mRNA_H-elongata_contig20423.5811.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20423.5811.1
Unique NamemRNA_H-elongata_contig20423.5811.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: D7G0W4_ECTSI (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W4_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 5.740e-51
Identity = 101/186 (54.30%), Postives = 122/186 (65.59%), Query Frame = 3 
Query:  282 TVITALLSHCYRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWD----VPPPTLRDE--------------GTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQ 785
            T  +  L H   T+   +Y+LSK+   AY FY+ +  LLPNLVTA+VLFYGG+LV+ G IT GKVVSFMIYL++LSDGFN+MA IF+SMTQAVGAADKVFELIRRKP+       PPP+   +               TA      G  P TC G +E   VDFEYPSRPGR IL+G+SF A+ GQ
Sbjct:  300 TPTSPTLPHTSYTSRLSFYVLSKRGSYAYGFYASSYVLLPNLVTAVVLFYGGQLVMDGQITGGKVVSFMIYLTSLSDGFNDMAAIFSSMTQAVGAADKVFELIRRKPKGPRPSASPPPSSASQHSACETGAARSVRHATAAAFEEGGAAPETCLGAVELKGVDFEYPSRPGRRILDGVSFNAAAGQ 485
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A4D9CQ84_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ84_9STRA)

HSP 1 Score: 144 bits (362), Expect = 3.560e-37
Identity = 83/165 (50.30%), Postives = 107/165 (64.85%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGD-ITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQ-WDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            YR     YY L+K+   AY  Y+    LLPNLVTALVLFYGG+LVL  D +TSG++VSF++ L +LS+GF+ M  IF+S+TQA+GAADKVFELIRR PQ   +P P L               PA C G++E  +V F YP+RP R +LN I+  A PG+V  +V
Sbjct:   17 YRGKLDEYYDLNKQEARAYGAYAVATTLLPNLVTALVLFYGGQLVLNEDGLTSGQLVSFLLLLGSLSEGFSNMGSIFSSITQALGAADKVFELIRRPPQSTPLPIPPL--------------APAFCSGKVELRDVTFRYPARPARPVLNKINMLAEPGKVVALV 167
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A835YSY9_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 3.180e-36
Identity = 82/166 (49.40%), Postives = 102/166 (61.45%), Query Frame = 3 
Query:  303 SHCYRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            S  Y      YY L+ +   AY  Y+ T  LLP LVT LVLFYGG++VL G +  G VV+FM+YLS+LSDGFN M  IF+S+TQAVGAADKVFELIRR+PQ   P       G A +       P  C GE+    V F YP+RP R +L+G++    PGQV  +V
Sbjct:  283 SAAYGARLHDYYALAIREAAAYGAYASTAALLPQLVTVLVLFYGGRMVLAGQLDGGSVVAFMLYLSSLSDGFNNMGAIFSSITQAVGAADKVFELIRREPQVRKP------RGGAALR------PLECAGELTLEEVHFTYPARPTRPVLHGVNLVVRPGQVLALV 436
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: W7TKE5_9STRA (Atp-binding cassette sub-family b member 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKE5_9STRA)

HSP 1 Score: 143 bits (361), Expect = 3.940e-35
Identity = 82/165 (49.70%), Postives = 107/165 (64.85%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGD-ITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQ-WDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            YR     YY L+K+   AY  Y+    LLPNLVTALVLFYGG+LVL  D +TSG++VSF++ L +LS+GF+ M  IF+S+TQA+GAADKVFELIRR PQ   +P P L               PA C G++E  +V F YP+RP R +LN ++  A PG+V  +V
