mRNA_H-elongata_contig107279.599.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig107279.599.1
Unique NamemRNA_H-elongata_contig107279.599.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: D7FH17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH17_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 3.270e-70
Identity = 110/130 (84.62%), Postives = 119/130 (91.54%), Query Frame = 1
Query:    1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLISG 390
            + + G  SWFEQ RRLAKLNLQAHQSAMARSDEYVLEALL FDKLGVVVHELLAIEAWKEF+LPRLLETERA SGKCTMRLYF LYHEATL+N L++ +FHGH+CEQAGGDLL+EL DYCARKMTMLISG
Sbjct:   58 IEEIGNSSWFEQNRRLAKLNLQAHQSAMARSDEYVLEALLTFDKLGVVVHELLAIEAWKEFVLPRLLETERARSGKCTMRLYFTLYHEATLANLLQVALFHGHICEQAGGDLLMELADYCARKMTMLISG 187          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A835ZG21_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG21_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.000e-43
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLIS 387
            V   G  +W +Q++RL KLNLQAHQSAMAR+DEYVLEAL  F K+ ++V ELL +EAWKEF LP LL++ R  SG+C MRLYF LYHEAT++N LE  ++  H C +AG D LV+L DYC RK+ +L S
Sbjct:   56 VTDVGSSAWLDQHQRLVKLNLQAHQSAMARADEYVLEALQTFGKVPLLVRELLLVEAWKEFALPDLLKSPRLRSGRCNMRLYFTLYHEATVANLLEAALYRRHACAEAG-DALVDLVDYCVRKIVLLNS 183          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A482SG05_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SG05_9ARCH)

HSP 1 Score: 137 bits (344), Expect = 5.690e-36
Identity = 67/128 (52.34%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    7 QTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLISG 390
            + G R+W EQ+R++ KLNLQAH +A++ SDEYV+EA+L F+K+ V++H+LL IEAWKE + P L E     SG+  MRLYF+LYHEAT+ N LEI +++ H  E AGG++++E+ DY ARK+  L +G
Sbjct:   52 EVGSRAWMEQHRKMEKLNLQAHHNALSNSDEYVMEAILTFNKIPVLIHDLLLIEAWKESVYPLLKEEL---SGRNNMRLYFILYHEATVVNMLEIFLYYKHFVE-AGGEVMIEVIDYVARKLIRLNNG 175          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: UPI000D1C41A9 (zinc finger MYND domain-containing protein 10-like isoform X1 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C41A9)

HSP 1 Score: 124 bits (310), Expect = 8.820e-33
Identity = 60/127 (47.24%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
            V++ G  +W +Q+R+L KLNLQAH + +A  DE+++EALL F+KLGV++HELLAIE WKE +LP +++   AG    T+RL  + Y E T+    EI++FH   C+  G   L+EL DYC RK+  L
Sbjct:   32 VKEVGCPAWMKQHRKLEKLNLQAHYNTIAHCDEFIMEALLSFEKLGVLIHELLAIEIWKEKVLPHIMK-HLAGMSS-TIRLSLIFYQEVTVIKLFEIMLFHKEACKALGSSNLLELVDYCYRKLVYL 156          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A662XZU6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZU6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.740e-32
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   25 WFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
            W E +  + KLNLQAHQSA  + D +V+E+LL FDK   V+  LL++E WK  +LP L   ++  +    +RLYFV+YHEATL+N LE+  FH HV E    DLL+EL DYC RK++ L+
Sbjct:   28 WLEHHHAMEKLNLQAHQSAQRKQDNFVVESLLTFDKFPTVLSNLLSLELWKANVLPLLRCQDQDAAS---LRLYFVVYHEATLTNLLEVAFFHEHVVESLTDDLLLELVDYCMRKLSWLV 144          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1CRR6_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRR6_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.340e-32
Identity = 62/131 (47.33%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLE---TERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
            VR+ G  +W  Q+  L K NLQAH +A    D +V+EA+L FDK+ V++HEL+A+EAW+EF+ P L      ER G     +RLY+  YHEATL N LE+ ++H + CE A GD L++L DYC RK++ L+
Sbjct:   42 VREVGSSAWMRQHEALEKANLQAHANARGNRDPFVMEAMLTFDKMTVLIHELMAVEAWREFVFPLLRSGGAVERNG-----LRLYYTFYHEATLVNLLEVFLYHDYACE-AAGDALIDLVDYCCRKVSWLV 166          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A662XY08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XY08_9STRA)

HSP 1 Score: 121 bits (304), Expect = 9.010e-32
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   25 WFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLI 384
            W E +  + KLNLQAHQSA  + D +V+E+LL FDK   V+  LL++E WK  +LP L   ++  +    +RLYFV+YHEATL+N LE+  FH HV E    DLL+EL DYC RK++ L+
Sbjct:   99 WLEHHHAMEKLNLQAHQSAQRKQDNFVVESLLTFDKFPTVLSNLLSLELWKANVLPLLRCQDQDAAS---LRLYFVVYHEATLTNLLEVAFFHEHVVESLADDLLLELVDYCMRKLSWLV 215          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A1Y1IFK0_KLENI (MYND-type domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IFK0_KLENI)

