mRNA_H-elongata_contig20428.5812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20428.5812.1
Unique NamemRNA_H-elongata_contig20428.5812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 1.650e-108
Identity = 178/297 (59.93%), Postives = 206/297 (69.36%), Query Frame = 1
Query:    1 TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLK--------------------------------LTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMFEKQAGR 795
            T +GV+IL+CSVVHSA H A  A +   +    N +NRSGV A++LLLP +LPM +   K K                                LTFE+RK LH  F+PF+IAVCFHG +L+  GAILL WYL DR YFTT MTF +  P +K VGRGTLVRF LP GY +KPGAYVQVNCPAIS  EWHPFSLFP+ G +P   AGFHVEAVGDWT E+FR  LE P MPLWITAAQPSV+E+TVY++NV+LVCTG GITPAV V ERF KKKN+HLLW  R+AGMVAMFEKQ  R
Sbjct:  311 TYFGVLILLCSVVHSACHIAVGALQRRADYAFENEINRSGVVAMLLLLPIALPMTMRLAKAKVPEEVYRSLAPTGFSLPRVVARCFARDNETPQLTFEVRKYLHLLFMPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGPRPR--AGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVMEKTVYFENVLLVCTGAGITPAVSVAERFQKKKNIHLLWCCRDAGMVAMFEKQLRR 605          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 322 bits (826), Expect = 1.480e-100
Identity = 164/265 (61.89%), Postives = 194/265 (73.21%), Query Frame = 1
Query:    1 TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMFEKQAGR 795
            T +GV+IL+CSVVHS  H A  A +   +    + +NRSG+ A++LLLP +LPM +   K KLTFE RK LH  FIPF+IAVCFHG +L+  GAILL WYL DR YFTT MTF +  P +K VGRGTLVRF LP GY +KPGAYVQVNCPAIS  EWHPFSLFP+ GS+P   AGFHVEAVGDWT E+FR  LE P MPLWITAAQPSV+E+T+Y+DN         I+ A+ +   F KKKN+HLLW  R+AGMVAMFEKQ  R
Sbjct:  331 TYFGVLILLCSVVHSVCHIAVGALQRRADHAFKDEINRSGLVAVLLLLPIALPMTMRLAKTKLTFEARKYLHLLFIPFMIAVCFHGRALQILGAILLAWYLLDRLYFTTKMTFLLSSPVYKPVGRGTLVRFELPPGYQYKPGAYVQVNCPAISVSEWHPFSLFPVPGSRPR--AGFHVEAVGDWTNEMFRFCLENPQMPLWITAAQPSVVEKTMYFDN------EPSISEAIELEPVFQKKKNIHLLWCCRDAGMVAMFEKQLRR 587          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 6.780e-90
Identity = 137/262 (52.29%), Postives = 181/262 (69.08%), Query Frame = 1
Query:    1 TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMFEKQ 786
            T +G + L+    H  +H AR++Y     ++      RSG+ AI+LLLP  LPM   F + K+TF+ RK +H  F+  ++A+CFH    R   +ILLLWYL D FYF T  TF +  P ++ +GRGT+V   LPEGY FK G+Y+ VNCPAI   EWHPFSL P+ G   T  A F+ EAVGDWT++LFRL L  P  PLWITAAQPS++E T++YDNV+L+CTG GITPAV V +RFA KKN+HL+W++R+ GM+A+FEKQ