Sbjct:  562 YRGKLDEYYDLNKQEARAYGAYAVATTLLPNLVTALVLFYGGQLVLNQDGLTSGQLVSFLLLLGSLSEGFSNMGSIFSSITQALGAADKVFELIRRPPQSTPLPEPPL--------------APAFCSGKVELRDVTFRYPARPARPVLNKMNMLAEPGKVVALV 712
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A1E7FK35_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK35_9STRA)

HSP 1 Score: 141 bits (355), Expect = 5.710e-35
Identity = 75/159 (47.17%), Postives = 102/159 (64.15%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQV 788
            ++ +   Y  L+ K+ IAY  Y+  +  LP LVTALV+FYGG LV  GDI+SG++VSF++YL +LSDGF+ + YIF+S+TQAVGAADKVFEL+ RK       P +  +         G  P TCRGE+   NV+  YP+RP R +LN +S    PG +
Sbjct:  166 FKGHMDEYLALNTKSAIAYSGYATVSTSLPQLVTALVVFYGGLLVRNGDISSGELVSFLLYLQSLSDGFSSIGYIFSSLTQAVGAADKVFELMYRKR------PGMPQQ-------QHGLEPNTCRGEVTLKNVEMYYPARPNRRVLNDMSLSVPPGSI 311
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A1Z5KDK8_FISSO (ATP-binding cassette, subfamily B (MDR/TAP), member 9 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK8_FISSO)

HSP 1 Score: 140 bits (352), Expect = 6.190e-34
Identity = 77/173 (44.51%), Postives = 105/173 (60.69%), Query Frame = 3 
Query:  330 RYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANC----------------GTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            +Y  L+ ++  AY  ++C    LP LV A+V+FYGG +V   DITSG++VSF++YL +LSD    M ++F S+TQAVGAADKVFEL+ R+P+   PP T R    AE  +                  G VP + RG+IEF +V   YPSRP + +LNGISFK  PG +  +V
Sbjct:  505 KYLTLNMRSSFAYCGFACLTTSLPELVFAVVVFYGGLMVRNEDITSGQLVSFLLYLQSLSDAIASMGWVFGSLTQAVGAADKVFELLNRQPKV-TPPSTTRPIMEAERHSRAHNLQLGTFKTTNQRLQGIVPESARGQIEFKDVTLYYPSRPQKRVLNGISFKVEPGSIVALV 676
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A7S2V4D5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4D5_9STRA)

HSP 1 Score: 129 bits (323), Expect = 8.750e-34
Identity = 65/135 (48.15%), Postives = 91/135 (67.41%), Query Frame = 3 
Query:  396 LPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            LP +V  LVLFYGG+LVL+G ++SGK+VSFM+YL+TLS+ F+ M  +++S+++A GAADKVFEL++RKP+ +V P                 V   C+G +E  +V F YPSRP R ILN +S K +PG V  +V
Sbjct:    6 LPQMVNVLVLFYGGRLVLEGSVSSGKLVSFMLYLTTLSEAFDTMGAMWSSISEAAGAADKVFELVKRKPELEVQP-------------RSPIVSLACQGRLELKDVCFRYPSRPTRQILNHLSLKITPGTVCALV 127
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: B7FY43_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY43_PHATC)

HSP 1 Score: 132 bits (331), Expect = 2.570e-31
Identity = 70/163 (42.94%), Postives = 100/163 (61.35%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            +  +  +Y  L+K++ +AY  Y+     +P LV A+V+FYGG LV   DI+ G +V F++YL  LSD F+ + YIF+S+TQAVGAADKVFEL+ R P++         E +A+  A         RGEI+F NVD  YP+RP R +LN +S K  PG +  +V
