mRNA_H-elongata_contig20456.5821.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20456.5821.1
Unique NamemRNA_H-elongata_contig20456.5821.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: D7G810_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G810_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.450e-27
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAK-FVNVDIDDLPEAFDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKH 243
            LL+VDFTA WCKPC+ MAP+F+ LA E+KGAA  F  VDID+LPE FDG SIPAF V + G K+D ++G+ E +LR+++  H
Sbjct:   66 LLVVDFTASWCKPCRAMAPIFEGLAKENKGAAAVFAKVDIDNLPETFDGTSIPAFYVFKNGVKVDSVTGSGESKLRKLVADH 147          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A7J6R6D8_PEROL (Thioredoxin domain-containing protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R6D8_PEROL)

HSP 1 Score: 87.4 bits (215), Expect = 7.350e-20
Identity = 41/86 (47.67%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDDLPE-AFDG--LSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKHCK 249
            + IVD++A WC PC+ +APVF +LAG++KG AKFV VD+D L + A D    S+PAF + +G  K++ + GA  ERLR ++ K C+
Sbjct:   83 MFIVDYSAEWCHPCQLIAPVFAELAGQYKGKAKFVRVDVDVLDDLALDNGVTSLPAFHIYKGNEKLETVVGANPERLRAVVAKRCE 168          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A0M0JU45_9EUKA (Thioredoxin h-type-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JU45_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 1.410e-19
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDID---DLPEAFDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKH 243
            +++VDFTA WC PC+R+AP+F +LA +H G A FV VD+D   DL  + + L++P FQ+ +GG K+D L+GA E++L  M+ KH
Sbjct:   97 VMVVDFTAVWCGPCQRIAPLFAELAKQH-GNALFVKVDVDELEDLMHSCEVLAMPTFQIYKGGEKVDTLTGANEKKLVDMVAKH 179          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A7J6L7E3_PERCH (Thioredoxin domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6L7E3_PERCH)

HSP 1 Score: 86.7 bits (213), Expect = 1.470e-19
Identity = 39/86 (45.35%), Postives = 58/86 (67.44%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDID---DLPEAFDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKHCK 249
            LL+VD++A WCKPC++MAP+F  LA E+K  A FV+VD+D   DL       S+PAF++ QG   ++ + GA E++LR  + K C+
Sbjct:   81 LLVVDYSAEWCKPCQKMAPIFADLALEYKDKAAFVHVDVDECDDLAMDHGVASLPAFRIYQGSETLESIVGADEKKLRAAVSKRCR 166          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A7S3XI80_OXYMA (Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3XI80_OXYMA)

HSP 1 Score: 85.9 bits (211), Expect = 5.070e-19
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDID---DLPEAFDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKHC 246
            LL+VD++A WCKPC++MAP+F  LA E+K  A FV+VD+D   DL       S+PAF++ QG   ++ + GA E++LR  + K C
Sbjct:  105 LLVVDYSAEWCKPCQKMAPIFADLALEYKDKAAFVHVDVDECDDLAMDHGVASLPAFRIYQGSETLESIVGADEKKLRAAVSKRC 189          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A2R5GP11_9STRA (Thioredoxin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GP11_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-19
Identity = 39/87 (44.83%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    7 IVDFTAGWCKPCKRMAPVFKKLAGE---HKGAAKFVNVDIDDLPEAFDGLSI---PAFQVLQGGTKIDGLSGAQEERLRQMIDKHCK 249
            +  FTA WC PCK++APVFK+L  E    K +AKFV +D+D+L E    + +   P F V + G+++D L GA E++LR ++ KHCK
Sbjct:  109 VAKFTADWCGPCKKIAPVFKELCAEVNAAKNSAKFVEIDVDELDEVSADVKVSAMPTFVVFKNGSEVDRLMGAHEDKLRALVAKHCK 195          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A7J6U5X6_PEROL (Thioredoxin domain-containing protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6U5X6_PEROL)

HSP 1 Score: 86.3 bits (212), Expect = 9.990e-19
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDDLPE-AFDG--LSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKHCK 249
            + IVD++A WC PC+ +APVF +LAG++KG AKFV VD+D L + A D    S+PAF + +G  K++ + GA  E+LR ++ K C+
Sbjct:  159 MFIVDYSAEWCHPCQLIAPVFAELAGQYKGKAKFVRVDVDVLDDLALDNGVTSLPAFHIYKGNEKLETVVGANPEKLRAVVAKRCE 244          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: A0A8C6U661_9GOBI (Thioredoxin n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6U661_9GOBI)