Sbjct:  214 TYFGFLTLVAGWAHGVLHLARVSYADEKFLMYETHAFRSGIFAILLLLPIVLPMRFSFFRNKMTFQFRKRMHMLFLVMLVALCFHSVVFRYVASILLLWYLIDNFYFITKQTFLVSHPTYEAIGRGTMVGIDLPEGYTFKAGSYIYVNCPAIDRAEWHPFSLIPVPGV--TSRAAFYAEAVGDWTKDLFRLGLANPSQPLWITAAQPSLIETTLFYDNVLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQ 473          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 4.320e-88
Identity = 144/265 (54.34%), Postives = 181/265 (68.30%), Query Frame = 1
Query:    1 TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMFEKQAGR 795
            T +G + L+  V+H   H AR   EG+    + + M RSG  A++LL P ++PM++G  K  +TFE RK LH  FIPF++A+CFHG  L     IL+ WYL DR YFTT +                        GY FK G+Y+QVNCPAISA EWHPFS+FP+ G +P    GF+VEAVGDWTQELFRLSL+ P MPLWITAAQPSVLE++VY++NVI+VCTG GITPA+C+ +  +KKKN+HL+WLSREAGMVA FEKQ  R
Sbjct:  111 TYFGSLTLLFGVLHGLAHLAREVNEGHWNCFASS-MGRSGFIALVLLFPIAVPMLLGRPKKLMTFEFRKALHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRI------------------------GYQFKVGSYIQVNCPAISAKEWHPFSMFPVPGPRPR--GGFYVEAVGDWTQELFRLSLDDPCMPLWITAAQPSVLEKSVYFENVIMVCTGAGITPAICLADMLSKKKNVHLMWLSREAGMVATFEKQLRR 348          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: A0A6H5JEC1_9PHAE (FAD_binding_8 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 1.430e-75
Identity = 126/218 (57.80%), Postives = 155/218 (71.10%), Query Frame = 1
Query:    1 TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDN 654
            T +G + L+  V+H   H AR   EGN    + + M RSG  A++LL P ++PM++G  K  +TFE RK LH  FIPF++A+CFHG  L     IL+ WYL DR YFTT M F I +  F+ VGR TLVRF LP GY F  G+Y+QVNCPAISA EWHPFS+FP+ G +P    GF+VEAVGDWTQELFRLSLE P MPLWITAAQPSVLE++VY++N
Sbjct:  320 TFFGSLTLLFGVLHGLAHLAREVNEGNWNFFA-SPMGRSGFVALVLLFPIAVPMLLGRPKKLMTFEFRKALHMLFIPFMVAMCFHGKVLAVLAGILVAWYLVDRTYFTTRMHFCIERAVFRPVGRATLVRFDLPPGYQFNVGSYIQVNCPAISAKEWHPFSMFPVPGPRPR--GGFYVEAVGDWTQELFRLSLEDPCMPLWITAAQPSVLEKSVYFEN 534          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: D7G8D0_ECTSI (Putative respiratory burst oxidase homolog protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D0_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 3.070e-38
Identity = 64/84 (76.19%), Postives = 68/84 (80.95%), Query Frame = 1
Query:  403 EGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDN 654
             GY ++PGAYVQVNCPAIS  EWHPFSLFP+ G  P   AG HVEAVGDWT ELFRLSLE P MPLWITAAQPSV EQ VY+DN
Sbjct:    4 SGYKYQPGAYVQVNCPAISVSEWHPFSLFPVPGPNPR--AGLHVEAVGDWTNELFRLSLEHPRMPLWITAAQPSVAEQAVYFDN 85          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: A0A7S4FLU6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FLU6_9EUGL)

HSP 1 Score: 136 bits (342), Expect = 1.210e-32
Identity = 95/268 (35.45%), Postives = 137/268 (51.12%), Query Frame = 1