Sbjct:  173 FEQHMGKYLALNKRSAVAYCGYAAFTTAVPQLVFAVVVFYGGMLVRNNDISIGDLVKFLLYLQALSDAFSSIGYIFSSLTQAVGAADKVFELLHRTPRYR--------ESSAQREAP--------RGEIQFENVDLYYPARPQRQVLNKLSLKVEPGSIIALV 319
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A448ZA23_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZA23_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.860e-31
Identity = 71/172 (41.28%), Postives = 104/172 (60.47%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANC---------GTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            + T+  +Y  ++ K+ +AY  Y+  +  LP LVTALV+FYGG LV  G ++SG++VSF++YL +LSD F+ + YIF+S+TQAVGAADKVFEL+ R  +  V P T+       V             G  P  C+GE+   +V+  YP+RP R +L G+S    PG +  +V
Sbjct:  513 FTTHMDKYLEMTFKSAVAYCGYATVSTSLPQLVTALVVFYGGLLVRNGSLSSGELVSFLLYLQSLSDAFSSIGYIFSSLTQAVGAADKVFELMHRDRR--VIPQTMDSNNNNGVTNQSSLVQKVRVTGVEPNECKGEVTLQDVEMHYPARPNRRVLRGMSLTVPPGSIVALV 682
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BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Match: A0A5J4XCH2_9CHLO (ATP-binding cassette sub-family B member 9 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCH2_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 3.690e-31
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 3 
Query:  312 YRTNTARYYLLSKKAGIAYFFYSCTNNLLPNLVTALVLFYGGKLVLQGDITSGKVVSFMIYLSTLSDGFNEMAYIFNSMTQAVGAADKVFELIRRKPQWDVPPPTLRDEGTAEVAANCGTVPATCRGEIEFSNVDFEYPSRPGRTILNGISFKASPGQVWLVV 800
            Y    A++Y+L +K  IAY  Y+CTN  LP  V A+VLFYGG LVL+G +++G +VSFM+Y  +L+  F  +  +F+S+T AVGAADKV EL++++P   VPP      G  +        PA   G +E  +V F YP+RP   +LNG+S K +PG+V  +V
Sbjct:  423 YGVKLAKFYVLQRKEAIAYGAYACTNTFLPTAVAAVVLFYGGNLVLEGHMSAGALVSFMLYQQSLASAFQMLGDVFSSLTAAVGAADKVVELMQQQP--GVPP-----HGALQ--------PADFAGRVELDSVAFSYPARPEVPVLNGLSLKVNPGEVVALV 570
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20423.5811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W4_ECTSI5.740e-5154.30ABC transmembrane type-1 domain-containing protein... [more]
A0A4D9CQ84_9STRA3.560e-3750.30Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A835YSY9_9STRA3.180e-3649.40ABC transporter type 1, transmembrane domain-conta... [more]
W7TKE5_9STRA3.940e-3549.70Atp-binding cassette sub-family b member 9 n=1 Tax... [more]
A0A1E7FK35_9STRA5.710e-3547.17p-loop containing nucleoside triphosphate hydrolas... [more]
A0A1Z5KDK8_FISSO6.190e-3444.51ATP-binding cassette, subfamily B (MDR/TAP), membe... [more]
A0A7S2V4D5_9STRA8.750e-3448.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
B7FY43_PHATC2.570e-3142.94Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A448ZA23_9STRA2.860e-3141.28Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A5J4XCH2_9CHLO3.690e-3143.56ATP-binding cassette sub-family B member 9 n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20423contigH-elongata_contig20423:219..4067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue2.5e-28
