mRNA_H-elongata_contig20241.5731.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20241.5731.1
Unique NamemRNA_H-elongata_contig20241.5731.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A1Y1IK20_KLENI (DUF659 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK20_KLENI)

HSP 1 Score: 66.2 bits (160), Expect = 8.140e-11
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   10 ITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVERFSSV 243
            IT   C AH +DL ++D+ +  W        +  VKFI +H KT+A++ +HS    +L P DTRF TSFIT+ER   V
Sbjct:  287 ITCSGCVAHGMDLALEDVGKEEWVSPTLKAARDLVKFITNHHKTIALFRQHSDLE-LLKPGDTRFATSFITLERLLEV 363          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A388LE59_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LE59_CHABU)

HSP 1 Score: 61.2 bits (147), Expect = 4.820e-9
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:   10 ITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHS-GGRGVL-LPNDTRFGTSFITVER 231
            I  I CAAH+++LL+KDI  IAW K+ +   +  VKFIK+HQ T+ + +R S G R VL +P + RF + ++ + R
Sbjct:  384 IPWIPCAAHTLNLLLKDISNIAWIKTVWKKGRNLVKFIKNHQSTMGLMSRCSMGDRKVLVMPTEVRFASVYLMLIR 459          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: UPI001CC3E32D (uncharacterized protein LOC122659629 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3E32D)

HSP 1 Score: 57.0 bits (136), Expect = 1.420e-7
Identity = 29/76 (38.16%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   19 IRCAAHSIDLLIKDI-VQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVERFSSV 243
            +RCAAH + LL+KDI  QI+WAK  F   K  + F+  H   LA+    +GG+ +  P  TRF ++F  ++    V
Sbjct:  184 VRCAAHGVQLLLKDIDAQISWAKEVFDKAKLVIGFMYKHGTVLALMRECTGGKELKKPCKTRFASNFFMLKSILDV 259          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A388K744_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K744_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 1.490e-7
Identity = 29/77 (37.66%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 MQGITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVER 231
            M+ +  I CAAH ++LL++DIV   +A+       K VKF+++ Q TLA++        +  P  TRFGTS++ +ER
Sbjct:   54 MRVLPWIPCAAHCLNLLLRDIVAQPFARQTMRDAHKIVKFMRNKQNTLALHKIMKKALVLKRPVKTRFGTSYVMLER 130          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A388M9H4_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M9H4_CHABU)

HSP 1 Score: 57.0 bits (136), Expect = 1.510e-7
Identity = 25/76 (32.89%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   10 ITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHS--GGRGVLLPNDTRFGTSFITVER 231
            I  + CAAH++ LL+KD+ +++W        K  VKFIKHH +T+++++  S    + +++P + RF ++F  + R
Sbjct:  383 IPWVSCAAHTLSLLLKDMAKLSWISKIVKRAKMMVKFIKHHHRTVSLFSACSLEEKKTLVMPTEVRFASTFEMLNR 458          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: UPI000511298E (uncharacterized protein LOC103958368 isoform X1 n=3 Tax=Maleae TaxID=721813 RepID=UPI000511298E)

HSP 1 Score: 56.2 bits (134), Expect = 2.790e-7
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1
Query:   22 RCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVE 228
            +CAAH IDL +KDI ++ W        K   K++  HQ  LA+  + +    +L P  TRF TSF+T++
Sbjct:  321 QCAAHCIDLTLKDIAKMKWFDDTLKHAKCVTKYLYGHQWVLALMRKFTNNTEILRPAVTRFATSFLTLQ 389          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A388L930_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L930_CHABU)

HSP 1 Score: 55.5 bits (132), Expect = 5.190e-7
Identity = 25/76 (32.89%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   10 ITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHS--GGRGVLLPNDTRFGTSFITVER 231
            I  + CAAH++ LL+KD+V++ W        K  VKFIK+H +T+++++  S    + +++P + RF ++F  + R
Sbjct:  200 IPWVPCAAHTLSLLLKDMVKLPWVSKIVKRAKMMVKFIKNHHRTVSLFSACSLEERKTLIMPTEVRFASTFEMLNR 275          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A443NSV2_9MAGN (Zf-BED domain-containing protein/DUF659 domain-containing protein/Dimer_Tnp_hAT domain-containing protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NSV2_9MAGN)

HSP 1 Score: 55.5 bits (132), Expect = 5.190e-7
Identity = 23/73 (31.51%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   25 CAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVERFSSV 243
            CAA  I+L+++DI ++ W  +     +   KFI +H   L +  +H+GG+ ++ PN+TR   +F T++   S+
Sbjct:  347 CAARRINLMLEDIEKLEWINTTTERAQSISKFIHNHSAVLNMMRKHTGGKELIQPNNTRSAANFTTLQNMVSL 419          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A388MC59_CHABU (DUF659 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MC59_CHABU)