HSP 1 Score: 81.3 bits (199), Expect = 3.870e-18
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDDLPE--AFDGL-SIPAFQVLQGGTKIDGLSGAQEERLRQMIDKH 243
            L+++DFTA WC PCK +AP F+KLAG+HK    F+ VDIDD  E  A  G+ S+P F   +GG K+D +SGA    L+  I KH
Sbjct:   22 LVVIDFTAKWCPPCKAIAPEFEKLAGQHKDVV-FLKVDIDDAKELSAKHGIRSVPTFLFFKGGAKVDTMSGADLNGLKARILKH 104          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: UPI00038A5F66 (LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID=32630 RepID=UPI00038A5F66)

HSP 1 Score: 81.3 bits (199), Expect = 3.980e-18
Identity = 36/85 (42.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDDLPEA---FDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKHC 246
            L++VDF A WC PCK +AP F++L+ E+     F+ VD+D++P+    +   S+P F+  + G K+D L GA +E+L+QMI KH 
Sbjct:   21 LVVVDFFATWCGPCKMIAPFFEELSEEYPDKVVFIKVDVDEVPDVAAKYGITSMPTFKFFKNGKKVDELVGANQEKLKQMILKHA 105          
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Match: Q685V4_MESGB (Thioredoxin-1 (Fragment) n=8 Tax=Mesobuthus TaxID=34646 RepID=Q685V4_MESGB)

HSP 1 Score: 81.6 bits (200), Expect = 4.740e-18
Identity = 36/84 (42.86%), Postives = 56/84 (66.67%), Query Frame = 1
Query:    1 LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDD---LPEAFDGLSIPAFQVLQGGTKIDGLSGAQEERLRQMIDKH 243
            L+++DF A WC PCK++AP  +KL  E+ G   F+ VD+D+   L + F+   +P F +L+   K+D  SGA +E+LR+M+DKH
Sbjct:   39 LVVIDFFATWCGPCKQIAPFIEKLEQENSGNVVFLKVDVDENEELAQTFNVSCMPTFILLKNRNKVDEFSGANQEKLREMVDKH 122          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20456.5821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G810_ECTSI1.450e-2758.54Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A7J6R6D8_PEROL7.350e-2047.67Thioredoxin domain-containing protein n=1 Tax=Perk... [more]
A0A0M0JU45_9EUKA1.410e-1948.81Thioredoxin h-type-like protein n=1 Tax=Chrysochro... [more]
A0A7J6L7E3_PERCH1.470e-1945.35Thioredoxin domain-containing protein n=1 Tax=Perk... [more]
A0A7S3XI80_OXYMA5.070e-1945.88Hypothetical protein n=1 Tax=Oxyrrhis marina TaxID... [more]
A0A2R5GP11_9STRA5.400e-1944.83Thioredoxin n=1 Tax=Hondaea fermentalgiana TaxID=2... [more]
A0A7J6U5X6_PEROL9.990e-1946.51Thioredoxin domain-containing protein n=5 Tax=Perk... [more]
A0A8C6U661_9GOBI3.870e-1850.00Thioredoxin n=1 Tax=Neogobius melanostomus TaxID=4... [more]
UPI00038A5F663.980e-1842.35LECA THIOREDOXIN n=1 Tax=synthetic construct TaxID... [more]
Q685V4_MESGB4.740e-1842.86Thioredoxin-1 (Fragment) n=8 Tax=Mesobuthus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20456contigH-elongata_contig20456:2023..2972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D7G810
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0001932,GO:0001934,GO:0003674,GO:0003756,GO:0003824,GO:0004791,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007267,GO:0008150,GO:0008152,GO:0008283,GO:0009314,GO:0009628,GO:0009636,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0016853,GO:0016860,GO:0016864,GO:0019220,GO:0019222,GO:0019725,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032147,GO:0032148,GO:0032268,GO:0032270,GO:0032386,GO:0032879,GO:0032880,GO:0033135,GO:0033138,GO:0033157,GO:0033158,GO:0033554,GO:0033674,GO:0034599,GO:0042221,GO:0042306,GO:0042325,GO:0042327,GO:0042592,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043388,GO:0043549,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0045859,GO:0045860,GO:0045937,GO:0046822,GO:0047134,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051173,GO:0051174,GO:0051223,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051716,GO:0051896,GO:0051897,GO:0055114,GO:0060255,GO:0060341,GO:0060548,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070887,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0097237,GO:0098754,GO:0098869,GO:0140096,GO:1900180,GO:1900407,GO:1900408,GO:1901031,GO:1901032,GO:1902531,GO:1902533,GO:1902882,GO:1902883,GO:1903201,GO:1903202,GO:1903205,GO:1903206,GO:1903827,GO:1904589,GO:1990748,GO:2001023,GO:2001024,GO:2001038,GO:2001039
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-06_009740.1
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.4868045-CDS-H-elongata_contig20456:2022..21181622930147.4868045-CDS-H-elongata_contig20456:2022..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20456 2023..2118 -
1691679299.1693008-CDS-H-elongata_contig20456:2022..21181691679299.1693008-CDS-H-elongata_contig20456:2022..2118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20456 2023..2118 -
1622930147.5044165-CDS-H-elongata_contig20456:2807..29721622930147.5044165-CDS-H-elongata_contig20456:2807..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20456 2808..2972 -
1691679299.1786902-CDS-H-elongata_contig20456:2807..29721691679299.1786902-CDS-H-elongata_contig20456:2807..2972Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20456 2808..2972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20456.5821.1prot_H-elongata_contig20456.5821.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20456 2023..2972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20456.5821.1