Seed eggNOG ortholog2880.D7G0W4
Preferred nameABCB9
KEGG koko:K02021,ko:K05653,ko:K05654,ko:K05656,ko:K05658
KEGG TC3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.201,3.A.1.209,3.A.1.21
KEGG Pathwayko02010,ko04142,ko04145,ko04612,ko04976,ko05168,ko05206,ko05226,ko05340,map02010,map04142,map04145,map04612,map04976,map05168,map05206,map05226,map05340
GOsGO:0000166,GO:0000323,GO:0001910,GO:0001911,GO:0001912,GO:0001914,GO:0001916,GO:0002237,GO:0002376,GO:0002428,GO:0002474,GO:0002475,GO:0002476,GO:0002477,GO:0002478,GO:0002479,GO:0002481,GO:0002483,GO:0002484,GO:0002485,GO:0002488,GO:0002489,GO:0002577,GO:0002579,GO:0002583,GO:0002585,GO:0002589,GO:0002591,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0002703,GO:0002704,GO:0002705,GO:0002706,GO:0002707,GO:0002708,GO:0002709,GO:0002711,GO:0002715,GO:0002716,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0003823,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005815,GO:0005856,GO:0005886,GO:0006629,GO:0006810,GO:0006857,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007034,GO:0007041,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0015421,GO:0015433,GO:0015440,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019882,GO:0019883,GO:0019884,GO:0019885,GO:0022607,GO:0022804,GO:0022857,GO:0023029,GO:0030139,GO:0030176,GO:0030554,GO:0030659,GO:0030666,GO:0030670,GO:0031047,GO:0031090,GO:0031224,GO:0031227,GO:0031341,GO:0031342,GO:0031343,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033116,GO:0033218,GO:0033220,GO:0035194,GO:0035264,GO:0035639,GO:0035672,GO:0035673,GO:0036094,GO:0040007,GO:0040029,GO:0042175,GO:0042221,GO:0042269,GO:0042270,GO:0042277,GO:0042287,GO:0042288,GO:0042590,GO:0042605,GO:0042623,GO:0042626,GO:0042802,GO:0042803,GO:0042824,GO:0042825,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043190,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044464,GO:0045088,GO:0045335,GO:0045824,GO:0045953,GO:0046907,GO:0046967,GO:0046968,GO:0046977,GO:0046978,GO:0046979,GO:0046980,GO:0046982,GO:0046983,GO:0048002,GO:0048284,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904680,GO:1904949,GO:1990351,GO:1990668
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Hectar predicted targeting categorysignal peptide
Exons6
Model size800
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20423.5811.1prot_H-elongata_contig20423.5811.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20423 2443..4055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.405159-UTR-H-elongata_contig20423:218..2851622930146.405159-UTR-H-elongata_contig20423:218..285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 219..285 -