Query:    1 TDYGVVILICSVV-HSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAI--LLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLT--AGFHVEAVGDWTQELFRLSLEKPYM-PLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMFEKQ 786
            T  G  IL  SV  HS  H  R   +GNL  L   V   +G+ A++      LPM+V  LK +L++E+RK LH     F IA+ FH  ++  F  +  +LL Y  D  Y   +  + I    F  +  G  +RF+ PEG  F+ G YV +  P ++  +WH FSLF    S PT    +  H+  VGDWT  L     E+P   P W+     S     + +DN+ILV +G GITPA+ VI   AK + ++L+W  R+ G+V  + +Q
Sbjct:  149 TTLGHFILWSSVFFHSLPHIIRWGLQGNLSFLVTRVTGATGLLAMVAAPCIVLPMLVPALKRRLSWEVRKGLHHLHWVFGIALAFHAPAVNIFWIMFAVLLVYGLDALYGLLLKAYIIETAEFTCLKNGVQLRFVNPEG--FRGGGYVLLCVPWLNRHQWHAFSLF----SHPTEPNQSCVHISNVGDWTDLLHGSLTERPTCRPCWVQGPFASPYHTALEFDNIILVASGIGITPAIEVINHHAKTRKVNLVWSCRDPGLVQFYLEQ 410          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: R1FV62_EMIHU (FAD-binding FR-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FV62_EMIHU)

HSP 1 Score: 132 bits (331), Expect = 2.910e-31
Identity = 83/258 (32.17%), Postives = 134/258 (51.94%), Query Frame = 1
Query:   10 GVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGS--SLRSFGAILLLWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMF 777
            G ++ +   +HS  H  R A +GN ++L  +    SG+   +L+   ++P+ V ++K ++ +E RK LH+  I + I +CFH     +     + +  YLAD    +   T+ +    F  +  G  + F  P G++F+   YV V  P IS  +WH FSLF  S +KP   A   + AVGDWT+ L     E    P WI+    S       YDN+ILV +G GITPA+ +I  + +K+ ++L+W  R+A +V  +
Sbjct:  129 GHIVALDYSLHSVCHIVRWALQGNAKLLLTHQTGVSGLLCFVLIPVITVPLSVAYIKKRMAWEWRKGLHYLSIVWGITICFHAPLMDIAWLMGVPVGMYLADMLIGSVWRTYRVDTSIFYRLENGVELTFEHPPGFHFQGAGYVLVCLPWISQYQWHAFSLFAHS-TKPN-HACVCMSAVGDWTKSLHAHVQEPTRRPAWISGPFASPYSTAGEYDNLILVASGIGITPALSLITTYKEKRRVNLIWSCRDASLVEFY 384          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: A0A7S2V2F3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2F3_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.770e-29
Identity = 83/264 (31.44%), Postives = 129/264 (48.86%), Query Frame = 1
Query:   22 LIC--SVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLW----YLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKP----GAYVQVNCPAISAVEWHPFSLF--PLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMF 777
            LIC  ++VH+  HF R   +G L  +       +G+ A ++LL  S+PM +  L+ K+ +E+RK LH+ FIPF I + +H  S  S+ A +L +    Y  D FY  T  T F+   +F ++  G  V   +      +     G +  +  P IS  EWHPFS++  P   +K  +     +   G+W++ L          P+W+     S     V YDN ILV TG GITPA+C I      K + L+W++ E  +V  +
