mRNA_H-elongata_contig203541.5785.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KHR7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR7_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.450e-23 Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 22 EAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
+ E P++ M SKYK W AM++E+ G + TF LP+G KA GS+WV S+K+ E+G I+ KAR+VA+GF + G++ +S+ P+ AS+K ++ V +E G K +DVKQAY K+
Sbjct: 110 DVEAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTETFTKAKELPEGRKAIGSKWVFSWKTNEEGLIVDFKARMVARGFSQIPGIDSHHSSSACPSAASIKTVIAVVTEKGKKLARWDVKQAYIHAKL 237
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE) HSP 1 Score: 104 bits (259), Expect = 1.950e-23 Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 19 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
++ E P++ M SKYK W AM++E+ G + TF + LP+G KA GS+WVLS+K+ E+G + KAR+VA+GF + G++ +S P+ AS+K ++ VA+E G K +DVKQAY K+
Sbjct: 138 SDVEAVPMTYKDMMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTNENGLTVDFKARMVARGFSQIPGIDFHHSSLACPSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKL 266
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: UPI0016610032 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610032) HSP 1 Score: 92.8 bits (229), Expect = 8.330e-21 Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
AW AM+ E+ ++ + T+++ D LP G A +WV K +E G +IK KARLVA+GF+++EG++ D AP SV++L+ +A++ G++ +H DVK A+ G +
Sbjct: 69 AWRAAMQXEMDAVERNKTWELAD-LPAGHHAISLKWVFKLKKDETGEVIKHKARLVARGFVQQEGIDFDDAFAPVARMESVRLLLALAAQEGWRVHHIDVKSAFLNGDL 176
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: I1R6T1_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=I1R6T1_ORYGL) HSP 1 Score: 94.0 bits (232), Expect = 8.730e-20 Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
AW AMREE+ + + T++++D LP G + G +WV K E G ++K KARLVA+GF+++ G++ + AP S+++L+ VA++ G++ +H DVK A+ G +
Sbjct: 9 AWRAAMREEMDAVNRNGTWELVD-LPHGHRPIGLKWVYKLKKNEAGKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKGWRVHHMDVKSAFLNGDL 116
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 1.070e-19 Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 1
Query: 19 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
++ E P++ M SKYK W AM++E+ G + T + P+G KA GS+WV S+K+ E+ I+ KAR+V++GF + G++ +S+ P+ AS+K + VA+E G K H DVKQA + GK+
Sbjct: 691 SDVEAVPITYKDVMCSKYKVFWEAAMKKEIDGHGKTGTLTKVKEPPEGRKAIGSKWVFSWKTNEEVLIVDFKARMVSRGFSQIPGIDFHHSSSACPSAASIKTVFAVATEEGKKLAHCDVKQAMS-GKV 818
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A446MQR5_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MQR5_TRITD) HSP 1 Score: 94.0 bits (232), Expect = 1.090e-19 Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
W KAM EEL +K + T++++ P G +A G +WV K + +GN+I+ KARLVAKG+++R G++ + AP +V++LM +A+ G++ +H DVK A+ G++
Sbjct: 940 WKKAMEEELKSIKENDTWEMVTP-PTGVRAIGLKWVFKLKKDVEGNVIRHKARLVAKGYVQRHGIDFDEVFAPVARLETVRLLMALAANEGWRVHHMDVKSAFLNGEL 1046
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438JIJ4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JIJ4_VITVI) HSP 1 Score: 93.2 bits (230), Expect = 1.150e-19 Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 399
WI+AM+ E+ ++ + T+K+ + LP+ + A G +WV K DG+I + KARLV KGF + GV+ DT AP ++++L+ +A +MG+K YH DVK A+ G
Sbjct: 11 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 115
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A8J5R314_ZIZPA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R314_ZIZPA) HSP 1 Score: 93.6 bits (231), Expect = 1.390e-19 Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 1
Query: 79 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
AW AM++E+ ++ + T+++ D LP G +A +WV K +E G ++K KARLVA+GF+++EGV+ D AP S+++L+ +A++ G++ YH DVK A+ G +
Sbjct: 150 AWRAAMQQEMDAVERNRTWELAD-LPAGHRAITLKWVFKLKKDEAGVVVKHKARLVARGFVQQEGVDFDDAFAPVARMESIRVLLALAAQEGWRVYHMDVKSAFLNGDL 257
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19 Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 1
Query: 94 MREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 405
M++E+ G + TF + LP+G KA GS+WV S+K+ E G I+ K+R++A+GF + G++ + + P+ AS+K ++ VA+EMG K H+DVKQAY K+
Sbjct: 1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKL 104
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438FT52_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT52_VITVI) HSP 1 Score: 93.2 bits (230), Expect = 2.020e-19 Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 82 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 399
WI+AM+ E+ ++ + T+K+ + LP+ + A G +WV K DG+I + KARLV KGF + GV+ DT AP ++++L+ +A +MG+K YH DVK A+ G
Sbjct: 821 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 925 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig203541.5785.1 >prot_H-elongata_contig203541.5785.1 ID=prot_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp MPSGPLNEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGback to top mRNA from alignment at H-elongata_contig203541:3..407- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig203541.5785.1 ID=mRNA_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig203541:3..407- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig203541:3..407- >mRNA_H-elongata_contig203541.5785.1 ID=mRNA_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig203541:3..407- (Himanthalia elongata Himel1 dioecious)back to top |