1691679298.8184752-UTR-H-elongata_contig20423:218..2851691679298.8184752-UTR-H-elongata_contig20423:218..285Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 219..285 -
1622930146.4175732-UTR-H-elongata_contig20423:699..8841622930146.4175732-UTR-H-elongata_contig20423:699..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 700..884 -
1691679298.8287532-UTR-H-elongata_contig20423:699..8841691679298.8287532-UTR-H-elongata_contig20423:699..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 700..884 -
1622930146.4303784-UTR-H-elongata_contig20423:1364..14391622930146.4303784-UTR-H-elongata_contig20423:1364..1439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 1365..1439 -
1691679298.8365152-UTR-H-elongata_contig20423:1364..14391691679298.8365152-UTR-H-elongata_contig20423:1364..1439Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 1365..1439 -
1622930146.4451115-UTR-H-elongata_contig20423:2380..24421622930146.4451115-UTR-H-elongata_contig20423:2380..2442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 2381..2442 -
1691679298.8443322-UTR-H-elongata_contig20423:2380..24421691679298.8443322-UTR-H-elongata_contig20423:2380..2442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 2381..2442 -
1622930146.5158687-UTR-H-elongata_contig20423:4055..40671622930146.5158687-UTR-H-elongata_contig20423:4055..4067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 4056..4067 -
1691679298.8775475-UTR-H-elongata_contig20423:4055..40671691679298.8775475-UTR-H-elongata_contig20423:4055..4067Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20423 4056..4067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930146.4621503-CDS-H-elongata_contig20423:2442..25871622930146.4621503-CDS-H-elongata_contig20423:2442..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 2443..2587 -
1691679298.8516068-CDS-H-elongata_contig20423:2442..25871691679298.8516068-CDS-H-elongata_contig20423:2442..2587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 2443..2587 -
1622930146.4815478-CDS-H-elongata_contig20423:3470..35861622930146.4815478-CDS-H-elongata_contig20423:3470..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 3471..3586 -
1691679298.858927-CDS-H-elongata_contig20423:3470..35861691679298.858927-CDS-H-elongata_contig20423:3470..3586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 3471..3586 -
1622930146.4968977-CDS-H-elongata_contig20423:3917..40551622930146.4968977-CDS-H-elongata_contig20423:3917..4055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 3918..4055 -
1691679298.8667126-CDS-H-elongata_contig20423:3917..40551691679298.8667126-CDS-H-elongata_contig20423:3917..4055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20423 3918..4055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20423.5811.1

>prot_H-elongata_contig20423.5811.1 ID=prot_H-elongata_contig20423.5811.1|Name=mRNA_H-elongata_contig20423.5811.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MVIVTLLFMFYVSWRLSLVAFISVPAIVIVSKYYGSYIRKLSKLSQDKLA