Sbjct:  122 LICFEALVHTIFHFIRWGLQGKLMFIFSTRTGSTGLLAFIILLLISVPMTL--LRAKICYEVRKALHWMFIPFAICLAWHAPSDVSWIAHVLSFCIVIYCLDSFYVWTFRTEFVKTTHFTVLDCGVQVSMPVSSAMVDRTVLGGGGFAYLCIPWISKYEWHPFSIYDDPEDPNKRNI----FIYKAGNWSKALHNSLRVNTTCPVWLQGPFHSPFGSAVEYDNQILVATGIGITPAICTINALKADKKISLIWMTHEPELVEFY 379          
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Match: B8CG47_THAPS (FAD-binding FR-type domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CG47_THAPS)

HSP 1 Score: 120 bits (302), Expect = 2.230e-27
Identity = 74/258 (28.68%), Postives = 123/258 (47.67%), Query Frame = 1
Query:   37 VHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPTSLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLR----SFGAILL----LWYLADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYY--FKPGAYVQVNCPAISAVEWHPFSLFPLSGSKPTLTAGFHVEAVG-DWTQELFRLSLEKPYMPLWITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLSREAGMVAMF 777
            VH+  H  R   +GN+++L  N+   SG+  ++     + PM +  L+L +++E+RK LH+ F  F I +CFH  +       F  ++L    ++Y  D  Y    MT  I    F ++  G  +   + + +   +  G Y  V  P +S  +WH FSLF    + P L   F ++  G DWT  +          P+WI+    S     + +DN I V +G GITPA+ VI    + + ++L+W  R+  M+  F
Sbjct:  164 VHTLFHCLRWGIQGNIDLLWTNITGLSGLIVVLATPLITFPMFINPLRLAMSYEVRKGLHYLFYLFAIGMCFHNKTSAFPNGGFNQVVLGFCIVYYTLDSLYVMIFMTEMIETTVFNVLPSGVQMTMAVSDHFQKTYAQGGYGYVCLPWVSKYQWHAFSLFE-HPTDPNLRQVFMMKVQGGDWTNSVHEQLQRNTVRPVWISGPFVSPYNNALDFDNTICVASGIGITPALSVIRAHRESRRINLIWTCRDVAMLEFF 420          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20428.5812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHI2_9PHAE1.650e-10859.93FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI1.480e-10061.89Putative respiratory burst oxidase protein n=1 Tax... [more]
D8LF83_ECTSI6.780e-9052.29Putative respiratory burst oxidase homolog protein... [more]
D7G8C4_ECTSI4.320e-8854.34Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JEC1_9PHAE1.430e-7557.80FAD_binding_8 domain-containing protein n=1 Tax=Ec... [more]
D7G8D0_ECTSI3.070e-3876.19Putative respiratory burst oxidase homolog protein... [more]
A0A7S4FLU6_9EUGL1.210e-3235.45Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
R1FV62_EMIHU2.910e-3132.17FAD-binding FR-type domain-containing protein n=1 ... [more]
A0A7S2V2F3_9STRA1.770e-2931.44Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B8CG47_THAPS2.230e-2728.68FAD-binding FR-type domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20428contigH-elongata_contig20428:177..4543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score324.7