HSP 1 Score: 125 bits (313), Expect = 2.400e-31
Identity = 60/127 (47.24%), Postives = 85/127 (66.93%), Query Frame = 1
Query:    1 VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
            V   G  +W +Q+  L KLN+QAH +A+A +DE+V+ AL+ +DKL ++VHELL IE WK+ + P +      G G  ++ +Y VL+HEATL+N LE+ +FH   CE AG D L+EL D+C RKM  L
Sbjct:   37 VDDVGSMAWLQQHDVLEKLNIQAHHNALAHADEFVMAALVSYDKLALLVHELLVIEVWKDQVYPLIAAELAQGGG--SINVYLVLHHEATLANLLEVALFHREACEAAGEDALLELADFCHRKMVYL 161          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1UJ48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJ48_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.000e-30
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 1
Query:   22 SWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTMLIS 387
            +W  Q++ + +LN+QAH SA A +DE+V+EA+L F+KL  +V ELL IEAWKE  LP+++   +   G  +MR YFVLYHE  L NFLE +++H +    A GD  +EL DYCARK+T L S
Sbjct:   62 AWMAQHQNIQRLNMQAHASAKANADEFVVEAVLTFEKLPTLVRELLLIEAWKEQALPKIIS--KVDKGPASMRAYFVLYHEVVLCNFLETLLYHDYGVA-ACGDHALELVDYCARKLTRLNS 180          
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Match: A0A7S1T1I3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T1I3_9CHLO)

HSP 1 Score: 119 bits (297), Expect = 2.480e-30
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 1
Query:   13 GLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVHELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMFHGHVCEQAGGDLLVELTDYCARKMTML 381
            G   W EQ+  + KLNLQAH +A   SDE+V+E+L+ FDK+ V+VHELLAIE WK  +LP L++     +   ++  Y +LYHEAT++N LE+ +FH H  E    D ++EL D+C RKM  L
Sbjct:   25 GSAPWMEQHDWVEKLNLQAHHNAQTHSDEFVMESLVSFDKMSVLVHELLAIEVWKGKVLPHLMK--HLANKVDSVTSYLLLYHEATVANLLEVSLFHSHAAEACSEDAMLELVDWCHRKMIYL 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig107279.599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH17_ECTSI3.270e-7084.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZG21_9STRA8.000e-4358.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482SG05_9ARCH5.690e-3652.34Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI000D1C41A98.820e-3347.24zinc finger MYND domain-containing protein 10-like... [more]
A0A662XZU6_9STRA2.740e-3249.17Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S1CRR6_9STRA3.340e-3247.33Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A662XY08_9STRA9.010e-3249.17Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A1Y1IFK0_KLENI2.400e-3147.24MYND-type domain-containing protein n=1 Tax=Klebso... [more]
A0A7S1UJ48_9STRA2.000e-3050.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1T1I3_9CHLO2.480e-3047.15Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig107279contigH-elongata_contig107279:11..1095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.6
Seed ortholog evalue8.6e-58
Seed eggNOG ortholog2880.D7FH17
Preferred nameZMYND10
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007600,GO:0007605,GO:0008150,GO:0008270,GO:0009987,GO:0010638,GO:0015630,GO:0016020,GO:0016043,GO:0016324,GO:0019230,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0031344,GO:0031346,GO:0032501,GO:0033043,GO:0034451,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0036477,GO:0040011,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044458,GO:0044459,GO:0044464,GO:0044782,GO:0045177,GO:0045724,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050884,GO:0050905,GO:0050954,GO:0051128,GO:0051130,GO:0051179,GO:0051674,GO:0060271,GO:0060491,GO:0065003,GO:0065007,GO:0070286,GO:0070925,GO:0071840,GO:0071944,GO:0097458,GO:0097722,GO:0098590,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:1902017,GO:1902115,GO:1902117,GO:1905503,GO:1905505
EggNOG free text desc.positive regulation of motile cilium assembly
EggNOG OGs28JQ5@1,2QS3F@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_003150.1
Exons2
Model size393
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929603.0795062-CDS-H-elongata_contig107279:10..2231622929603.0795062-CDS-H-elongata_contig107279:10..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107279 11..223 -
1691679087.6163888-CDS-H-elongata_contig107279:10..2231691679087.6163888-CDS-H-elongata_contig107279:10..223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107279 11..223 -
1622929603.0936215-CDS-H-elongata_contig107279:915..10951622929603.0936215-CDS-H-elongata_contig107279:915..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107279 916..1095 -
1691679087.6262572-CDS-H-elongata_contig107279:915..10951691679087.6262572-CDS-H-elongata_contig107279:915..1095Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig107279 916..1095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig107279.599.1prot_H-elongata_contig107279.599.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig107279 11..1095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig107279.599.1