EAGTVAEESLSSMPTVRSFAAEKRETKEYANTLHHNTALLLLLLHYCRIV
TALILPGTTCYRRKRASRISSTPARTTSCPIS*
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mRNA from alignment at H-elongata_contig20423:219..4067-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20423.5811.1 ID=mRNA_H-elongata_contig20423.5811.1|Name=mRNA_H-elongata_contig20423.5811.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3849bp|location=Sequence derived from alignment at H-elongata_contig20423:219..4067- (Himanthalia elongata Himel1 dioecious)
AGGAACCTGGTGATGGTTATCGTGACCCTGCTGTTCATGTTTTACGTATC
CTGGCGACTGTCGTTGGTGGCCTTCATTTCCGTGCCTGCCATCGTGATTG
TGTCCAAGTACTACGGAAGCTACATCAGGAAGCTTTCCAAGCTCAGTCAG
GTGAGAAGACTAGAAGAGGAAATAAGAAGTGCAGATTTTGGAAAGGGATA
AAATAATATGGTATACGGTACGGTACGGTATACTGTGCCGGTTACGTATG
AAATATGCATTCCTTTCCTACATGTTTCATCTCTCTGTTTATCGATTCTC
ATCGTGCCGGAGGCGTTACCGTACGCGATAACCCAAAGCACAATTTTGGC
GATGATTGATGTGGACCTATCTATGTACGCACAGCAATAGTCCACTGCCT
CGGCATGTGCAATCGACTAGTCGTTGCTCCTGTTCTCGATTAATCGTCGC
TGCGTTTCATCATTGTCTACCTTGTGTGTAGGACAAGCTGGCGGAGGCGG
GCACGGTTGCAGAAGAGAGCCTCTCTAGCATGCCAACCGTAAGGTCCTTC
GCGGCGGAGAAGAGAGAGACCAAGGAGTATGCCAACACCCTGCACCAGTG
AGAGCAAATACAATCAATCGCCGGTGGTAGATGGAGAAAGGCATATCCGG
GGTGGGGTTTAATCGGATTGTGCAATGATCCTCCGAAAACAATTGAGACG
AATCGGATTCGAGACAAATAATTTTTAATAATCTATGGTCTTCGTTTTTT
CGATCATTCCGCACATCCCGCTCATTGAAATATAGGACGAGGATATTTCA
TTCGAGTATGATAATTCACCTATGAGTCGCGACGGTCGTGACGCTGCCGA
TTGCCCGGGCGGCTCGAAAAATGATGTCATGTCGCGACATCGTCGGTGGT
GGGGATGATCGATCATTTCTCCTTGAGCAGTTTTCTTGCGCAGTCTCTAA
CTGTAGCTGTAGCTTTTTGCTTTTCTCCCACTGCGCTAGTGCTGCCTGCA
TACTTTCTTGATATAGTTTACCACGCGCACAGCAGCTGCCCTTGATATTG
CTTCAAAGACGTGCCTCTTGCCATCGATGCCGCCGCCCTGACTCCCTCGA
AATTAAGTAAAAAAAATAACATGTCATTTGCCTGTAAACAGTCACTTATT
CTAAACAAGCCGCTTGCTGTAAACAAGTCTCTTCCTGCACGAGTTCCACT
ATTACTGTACTATTACCGCACTATTACTAATATTACTGCATATCTTACCA
CTATTACTGTGCTAAAACTGCACTATTGCCACTATTACTGCACTATTGCT
ACTTTTAACGCACTATTACCACTATCACTGCACTATTACCGCACTGTTGC
CACTATTACTACACTGTTACAGCCATTACTGCACTTTTACCGCACCATTA
CTGCAATATTACCACTAATACTTTATTTAAAAGACTGTTATTACTGCACT
ATTTTAACTATTACTGCTCTATTTCCACAGTAATACCGCACTATTACTGT
TATTACTGCACTATTGTCGCATTGTTACCGCACTAATACTGCCAGGTACT
ACCTGCTATCGAAGAAAGCGGGCATCGCGTATTTCTTCTACTCCTGCACG
AACAACCTCCTGCCCAATCTCGTGACCGCCCTAGTTCTCTTTTACGGAGG
CAAATTGGTGCTTCAGGGGGATATTACGAGCGGGAAGGTTCGTACAGTGC
AATACGCGGGAATGTTGTCCCGAGCCGACGCGCGAATCGTGAACCACGCG
GGTGCTGGAGGGTGCGTGGCTCCTTTGGATCGTTGGGTTGGGGTTAGGGT
CGAGGTCATCATGTTTAAGGATAAAACTCGAGAAAGATTTGATAAGAGTG
GTCCAATGTCCAGCATGTCGAAACAGACGCGTCGTTGTGTCTGGTGTTGC
GTACGGTAAGTACTGCCGAAGTCTGCCACGGAGAGTAGGAAAGCTAACAC
CAACCTCTAGATTGTCCGAGTTCTTAAGTGTACGAGTACGCTGCTGTGCC
TGAGACGCGTGCGGTGGCCCTCGTAAGAGGATGTCGACTGCTGTGGATGC
CGTTGCTTATCGCTGCCAATGAACAGGCCTGTACGCCCCGTAATCGCTAC
AGAGAGTTTCCATTGCTATTTTCCGTACCCAATTGCGTTCGCTTTTTGCT
GCGCAAGTACTATAGTATAGTACAGTACGGTATAGTATAGTACAGTACGG