>prot_H-elongata_contig20456.5821.1 ID=prot_H-elongata_contig20456.5821.1|Name=mRNA_H-elongata_contig20456.5821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
LLIVDFTAGWCKPCKRMAPVFKKLAGEHKGAAKFVNVDIDDLPEAFDGLS
IPAFQVLQGGTKIDGLSGAQEERLRQMIDKHCKKAN*
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mRNA from alignment at H-elongata_contig20456:2023..2972-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20456.5821.1 ID=mRNA_H-elongata_contig20456.5821.1|Name=mRNA_H-elongata_contig20456.5821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=950bp|location=Sequence derived from alignment at H-elongata_contig20456:2023..2972- (Himanthalia elongata Himel1 dioecious)
CTCTTGATCGTCGACTTCACGGCGGGGTGGTGTAAGCCTTGCAAGCGAAT GGCGCCTGTCTTCAAGAAGCTGGCTGGGGAGCACAAGGGTGCCGCGAAAT TCGTGAATGTGGACATCGACGACCTGCCCGAGGCGTTCGATGGTTTGTCT ATTCCTGCGTTTCAAGTGAGCCGCTCCCCAGTACACAGTGCGGTCAAAGT TTGAACCCAGCCGACCCCATGGATGACCTACTGTATAGTACACGCTTGCT AACGATACACGATTATACTTCGTATAATATTAAGGATTTAGATAGATATA TATAGATATAGATATATGTACCGAGTAAGTTTATATAGTTAGTTACTCAT TATTTATCGGTTTGTAGTTGAAATGGAAAAACGTTTTTTTCATGAAGCTA CCAATGTAGGTTCAAGTCCTGCCGGGCTGATATTATATATATATATATAT ATATACACATATATCGTTAGCAAGGGATATGACCACACATACATGTTATA TTTATCTGCCGATGGAGCCATTTCACGCGCTAGATAACCAATCCCACCTA TTATACTGCAACGTTGCCCATCCCACCTGTGGTTCTGAGAGAGCATCCCA TCTATCCCCGATTCATGCCTATGAATTTAGTTCACCGCATTCTCCTGATG GTTTGCTCGAGACGAAAGTCTCCCAGTTCATGTCTTGTGCGGTTCATTCC AATACAACTGAAGTAATATATCGCATAGTGTACGTGTTTCTTTTGCCACC TAATGCTCAAAACGTTTTTTTAACGCTTTTTTCCCATCGAGGCTGAATCA GCCGCCGGGCCGTTGCTTGTCTCCCGCGTGTGACACAACTATATATGTCA TCAGGTGTTGCAAGGTGGCACCAAGATAGACGGCTTGAGTGGCGCACAGG AAGAGCGACTACGGCAGATGATCGACAAGCACTGCAAAAAAGCAAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig20456:2023..2972-

>mRNA_H-elongata_contig20456.5821.1 ID=mRNA_H-elongata_contig20456.5821.1|Name=mRNA_H-elongata_contig20456.5821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig20456:2023..2972- (Himanthalia elongata Himel1 dioecious)
CTCTTGATCGTCGACTTCACGGCGGGGTGGTGTAAGCCTTGCAAGCGAAT
GGCGCCTGTCTTCAAGAAGCTGGCTGGGGAGCACAAGGGTGCCGCGAAAT
TCGTGAATGTGGACATCGACGACCTGCCCGAGGCGTTCGATGGTTTGTCT
ATTCCTGCGTTTCAACTCTTGATCGTCGACTTCACGGCGGGGTGGTGTAA
GCCTTGCAAGCGAATGGCGCCTGTCTTCAAGAAGCTGGCTGGGGAGCACA
AGGGTGCCGCGAAATTCGTGAATGTGGACATCGACGACCTGCCCGAGGCG
TTCGATGGTTTGTCTATTCCTGCGTTTCAAGTGTTGCAAGGTGGCACCAA
GATAGACGGCTTGAGTGGCGCACAGGAAGAGCGACTACGGCAGATGATCG
ACAAGCACTGCAAAAAAGCAAACTAAGTGTTGCAAGGTGGCACCAAGATA
GACGGCTTGAGTGGCGCACAGGAAGAGCGACTACGGCAGATGATCGACAA
GCACTGCAAAAAAGCAAACTAA
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