prot_H-elongata_contig203541.5785.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig203541.5785.1
Unique Nameprot_H-elongata_contig203541.5785.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length135
Homology
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KHR7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.450e-23
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 0
Query:    8 EAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            + E  P++    M SKYK  W  AM++E+ G   + TF     LP+G KA GS+WV S+K+ E+G I+  KAR+VA+GF +  G++   +S+  P+ AS+K ++ V +E G K   +DVKQAY   K+
Sbjct:  110 DVEAVPMTYNDVMCSKYKVFWEAAMKKEIDGHDKTETFTKAKELPEGRKAIGSKWVFSWKTNEEGLIVDFKARMVARGFSQIPGIDSHHSSSACPSAASIKTVIAVVTEKGKKLARWDVKQAYIHAKL 237          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.950e-23
Identity = 53/129 (41.09%), Postives = 81/129 (62.79%), Query Frame = 0
Query:    7 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            ++ E  P++    M SKYK  W  AM++E+ G   + TF  +  LP+G KA GS+WVLS+K+ E+G  +  KAR+VA+GF +  G++   +S   P+ AS+K ++ VA+E G K   +DVKQAY   K+
Sbjct:  138 SDVEAVPMTYKDMMCSKYKVFWEAAMKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVLSWKTNENGLTVDFKARMVARGFSQIPGIDFHHSSLACPSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKL 266          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: UPI0016610032 (hypothetical protein n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0016610032)

HSP 1 Score: 92.8 bits (229), Expect = 8.330e-21
Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   27 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            AW  AM+ E+  ++ + T+++ D LP G  A   +WV   K +E G +IK KARLVA+GF+++EG++  D  AP     SV++L+ +A++ G++ +H DVK A+  G +
Sbjct:   69 AWRAAMQXEMDAVERNKTWELAD-LPAGHHAISLKWVFKLKKDETGEVIKHKARLVARGFVQQEGIDFDDAFAPVARMESVRLLLALAAQEGWRVHHIDVKSAFLNGDL 176          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: I1R6T1_ORYGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Oryza TaxID=4527 RepID=I1R6T1_ORYGL)

HSP 1 Score: 94.0 bits (232), Expect = 8.730e-20
Identity = 41/109 (37.61%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   27 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            AW  AMREE+  +  + T++++D LP G +  G +WV   K  E G ++K KARLVA+GF+++ G++  +  AP     S+++L+ VA++ G++ +H DVK A+  G +
Sbjct:    9 AWRAAMREEMDAVNRNGTWELVD-LPHGHRPIGLKWVYKLKKNEAGKVVKHKARLVARGFVQQPGIDFDEVFAPVARMESIRLLLAVAAQKGWRVHHMDVKSAFLNGDL 116          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.070e-19
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 0
Query:    7 NEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            ++ E  P++    M SKYK  W  AM++E+ G   + T   +   P+G KA GS+WV S+K+ E+  I+  KAR+V++GF +  G++   +S+  P+ AS+K +  VA+E G K  H DVKQA + GK+
Sbjct:  691 SDVEAVPITYKDVMCSKYKVFWEAAMKKEIDGHGKTGTLTKVKEPPEGRKAIGSKWVFSWKTNEEVLIVDFKARMVSRGFSQIPGIDFHHSSSACPSAASIKTVFAVATEEGKKLAHCDVKQAMS-GKV 818          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A446MQR5_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446MQR5_TRITD)

HSP 1 Score: 94.0 bits (232), Expect = 1.090e-19
Identity = 42/108 (38.89%), Postives = 71/108 (65.74%), Query Frame = 0
Query:   28 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            W KAM EEL  +K + T++++   P G +A G +WV   K + +GN+I+ KARLVAKG+++R G++  +  AP     +V++LM +A+  G++ +H DVK A+  G++
Sbjct:  940 WKKAMEEELKSIKENDTWEMVTP-PTGVRAIGLKWVFKLKKDVEGNVIRHKARLVAKGYVQRHGIDFDEVFAPVARLETVRLLMALAANEGWRVHHMDVKSAFLNGEL 1046          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438JIJ4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JIJ4_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 1.150e-19
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   28 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 133
            WI+AM+ E+  ++ + T+K+ + LP+ + A G +WV   K   DG+I + KARLV KGF +  GV+  DT AP     ++++L+ +A +MG+K YH DVK A+  G
Sbjct:   11 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 115          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A8J5R314_ZIZPA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5R314_ZIZPA)

HSP 1 Score: 93.6 bits (231), Expect = 1.390e-19
Identity = 42/109 (38.53%), Postives = 72/109 (66.06%), Query Frame = 0
Query:   27 AWIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            AW  AM++E+  ++ + T+++ D LP G +A   +WV   K +E G ++K KARLVA+GF+++EGV+  D  AP     S+++L+ +A++ G++ YH DVK A+  G +
Sbjct:  150 AWRAAMQQEMDAVERNRTWELAD-LPAGHRAITLKWVFKLKKDEAGVVVKHKARLVARGFVQQEGVDFDDAFAPVARMESIRVLLALAAQEGWRVYHMDVKSAFLNGDL 257          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.570e-19
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 0
Query:   32 MREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI 135
            M++E+ G   + TF  +  LP+G KA GS+WV S+K+ E G I+  K+R++A+GF +  G++   + +  P+ AS+K ++ VA+EMG K  H+DVKQAY   K+
Sbjct:    1 MKKEIDGHDKTGTFTKVKELPEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKL 104          
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Match: A0A438FT52_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=4 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT52_VITVI)

HSP 1 Score: 93.2 bits (230), Expect = 2.020e-19
Identity = 43/106 (40.57%), Postives = 68/106 (64.15%), Query Frame = 0
Query:   28 WIKAMREELSGLKNSSTFKVLDGLPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAPTPAGASVKMLMVVASEMGFKTYHFDVKQAYTKG 133
            WI+AM+ E+  ++ + T+K+ + LP+ + A G +WV   K   DG+I + KARLV KGF +  GV+  DT AP     ++++L+ +A +MG+K YH DVK A+  G
Sbjct:  821 WIEAMKAEIDAIERNGTWKLTE-LPEAKNAIGVKWVFRTKFNSDGSIFRHKARLVVKGFAQVAGVDYGDTFAPVARHDTIRLLLALAGQMGWKVYHLDVKSAFLNG 925          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203541.5785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHR7_9PHAE1.450e-2340.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J7P7_9PHAE1.950e-2341.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00166100328.330e-2138.53hypothetical protein n=1 Tax=Serratia marcescens T... [more]
I1R6T1_ORYGL8.730e-2037.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBK7_9PHAE1.070e-1938.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A446MQR5_TRITD1.090e-1938.89Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A438JIJ4_VITVI1.150e-1940.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5R314_ZIZPA1.390e-1938.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4A4_9PHAE1.570e-1941.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438FT52_VITVI2.020e-1940.57Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 44..135
e-value: 1.6E-16
score: 60.7
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 24..135
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 24..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203541contigH-elongata_contig203541:3..407 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203541.5785.1mRNA_H-elongata_contig203541.5785.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig203541 3..407 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig203541.5785.1 ID=prot_H-elongata_contig203541.5785.1|Name=mRNA_H-elongata_contig203541.5785.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MPSGPLNEAETPPVSVGGGMKSKYKSAWIKAMREELSGLKNSSTFKVLDG
LPKGEKAAGSRWVLSYKSEEDGNIIKTKARLVAKGFIEREGVNCLDTSAP
TPAGASVKMLMVVASEMGFKTYHFDVKQAYTKGKI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like