TATAGTATAGTATAGTACGGTATAGTATAGTACAGTACGGTATAGTATAG
TACAGTACGGTATAGTACAGTACGGTATAGTATAGTATAGTACAGTACGG
TATAGTATAGTATAGTACAGTACAGTACGGTATTGTTTTTACCAAATAAA
ATAAAGGAGTCATTCGTGACACCCTTGAGTGAAAAGTGTGGTGTTTTTTT
ATCCCTTCACAGAGGAAAGCTGTGTTATCTAGCGAAAGATAAACGCTTCA
CTCTCCTTCCAATGCCTGTTCTTTGCGTGTGGAGCTCTTCAGCGCGCCGG
CAGGCGTCTGTGCAGCCTCCGTTAGTATATGACATGCTTTTAAGATATAA
GTACACCGACCTCCCCCGCCCCTCCATCCTGGAGCCGGCACCGAAGTTCG
CGATTTTTACGATTTACGTGCGATTCAGGTGGTTTCGTTCATGATCTACC
TCAGCACTCTCTCCGATGGCTTTAACGAAATGGCCTACATCTTCAACTCC
ATGGTGTGTATGAGCACCCCAAACGTCGTTGATTGCTGGAAGATAGCGTG
CAATCGTATATGGGTGTGGGTGTCAAAAGCGATCTCTGTGACCTACACGA
GTCTTTTTTAAAGCATGTTTTTTTTTCTTCATAAAACGCGATTTTGTGCA
AATTGCCAGTTTTGGCGCAGCTTACAATATTTTCCGCAAACCTGCTAAAT
GTTTTTGTGCAAAAGGTTAAAATATTTTGCGCAAGACATGCTGTAGTGTT
GAATATTACGGTATATCTTTGGATGCTAAACGAGTCAACGGTGACGACGC
TCGTCCAAGTCGGGCATCTCTATTCCACCTTCTTAAGACACGACACGCGT
GTTGCGAGGCAAATGTTGTGGTCGACTGGACGAACGAAGAAGCCGAGATC
GCTTGCGTATCCCCGATGTTACCACCAAAGCTCGGTGGCTCTACTCTACA
ACGGAACTTCTATGCCGACCGCCTATGCCACAGACGCAAGCCGTGGGAGC
AGCGGACAAGGTTTTCGAGCTCATTCGACGGAAACCCCAATGGGATGTTC
CGCCGCCTACCCTGCGTGATGAAGGCACGGCAGAGGTGGCCGCCAACTGC
GGAACTGTGCCGGCAACTTGCCGGGGAGAAATAGAGTTCAGTAACGTCGA
CTTCGAGTATCCATCAAGGTACGAAGCCAGTTGATCGAATCCCTGCCTCC
CAGACCACCTACCCCAGATTGTGTGATATTATTGGTTGGAGAAGTATTGG
AGACGCGCTATGATTGGAAAACGCGAGTCGTGGCGAATTTATTGTTGAGA
GGTTGAGTCGGATCGTTGGGATCTTTGCACCCACCCACCGTTCTTTTGGT
ACCATGGTTTATATTAATGGTAGTTGCTGCCGGCGATGTCTGCTCTCACT
GAGCGCATCACAAGTGTTGGCGACAACATGGATGTGGAAGTCTAGAGTTG
ATGTGTTGCTATTTACAGTAAGCGTTGATGAATTAATGTATACTGATTTT
AGCATTGGTGCAGCCAACTTCAGGCTGTGATGGCGCGACCTCGTTTGGTG
GTGACCTTGTCTTGTTGTTTTTTGTTTTGCAGGCCAGGACGAACAATCCT
AAATGGAATTAGTTTCAAGGCCTCCCCGGGGCAGGTATGGTTAGTGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig20423:219..4067-

>mRNA_H-elongata_contig20423.5811.1 ID=mRNA_H-elongata_contig20423.5811.1|Name=mRNA_H-elongata_contig20423.5811.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig20423:219..4067- (Himanthalia elongata Himel1 dioecious)
ATGGTTATCGTGACCCTGCTGTTCATGTTTTACGTATCCTGGCGACTGTC
GTTGGTGGCCTTCATTTCCGTGCCTGCCATCGTGATTGTGTCCAAGTACT
ACGGAAGCTACATCAGGAAGCTTTCCAAGCTCAGTCAGATGGTTATCGTG
ACCCTGCTGTTCATGTTTTACGTATCCTGGCGACTGTCGTTGGTGGCCTT
CATTTCCGTGCCTGCCATCGTGATTGTGTCCAAGTACTACGGAAGCTACA
TCAGGAAGCTTTCCAAGCTCAGTCAGGACAAGCTGGCGGAGGCGGGCACG
GTTGCAGAAGAGAGCCTCTCTAGCATGCCAACCGTAAGGTCCTTCGCGGC
GGAGAAGAGAGAGACCAAGGAGTATGCCAACACCCTGCACCAGACAAGCT
GGCGGAGGCGGGCACGGTTGCAGAAGAGAGCCTCTCTAGCATGCCAACCG
TAAGGTCCTTCGCGGCGGAGAAGAGAGAGACCAAGGAGTATGCCAACACC
CTGCACCATAATACCGCACTATTACTGTTATTACTGCACTATTGTCGCAT
TGTTACCGCACTAATACTGCCAGGTACTACCTGCTATCGAAGAAAGCGGG
CATCGCGTATTTCTTCTACTCCTGCACGAACAACCTCCTGCCCAATCTCG
TGATAATACCGCACTATTACTGTTATTACTGCACTATTGTCGCATTGTTA
CCGCACTAATACTGCCAGGTACTACCTGCTATCGAAGAAAGCGGGCATCG
CGTATTTCTTCTACTCCTGCACGAACAACCTCCTGCCCAATCTCGTGA
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