>prot_H-elongata_contig107279.599.1 ID=prot_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
VRQTGLRSWFEQYRRLAKLNLQAHQSAMARSDEYVLEALLMFDKLGVVVH
ELLAIEAWKEFILPRLLETERAGSGKCTMRLYFVLYHEATLSNFLEIVMF
HGHVCEQAGGDLLVELTDYCARKMTMLISG*
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mRNA from alignment at H-elongata_contig107279:11..1095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig107279.599.1 ID=mRNA_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1085bp|location=Sequence derived from alignment at H-elongata_contig107279:11..1095- (Himanthalia elongata Himel1 dioecious)
GTACGGCAAACGGGCCTTCGTAGCTGGTTCGAGCAGTATCGGCGGTTGGC CAAGCTCAACCTGCAGGCACACCAGAGCGCAATGGCTCGCTCGGACGAGT ACGTGCTGGAGGCTCTCTTGATGTTCGACAAGCTGGGGGTCGTCGTGCAC GAGCTGCTCGCCATCGAGGCGTGGAAGGAGGTAGGCGTACGCCCACACTC TGTTGGAGCATGACGTTAACCACATCCCGCCATTTGATGTGCCGCTCGGA TCGGCCAACGGCTGGCTGACTTGACCCAGGCAATAGATCGGCTGGTAATC GCTTCCGGTTTCGAGCGAAAAACGAAAAACATATTCGCAGTATTTCTTTT CATTGACCTACCTCCCTCCCCATACGTTAATACGTTCATACGTCCATACG TTCATACGTTACGGCGCTCCCCCGCACGCTTATCGAAGCGGATAAAAATA TGTGATGACCTTCCGCCCACCTGATTTCAGGAATGTTAATCTTTGGCCGC GACGATTACCTACAGCTGCGGGTCTAACAGCCCAGTCAGGTCCAGGTGTT GCCTAAGCTTTCTGTTGGAGCAAGTGTAGGACTATTCCGTCAGCGCCGAT TGATTGTGGCGATTCAGCGCAGCGATTCAGCGGTGATAAATTAACCTTGT TTCAACCCAGGGGATTCGCGTCCGACGAGAAGCAGAGCTCCTGTCATACA TACCAACTTCCTTCTATACATTATTACTCTATAGAGCTATTGTTCCGCGA CGTAACCCCCAAAAAATTACACTTTGTATCGGGTAATTAAAGGAGTAGTG CAACGCCCCCTTAACATCCTTTCCCGTCGCCACTCGCTCTGCGCGGGTGG GGTGGGCGGGGCGGGCGCGCAGTTTATCCTCCCGCGGCTGCTCGAGACCG AGCGAGCGGGATCGGGCAAATGCACGATGCGGCTGTACTTCGTCCTCTAC CACGAGGCCACGCTGTCGAATTTTCTAGAAATCGTGATGTTCCACGGCCA CGTCTGCGAGCAAGCGGGGGGCGACCTGCTGGTAGAGCTGACTGACTACT GTGCTCGCAAGATGACGATGCTCATATCCGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig107279:11..1095-

>mRNA_H-elongata_contig107279.599.1 ID=mRNA_H-elongata_contig107279.599.1|Name=mRNA_H-elongata_contig107279.599.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig107279:11..1095- (Himanthalia elongata Himel1 dioecious)
GTACGGCAAACGGGCCTTCGTAGCTGGTTCGAGCAGTATCGGCGGTTGGC
CAAGCTCAACCTGCAGGCACACCAGAGCGCAATGGCTCGCTCGGACGAGT
ACGTGCTGGAGGCTCTCTTGATGTTCGACAAGCTGGGGGTCGTCGTGCAC
GAGCTGCTCGCCATCGAGGCGTGGAAGGAGGTACGGCAAACGGGCCTTCG
TAGCTGGTTCGAGCAGTATCGGCGGTTGGCCAAGCTCAACCTGCAGGCAC
ACCAGAGCGCAATGGCTCGCTCGGACGAGTACGTGCTGGAGGCTCTCTTG
ATGTTCGACAAGCTGGGGGTCGTCGTGCACGAGCTGCTCGCCATCGAGGC
GTGGAAGGAGTTTATCCTCCCGCGGCTGCTCGAGACCGAGCGAGCGGGAT
CGGGCAAATGCACGATGCGGCTGTACTTCGTCCTCTACCACGAGGCCACG
CTGTCGAATTTTCTAGAAATCGTGATGTTCCACGGCCACGTCTGCGAGCA
AGCGGGGGGCGACCTGCTGGTAGAGCTGACTGACTACTGTGCTCGCAAGA
TGACGATGCTCATATCCGGGTAATTTATCCTCCCGCGGCTGCTCGAGACC
GAGCGAGCGGGATCGGGCAAATGCACGATGCGGCTGTACTTCGTCCTCTA
CCACGAGGCCACGCTGTCGAATTTTCTAGAAATCGTGATGTTCCACGGCC
ACGTCTGCGAGCAAGCGGGGGGCGACCTGCTGGTAGAGCTGACTGACTAC
TGTGCTCGCAAGATGACGATGCTCATATCCGGGTAA
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