Seed ortholog evalue4e-86
Seed eggNOG ortholog2880.D7G8C8
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons7
Model size798
Cds size798
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.567058-CDS-H-elongata_contig20428:176..3621622930146.567058-CDS-H-elongata_contig20428:176..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 177..362 +
1691679298.8888283-CDS-H-elongata_contig20428:176..3621691679298.8888283-CDS-H-elongata_contig20428:176..362Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 177..362 +
1622930146.584023-CDS-H-elongata_contig20428:857..10031622930146.584023-CDS-H-elongata_contig20428:857..1003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 858..1003 +
1691679298.899393-CDS-H-elongata_contig20428:857..10031691679298.899393-CDS-H-elongata_contig20428:857..1003Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 858..1003 +
1622930146.5969021-CDS-H-elongata_contig20428:1751..18231622930146.5969021-CDS-H-elongata_contig20428:1751..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 1752..1823 +
1691679298.9075675-CDS-H-elongata_contig20428:1751..18231691679298.9075675-CDS-H-elongata_contig20428:1751..1823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 1752..1823 +
1622930146.613232-CDS-H-elongata_contig20428:2205..23411622930146.613232-CDS-H-elongata_contig20428:2205..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 2206..2341 +
1691679298.9185128-CDS-H-elongata_contig20428:2205..23411691679298.9185128-CDS-H-elongata_contig20428:2205..2341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 2206..2341 +
1622930146.6262076-CDS-H-elongata_contig20428:2654..27691622930146.6262076-CDS-H-elongata_contig20428:2654..2769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 2655..2769 +
1691679298.932738-CDS-H-elongata_contig20428:2654..27691691679298.932738-CDS-H-elongata_contig20428:2654..2769Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 2655..2769 +
1622930146.637189-CDS-H-elongata_contig20428:3829..38841622930146.637189-CDS-H-elongata_contig20428:3829..3884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 3830..3884 +
1691679298.941606-CDS-H-elongata_contig20428:3829..38841691679298.941606-CDS-H-elongata_contig20428:3829..3884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 3830..3884 +
1622930146.6493423-CDS-H-elongata_contig20428:4455..45431622930146.6493423-CDS-H-elongata_contig20428:4455..4543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 4456..4543 +