HSP 1 Score: 55.1 bits (131), Expect = 6.970e-7
Identity = 26/77 (33.77%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   10 ITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSG---GRGVLLPNDTRFGTSFITVER 231
            I  + CAAH +++L+KDI  + W +      K  VKFIK+H +T+ +Y++ S     R ++LP +  F + F+ + R
Sbjct:   74 IPWVPCAAHCLNMLLKDICGVDWVQEVAQRAKMMVKFIKNHHRTVPLYSKCSDLVRERSLILPTEVWFASKFMMLAR 150          
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Match: A0A6A6L740_HEVBR (BED-type domain-containing protein n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6L740_HEVBR)

HSP 1 Score: 54.7 bits (130), Expect = 9.690e-7
Identity = 21/69 (30.43%), Postives = 40/69 (57.97%), Query Frame = 1
Query:   25 CAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAVYTRHSGGRGVLLPNDTRFGTSFITVER 231
            CAAH +DL++KD  +I W  +     +   +F+ ++   L +  +++ G  ++ P  TRF T+F T++R
Sbjct:  324 CAAHCLDLILKDFAKIGWINTVIEQARSITRFVYNYSVVLNMVRKYTAGNDIVEPGLTRFATNFATLKR 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20241.5731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IK20_KLENI8.140e-1142.31DUF659 domain-containing protein n=1 Tax=Klebsormi... [more]
A0A388LE59_CHABU4.820e-943.42Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI001CC3E32D1.420e-738.16uncharacterized protein LOC122659629 n=1 Tax=Telop... [more]
A0A388K744_CHABU1.490e-737.66Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A388M9H4_CHABU1.510e-732.89DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
UPI000511298E2.790e-737.68uncharacterized protein LOC103958368 isoform X1 n=... [more]
A0A388L930_CHABU5.190e-732.89DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A443NSV2_9MAGN5.190e-731.51Zf-BED domain-containing protein/DUF659 domain-con... [more]
A0A388MC59_CHABU6.970e-733.77DUF659 domain-containing protein n=1 Tax=Chara bra... [more]
A0A6A6L740_HEVBR9.690e-730.43BED-type domain-containing protein n=2 Tax=Hevea b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20241contigH-elongata_contig20241:6529..6780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size252
Cds size252
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.449242-CDS-H-elongata_contig20241:6528..67801622930138.449242-CDS-H-elongata_contig20241:6528..6780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20241 6529..6780 -
1691679295.697926-CDS-H-elongata_contig20241:6528..67801691679295.697926-CDS-H-elongata_contig20241:6528..6780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20241 6529..6780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20241.5731.1prot_H-elongata_contig20241.5731.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20241 6529..6780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20241.5731.1

>prot_H-elongata_contig20241.5731.1 ID=prot_H-elongata_contig20241.5731.1|Name=mRNA_H-elongata_contig20241.5731.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MQGITGIRCAAHSIDLLIKDIVQIAWAKSKFAGIKKCVKFIKHHQKTLAV
YTRHSGGRGVLLPNDTRFGTSFITVERFSSVSL*
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mRNA from alignment at H-elongata_contig20241:6529..6780-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20241.5731.1 ID=mRNA_H-elongata_contig20241.5731.1|Name=mRNA_H-elongata_contig20241.5731.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig20241:6529..6780- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGCATTACCGGTATCCGGTGTGCGGCGCACAGCATCGACCTCCT CATCAAGGACATCGTCCAGATCGCCTGGGCCAAATCCAAGTTCGCAGGCA TCAAGAAGTGCGTGAAGTTCATCAAGCACCACCAGAAGACTCTGGCGGTG TACACGAGGCACAGCGGAGGCCGAGGAGTTCTTCTCCCAAACGACACTCG GTTCGGTACCTCTTTCATCACGGTCGAGCGGTTCAGCAGTGTGAGTTTGT GA
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Coding sequence (CDS) from alignment at H-elongata_contig20241:6529..6780-

>mRNA_H-elongata_contig20241.5731.1 ID=mRNA_H-elongata_contig20241.5731.1|Name=mRNA_H-elongata_contig20241.5731.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig20241:6529..6780- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGCATTACCGGTATCCGGTGTGCGGCGCACAGCATCGACCTCCT
CATCAAGGACATCGTCCAGATCGCCTGGGCCAAATCCAAGTTCGCAGGCA
TCAAGAAGTGCGTGAAGTTCATCAAGCACCACCAGAAGACTCTGGCGGTG
TACACGAGGCACAGCGGAGGCCGAGGAGTTCTTCTCCCAAACGACACTCG
GTTCGGTACCTCTTTCATCACGGTCGAGCGGTTCAGCAGTGTGAGTTTGT
GAATGCAGGGCATTACCGGTATCCGGTGTGCGGCGCACAGCATCGACCTC
CTCATCAAGGACATCGTCCAGATCGCCTGGGCCAAATCCAAGTTCGCAGG
CATCAAGAAGTGCGTGAAGTTCATCAAGCACCACCAGAAGACTCTGGCGG
TGTACACGAGGCACAGCGGAGGCCGAGGAGTTCTTCTCCCAAACGACACT
CGGTTCGGTACCTCTTTCATCACGGTCGAGCGGTTCAGCAGTGTGAGTTT
GTGA
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