mRNA_H-elongata_contig20376.5797.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A6H5KW74_9PHAE (Ribokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KW74_9PHAE) HSP 1 Score: 160 bits (404), Expect = 2.830e-45 Identity = 84/139 (60.43%), Postives = 102/139 (73.38%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGA-------NSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPDR 396
QAVMA RMG VAMV C+G+DS+G+ Y++ L +GIDC V R ATGVAQICVE+ G+ N IVIVPGANY LS DVA+A +L A+++MCQ+E+RPE L ALERGRAAGM T+FNPAPAQ+ LPDR
Sbjct: 101 QAVMARRMGVGVAMVACLGDDSYGTDYVKSLCDDGIDCGSVRRDAGAATGVAQICVEEADGSEGXXXXXNFIVIVPGANYLLSPEDVATATNRLKDAKIIMCQSEVRPEATLAALERGRAAGMTTIFNPAPAQADLPDR 239
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A7S4DH79_HETAK (Ribokinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DH79_HETAK) HSP 1 Score: 120 bits (300), Expect = 3.320e-30 Identity = 71/131 (54.20%), Postives = 86/131 (65.65%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPD 393
QAVMASRMGAKV +G +G DSFG SY+ L EGIDC V R + +TGVAQICV D G N IV+VPGAN + V +AA L GA V++CQ EI E L AL+ G+ G+IT+ N APA LP+
Sbjct: 124 QAVMASRMGAKVGFIGALGSDSFGDSYMVHLESEGIDCRHVARVEG-STGVAQICV-DREGQNFIVVVPGANGRVDAAAVGAAAPLLAGAWVVVCQGEIPTEGTLAALQLGKQQGLITILNTAPADPNLPE 252
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: I2DLY3_9BURK (Ribokinase n=25 Tax=Burkholderia TaxID=32008 RepID=I2DLY3_9BURK) HSP 1 Score: 111 bits (278), Expect = 3.260e-27 Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQ 378
QAV A+R+GA VAM+GC+G D+FG+ + L E ID + V+R ATGVA I V D GANSIV+VPGAN L + +A + GA +M+CQ E+ E ++ A++R RA G L NPAPA+
Sbjct: 50 QAVAAARLGASVAMIGCVGNDAFGARLHDALAAERIDVTHVHRIDGAATGVATITV-DASGANSIVVVPGANARLDAATIDAARDAIAGAALMVCQLEVPMETVVRAIDRARACGTPVLLNPAPAR 174
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A0X8EXU5_PSEFR (Ribokinase n=6 Tax=Pseudomonas TaxID=286 RepID=A0A0X8EXU5_PSEFR) HSP 1 Score: 109 bits (272), Expect = 2.360e-26 Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLP 390
QAV A+R+GA VAMVGC+G D++G E L EGIDC V A+GVA I V DT N+IV+VPGAN L D+ + L GA+V++CQ E+ + + L+RGR I + NPAPA LP
Sbjct: 45 QAVAAARLGASVAMVGCVGTDAYGVQLREGLEAEGIDCQAVRAVAQGASGVALIVV-DTDSQNTIVVVPGANGCLDAQDIMTVDGMLQGAKVIICQLEVPMDTVGHVLKRGRELDKIVVLNPAPASGPLP 173
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI0005D8309F (PfkB family carbohydrate kinase n=2 Tax=Burkholderia vietnamiensis TaxID=60552 RepID=UPI0005D8309F) HSP 1 Score: 111 bits (278), Expect = 3.880e-26 Identity = 61/126 (48.41%), Postives = 82/126 (65.08%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQ 378
QAV A+R+GA VAM+GC+G D+FG+ + L E ID + V+R ATGVA I V D GANSIV+VPGAN L + +A + GA +M+CQ E+ E ++ A++R RA G L NPAPA+
Sbjct: 50 QAVAAARLGASVAMIGCVGNDAFGARLHDALAAERIDLTHVHRIDGAATGVATITV-DASGANSIVVVPGANARLDAATIDAARDAIAGAALMVCQLEVPMETVVRAIDRARACGTPVLLNPAPAR 174
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A553H4U9_9PSED (Ribokinase n=1 Tax=Pseudomonas mangiferae TaxID=2593654 RepID=A0A553H4U9_9PSED) HSP 1 Score: 108 bits (270), Expect = 4.640e-26 Identity = 59/130 (45.38%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLP 390
QAV A+R+GA+VAMVGC+G+D++G+ L EGIDCS + D ++GVA I V+D N+IV++PGAN LS V + L GA++++CQ EI + L RG A G + NPAPA LP