1691679298.9504433-CDS-H-elongata_contig20428:4455..45431691679298.9504433-CDS-H-elongata_contig20428:4455..4543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20428 4456..4543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20428.5812.1prot_H-elongata_contig20428.5812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20428 177..4543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20428.5812.1

>prot_H-elongata_contig20428.5812.1 ID=prot_H-elongata_contig20428.5812.1|Name=mRNA_H-elongata_contig20428.5812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
TDYGVVILICSVVHSAVHFARLAYEGNLEVLSGNVMNRSGVAAIMLLLPT
SLPMIVGFLKLKLTFELRKILHFAFIPFIIAVCFHGSSLRSFGAILLLWY
LADRFYFTTIMTFFIGKPNFKIVGRGTLVRFILPEGYYFKPGAYVQVNCP
AISAVEWHPFSLFPLSGSKPTLTAGFHVEAVGDWTQELFRLSLEKPYMPL
WITAAQPSVLEQTVYYDNVILVCTGTGITPAVCVIERFAKKKNLHLLWLS
REAGMVAMFEKQAGR*
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mRNA from alignment at H-elongata_contig20428:177..4543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20428.5812.1 ID=mRNA_H-elongata_contig20428.5812.1|Name=mRNA_H-elongata_contig20428.5812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4367bp|location=Sequence derived from alignment at H-elongata_contig20428:177..4543+ (Himanthalia elongata Himel1 dioecious)
ACAGACTACGGGGTGGTCATCTTGATCTGCTCCGTTGTCCACAGTGCGGT GCATTTTGCGCGCCTGGCGTATGAGGGCAACCTCGAGGTCCTGAGCGGCA ATGTAATGAACCGCTCGGGCGTCGCGGCGATCATGCTGCTCCTGCCAACT TCTTTACCCATGATCGTAGGATTCCTCAAGTTGAAGGTGACACTTACAGT TCGCGGAGGTCGTGTTGTGGTGTCTGTCCGTGAGCTTGGCTCAAACGTTT CATCAGCGGCGCTAGGTGACGCGATGTGCGTGACCCCTTGAGTCAGTCGC GCTTTTCTGTGGAGCCTTCTCTGCGGGGCTAGTCTAGCGACCGGTTTTGC GTCAATCTTCATGCTTCCTTCCCTGTCATTTTGCTGTTCGCTTTCGTGTG TGATGTTAGAAATATACCTGAACATCTCAGCGTGATATGGAGTAAAATAG TTTGAGGAGACATTGCCAGAGCTTTGTCTTTTCTCTTTATTTCCCTCTGC AGTTCTGTGAGCCAAAAAAGCCTCAACATCTGGCGGAACGGTTAGCCAGT CCAAACGCATATATATACTAAATAATACAACAATGTGCGAGTGAGAGCCT GATTTAATGTACCAATTATGTCCCGATTGCTCTTTCCGTTGCCATTTTCC TAACCCTTCTCACCCTTTTACCCCCAAACAGCTGACGTTTGAGCTTAGGA AGATACTCCACTTCGCGTTTATCCCTTTCATCATAGCCGTTTGCTTCCAC GGAAGCTCTCTGCGAAGTTTCGGTGCCATTCTTCTTTTATGGTACCTCGC GGACCGCTTTTACTTCACCACCATAATGTGAGTTATAGAAGGGAGGGGGG CGCTTCCGGAGGGAAAGGGAGAAATTGCTGTCGCTCTAAGGAAAGCATCC TTGCTTTCAAGATGCGATCATGTCTCGCACGGTCATGCACCTCCCGAGAC AGGGGGTACTATATAGTAATAGTTGTTGTTTTGTGGTTGTTGCTTTTATG AAAAGCGGATAAGTAGATCATACAACCGGGCGCGCGATGATCGACGACGA CTCGAGAAGATGACTTGAGAAGATGGCTCGTGTAGATGGCTCGTGTGTTT CCTTTCATTTTACGCCGATGCTGAAAAGTGTCTCTCAAGTCAATTCTTGC AACAGGATCGGTGATCTAGTCTCGTGCGTTCACCGTTGACGTGCCTTCCA TGCAATAATGCATCGACTCCCCAGCGTCAGCCATGGGACTCACCGTTGGT CGGGGTTGTTTTTTTTCGTGCGTCGAGGAGGGCTAGTATAAATATATCCA