEFIMEALLSFEKLGVLIHELLAIEIWKEKVLPHIMK-HLAGMSS-TIRLSLIFYQEVTVIKLFEIMLFHKEACKALGSSNLLELVDYCYRKLVYL 156
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A662XZU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZU6_9STRA) HSP 1 Score: 120 bits (302), Expect = 2.740e-32 Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 25 WFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
W E + + KLNLQAHQSA + D +V+E+LL FDK V+ LL++E WK +LP L ++ + +RLYFV+YHEATL+N LE+ FH HV E DLL+EL DYC RK++ L+
Sbjct: 28 WLEHHHAMEKLNLQAHQSAQRKQDNFVVESLLTFDKFPTVLSNLLSLELWKANVLPLLRCQDQDAAS---LRLYFVVYHEATLTNLLEVAFFHEHVVESLTDDLLLELVDYCMRKLSWLV 144
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1CRR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRR6_9STRA) HSP 1 Score: 127 bits (320), Expect = 3.340e-32 Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 1
Query: 1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLE---TERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
VR+ G +W Q+ L K NLQAH +A D +V+EA+L FDK+ V++HEL+A+EAW+EF+ P L ER G +RLY+ YHEATL N LE+ ++H + CE A GD L++L DYC RK++ L+
Sbjct: 42 VREVGSSAWMRQHEALEKANLQAHANARGNRDPFVMEAMLTFDKMTVLIHELMAVEAWREFVFPLLRSGGAVERNG-----LRLYYTFYHEATLVNLLEVFLYHDYACE-AAGDALIDLVDYCCRKVSWLV 166
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A662XY08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY08_9STRA) HSP 1 Score: 121 bits (304), Expect = 9.010e-32 Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 25 WFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
W E + + KLNLQAHQSA + D +V+E+LL FDK V+ LL++E WK +LP L ++ + +RLYFV+YHEATL+N LE+ FH HV E DLL+EL DYC RK++ L+
Sbjct: 99 WLEHHHAMEKLNLQAHQSAQRKQDNFVVESLLTFDKFPTVLSNLLSLELWKANVLPLLRCQDQDAAS---LRLYFVVYHEATLTNLLEVAFFHEHVVESLADDLLLELVDYCMRKLSWLV 215
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A1Y1IFK0_KLENI (MYND-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFK0_KLENI) HSP 1 Score: 125 bits (313), Expect = 2.400e-31 Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
V G +W +Q+ L KLN+QAH +A+A +DE+V+ AL+ +DKL ++VHELL IE WK+ + P + G G ++ +Y VL+HEATL+N LE+ +FH CE AG D L+EL D+C RKM L
Sbjct: 37 VDDVGSMAWLQQHDVLEKLNIQAHHNALAHADEFVMAALVSYDKLALLVHELLVIEVWKDQVYPLIAAELAQGGG--SINVYLVLHHEATLANLLEVALFHREACEAAGEDALLELADFCHRKMVYL 161
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1UJ48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ48_9STRA) HSP 1 Score: 119 bits (299), Expect = 2.000e-30 Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1
Query: 22 SWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLIS 387
+W Q++ + +LN+QAH SA A +DE+V+EA+L F+KL +V ELL IEAWKE LP+++ + G +MR YFVLYHE L NFLE +++H + A GD +EL DYCARK+T L S
Sbjct: 62 AWMAQHQNIQRLNMQAHASAKANADEFVVEAVLTFEKLPTLVRELLLIEAWKEQALPKIIS--KVDKGPASMRAYFVLYHEVVLCNFLETLLYHDYGVA-ACGDHALELVDYCARKLTRLNS 180
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1T1I3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1I3_9CHLO) HSP 1 Score: 119 bits (297), Expect = 2.480e-30 Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 13 GLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
G W EQ+ + KLNLQAH +A SDE+V+E+L+ FDK+ V+VHELLAIE WK +LP L++ + ++ Y +LYHEAT++N LE+ +FH H E D ++EL D+C RKM L
Sbjct: 25 GSAPWMEQHDWVEKLNLQAHHNAQTHSDEFVMESLVSFDKMSVLVHELLAIEVWKGKVLPHLMK--HLANKVDSVTSYLLLYHEATVANLLEVSLFHSHAAEACSEDAMLELVDWCHRKMIYL 145 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig107279.599.1 >prot_H-elongata_contig107279.599.1 ID=prot_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHback to top mRNA from alignment at H-elongata_contig107279:11..1095- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig107279.599.1 ID=mRNA_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1085bp|location=Sequence derived from alignment at H-elongata_contig107279:11..1095- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig107279:11..1095- >mRNA_H-elongata_contig107279.599.1 ID=mRNA_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig107279:11..1095- (Himanthalia elongata Himel1 dioecious)back to top |