Sbjct: 45 QAVAAARLGARVAMVGCVGDDAYGAQLRTGLEAEGIDCSALAEVADCSSGVALIVVDDNS-QNAIVVIPGANGELSASRVEALDAVLQGAQILICQLEIPSLTVAHVLCRGHALGKTVILNPAPASEALP 173
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: A0A8C4YX78_GADMO (Ribokinase n=3 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4YX78_GADMO) HSP 1 Score: 107 bits (266), Expect = 1.990e-25 Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTL 387
Q + A+++GA+ AMVG +G+D FG SY++ G++ +CV++ DVATG A I V D G N+IVIV GAN L ++ ++ L V++CQ EIRPE L+AL R + T+FNPAPA L
Sbjct: 48 QCIQAAKLGARTAMVGKVGKDFFGDSYIQNFKDNGVNTACVFQAPDVATGAASIVVNDAG-ENAIVIVAGANLLLGAAELQASLPALSRTTVLLCQLEIRPECSLQALRTARQHNVKTIFNPAPAVPDL 175
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI0005AB6EA0 (ribokinase n=1 Tax=Paraburkholderia bannensis TaxID=765414 RepID=UPI0005AB6EA0) HSP 1 Score: 106 bits (264), Expect = 2.800e-25 Identity = 62/131 (47.33%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTLPD 393
QAV A+R+GA+VAM+GC+G D+ G L EGIDC + DV TGVA I V+D N+IVIV G+N A++ +A L A+V++CQ E P+ +L AL RA G IT+ NPAPA LPD
Sbjct: 33 QAVAAARLGAQVAMIGCVGADANGERLRAGLLAEGIDCGALDTSPDVPTGVALIVVDDAS-QNAIVIVAGSNGAVTPATLARHEAVLAAAQVVVCQLETPPQAVLAALTTARALGKITILNPAPAIGPLPD 162
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: R1CT03_9FIRM (Ribokinase n=1 Tax=Caldisalinibacter kiritimatiensis TaxID=1304284 RepID=R1CT03_9FIRM) HSP 1 Score: 106 bits (264), Expect = 3.410e-25 Identity = 51/127 (40.16%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQS 381
QAV A+R+GAKV+M+G +G+D FG + ++ + +GID + R+++ +TGVA I V D G NSIV++PGAN+ ++ D+ A ++G+++++ Q EI +V+ +L++ + G T+ NPAPAQ+
Sbjct: 44 QAVAAARLGAKVSMIGKVGDDGFGKNLMDSMNSDGIDTKYIKREENTSTGVALITVNDEGD-NSIVVIPGANFKVTKEDIDKATEAIEGSKIVLLQLEIPIDVVKYSLKKAKTLGKYTILNPAPAQN 169
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Match: UPI001AAD94DE (ribokinase n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AAD94DE) HSP 1 Score: 105 bits (262), Expect = 7.560e-25 Identity = 62/129 (48.06%), Postives = 83/129 (64.34%), Query Frame = 1
Query: 1 QAVMASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQICVEDTGGANSIVIVPGANYALSTMDVASAARKLDGARVMMCQAEIRPEVILEALERGRAAGMITLFNPAPAQSTL 387
Q V A+R+GA+ AMV +GEDSFGS+Y+E + V + ATG A I V + G N+IVIV GAN L + D+A A+ + GARVM+CQ EI P+V LEAL+ +G+ T+FNPAPA + L
Sbjct: 46 QCVQAARLGARTAMVCKVGEDSFGSNYIENFRNNDVCTDFVAQTAAAATGAASIIV-NAEGQNAIVIVAGANLLLDSGDLARASEAICGARVMVCQLEISPQVSLEALKMAHNSGVKTIFNPAPAVAVL 173 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20376.5797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20376.5797.1 >prot_H-elongata_contig20376.5797.1 ID=prot_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp MASRMGAKVAMVGCMGEDSFGSSYLERLGVEGIDCSCVYRKQDVATGVAQback to top mRNA from alignment at H-elongata_contig20376:5968..6521+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20376.5797.1 ID=mRNA_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=554bp|location=Sequence derived from alignment at H-elongata_contig20376:5968..6521+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20376:5968..6521+ >mRNA_H-elongata_contig20376.5797.1 ID=mRNA_H-elongata_contig20376.5797.1|Name=mRNA_H-elongata_contig20376.5797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig20376:5968..6521+ (Himanthalia elongata Himel1 dioecious)back to top |