TATATATCCTATACAGGGTACATACCTATAACACCAGTAAATTTTACAAC GTTTTGTGTTGTTGCAACATTTATCCCGTTTTCATGCGGTTCACAATTGC GCGCTGCGGAAGACAAATGTTGCCCTGCTCGGCTGTAAAAAGTGCTACTC AAGATATTGTAGGTATATCTTGCTTTGCTGTGGCTTATCCCTTTACCAAC CCCGTCGCACATCTAACCAAAACGTGGTCCCAATAAATGTTTGGATGCTT CCTTCTTCATCGTCTGGGGGCACAGGACATTCTTTATCGGTAAACCCAAC TTCAAGATTGTGGGGAGGGGCACCCTGGTCCGCTTCATTCTTCCGGAGTG AGAAACGCGGTAGTTTGTATTCGCTAGCTGCTGCCGCTGTTGTGAATATA TGCATTTATCTCTCTTTAAATCTCGCTCTTTTTCCCTCTGTGTGTACTTG TGCTCGTAAGTAGAAGACGTGACCATGAAACGCGACGCGTAGGTTGGCCG ATACAAAATAGGCCGAGCCATTAAGAAAACGACCCCCTGCTACAGATTTA TTTGAATACACGCGTATGCGTGTAACCCATGGCGTCACTTTATGCCGTGC TGTTGCAGTGTATATGTTTAACAAAGCGACACGTGCCTCCGGCCAATGAA TGCTTTCACCATTAACCCAACGCAACCGTCTCCGCCCTACCTCTCCTCCC CTTTTGATGATACTCCCGATCAAATCTAGGGGATACTATTTCAAGCCGGG CGCGTACGTCCAAGTCAATTGCCCCGCGATCAGCGCGGTAGAGTGGCATC CATTCTCCCTTTTCCCCTTGTCCGGTTCGAAACCCACACTCACGGCAGGC TTTCACGTCGAGGCGGTAGGTGAAATGTAGACGAACACACCCCCCCCCCC CCCCCCCCTTCAGTCTCTTCTTACTGAGTGATCAACTCAGACGAGGTTTG GTGGAATGCCGATGCTACGTGGCGATTAAGCTTCGTCCCCTCTCTATATT ATTTCTTCAATCTTGGCCAAGAGGATTGATTGGGGACTATTGACATCAAA CTGTCTTTATCGCTAGTGCCTGCCAAGGTGCCTCGCGCGTTACGTAGCAG CCTCGGCACTCCCCTGTCACCTCCTACGTCCTTCCCATACCACAATGAAA TATTTTATTTCATCTTTACGCGCGCCAGGTTGGCGATTGGACCCAAGAGC TCTTCCGTCTCAGCCTGGAAAAGCCATACATGCCGCTGTGGATAACTGCG GCGCAACCCAGCGTCCTGGAGCAGACGGTCTACTACGATAATGGTGAGTG CGCGGGAAAATATGTGCGTGTGCGTAAGTCACTTCGGAAGGTGAGCCCGC ACAATAATTGTCAAATTTCAACAACCGAAACGACTGAGGTCCCTTCTCGT CGGTTGTTACTTTATTATGGACGTTCTTCGCGATGGATATATTTATTTAG ATTTTCCTGCGTGGTCATCACGTGTATTAGAATAAGGGCCAACCGGGTTT GGATGCCTCTTGCTTGTCGTCAGCTGAACACGGGAAACTTATTTTCCCTG CCCCGTTCGCGCCTGAGAAGTGTTTCTCGCGATACGAGTTAGGCAGTCCC GTCCCGCGTCCCAGACTGAATCTAGTGCGCACTCCAGCGATCATCTCAAT CCTCTCGTTTTCCGTAACGGCGTCCATCTCTAACGTCAATCGCCATCGGG TCAATCACGATTTAATCAGATTATGTAATTGTGTTCCGATGGCATTTATG ACCGAGAGTCCGCCGACACCGAGCCAGCAGTTATCAAGGTAGTTTGAGTA ATGGATACAGTCTATTCGGGTAACACCATGGACCAATTATTGTACGCCTC TCTAATGTATCGGTACAAGGGATGTAATGTTTGAACAGCGAAGCGTGCAG AATTGGCTCGCCCAGCTACTGGCGAGGTGTGTTTTCCCTGCGAGCATGGC TTTTGTTTTACAGAAATGTTCACGCGAAGATTATCTTGAAGACCACCCCC ACTTGCCACGAGCTGTGCATATTCCTCCGCTCTCCCCTTCCCCTCTGAAC ATTGGGCCGACGCTTCAACTTCCCCATCACAGCCAATAGTGGTCGGCGCG CTACAAGGGGTCCCCGAAATGTACCAACCTTGCTTGTAAAAATAAGCTTG TGCAAAACAGCGCACGAACGGCACTGTCGTCCACTCTCCCCATTTTGTCA GTGTACCTATGCTGTGTGTGATACGTTCCCCCCGTCCCCTTTGCCCCCCC TTCCCCCGCCCCCATCTCACCTCTGCTTTAATTGTGTTGTCCGGTGCCAT CCACGTTTTCCTCCTCTCCGGATACCTTTTTCTACCCTCTACGGCACCGA AAGTGATCCTCGTGTGCACGGGCACTGGCATTACCCCCGCAGTCTGCGTT ATCGAAAGGTGAGAGATGCCGACCTCGGGGCTCGACCGGACACTTTTAGG CCACCGCCTGTCGTGTGCTTCTCCTCGGGTGTTTTTTGGAGAGAAACAAG AGACGTAGTGAGCGAGGTTGTCACCGGAAGTGCTTTCCTCCAGAGGTAAG GGGTTCGTAGAGTGACTGCCGGCGGATTTTGTGCTGGGTGTGCCCCATCT TCCCTCGTGAAGGAAAGCGTATAGCATTTAATGATGGACAGCAAAAGGGG TGCTAAATAGTGCACAGCTGTAGCACTGGTGTCTTCACATAATGGGCTCC AACCAGTGCCTCTCGAGGGGATTGGCTCCCGCAAGATCGCGATCGGTACC ATTCCTGCAACTTGTCTGACGCAAAAAAAGGCAGATATACCCGATGATAA TATATCGTCCCGTCTCTCTCTCCCTCTCTCTCTCTGAACTTGATGGCTTT GACAGGTCCTTCTACTGCGGTCGTCCGGTATTCACTACATTTAAACAGGG TTAAATATGATACCGCCAGAATATAACTCCCGCTTCCCCTAAATCGTGTG CTGCGATGACCCTCGGAAACACCCCCCAGGTTCGCAAAAAAGAAGAACCT TCACTTGCTATGGCTGTCTCGGGAGGCGGGCATGGTCGCCATGTTTGAGA AGCAGGCGGGTCGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig20428:177..4543+

>mRNA_H-elongata_contig20428.5812.1 ID=mRNA_H-elongata_contig20428.5812.1|Name=mRNA_H-elongata_contig20428.5812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig20428:177..4543+ (Himanthalia elongata Himel1 dioecious)
ACAGACTACGGGGTGGTCATCTTGATCTGCTCCGTTGTCCACAGTGCGGT
GCATTTTGCGCGCCTGGCGTATGAGGGCAACCTCGAGGTCCTGAGCGGCA
ATGTAATGAACCGCTCGGGCGTCGCGGCGATCATGCTGCTCCTGCCAACT
TCTTTACCCATGATCGTAGGATTCCTCAAGTTGAAGACAGACTACGGGGT
GGTCATCTTGATCTGCTCCGTTGTCCACAGTGCGGTGCATTTTGCGCGCC
TGGCGTATGAGGGCAACCTCGAGGTCCTGAGCGGCAATGTAATGAACCGC
TCGGGCGTCGCGGCGATCATGCTGCTCCTGCCAACTTCTTTACCCATGAT
CGTAGGATTCCTCAAGTTGAAGCTGACGTTTGAGCTTAGGAAGATACTCC
ACTTCGCGTTTATCCCTTTCATCATAGCCGTTTGCTTCCACGGAAGCTCT
CTGCGAAGTTTCGGTGCCATTCTTCTTTTATGGTACCTCGCGGACCGCTT
TTACTTCACCACCATAATCTGACGTTTGAGCTTAGGAAGATACTCCACTT
CGCGTTTATCCCTTTCATCATAGCCGTTTGCTTCCACGGAAGCTCTCTGC
GAAGTTTCGGTGCCATTCTTCTTTTATGGTACCTCGCGGACCGCTTTTAC
TTCACCACCATAATGACATTCTTTATCGGTAAACCCAACTTCAAGATTGT
GGGGAGGGGCACCCTGGTCCGCTTCATTCTTCCGGAGACATTCTTTATCG
GTAAACCCAACTTCAAGATTGTGGGGAGGGGCACCCTGGTCCGCTTCATT
CTTCCGGAGGGATACTATTTCAAGCCGGGCGCGTACGTCCAAGTCAATTG
CCCCGCGATCAGCGCGGTAGAGTGGCATCCATTCTCCCTTTTCCCCTTGT
CCGGTTCGAAACCCACACTCACGGCAGGCTTTCACGTCGAGGCGGGGATA
CTATTTCAAGCCGGGCGCGTACGTCCAAGTCAATTGCCCCGCGATCAGCG
CGGTAGAGTGGCATCCATTCTCCCTTTTCCCCTTGTCCGGTTCGAAACCC
ACACTCACGGCAGGCTTTCACGTCGAGGCGGTTGGCGATTGGACCCAAGA
GCTCTTCCGTCTCAGCCTGGAAAAGCCATACATGCCGCTGTGGATAACTG
CGGCGCAACCCAGCGTCCTGGAGCAGACGGTCTACTACGATAATGGTTGG
CGATTGGACCCAAGAGCTCTTCCGTCTCAGCCTGGAAAAGCCATACATGC
CGCTGTGGATAACTGCGGCGCAACCCAGCGTCCTGGAGCAGACGGTCTAC
TACGATAATGTGATCCTCGTGTGCACGGGCACTGGCATTACCCCCGCAGT
CTGCGTTATCGAAAGTGATCCTCGTGTGCACGGGCACTGGCATTACCCCC
GCAGTCTGCGTTATCGAAAGGTTCGCAAAAAAGAAGAACCTTCACTTGCT
ATGGCTGTCTCGGGAGGCGGGCATGGTCGCCATGTTTGAGAAGCAGGCGG
GTCGATGAGTTCGCAAAAAAGAAGAACCTTCACTTGCTATGGCTGTCTCG
GGAGGCGGGCATGGTCGCCATGTTTGAGAAGCAGGCGGGTCGATGA
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