mRNA_H-elongata_contig20235.5727.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20235.5727.1
Unique NamemRNA_H-elongata_contig20235.5727.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20235.5727.1 vs. uniprot
Match: A0A6H5KKN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN9_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.310e-20
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 KDTAEDEAVLGYMQRIKDIGQEANAFTKSRVQTHLLISNTVQLCHRMAADKYCQLSKDYPPGDTSDFD-YDFSTD 222
            +D   D+AVLG++QRIKDIGQ    FT SR+QTH LISNTVQLCHRMA D++ QL+KDYP  +  ++D YD STD
Sbjct:   22 QDPVVDDAVLGFIQRIKDIGQGVTVFTVSRLQTHSLISNTVQLCHRMAGDQHSQLAKDYPSVEQVEYDTYDQSTD 96
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BLAST of mRNA_H-elongata_contig20235.5727.1 vs. uniprot
Match: D8LPY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY0_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.500e-20
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:    1 KDTAEDEAVLGYMQRIKDIGQEANAFTKSRVQTHLLISNTVQLCHRMAADKYCQLSKDYPPGDTSDFD-YDFSTD 222
            +D   D+AVLG++QRIKDIGQ    FT SR+QTH LISNTVQLCHRMA D++ QL+KDYP  +  ++D YD STD
Sbjct:   22 QDPVVDDAVLGFIQRIKDIGQGMTVFTVSRLQTHSLISNTVQLCHRMAGDQHSQLAKDYPSVEQVEYDTYDQSTD 96
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20235.5727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKN9_9PHAE2.310e-2062.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPY0_ECTSI4.500e-2062.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20235contigH-elongata_contig20235:4871..6835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_001710.1
Exons3
Model size222
Cds size222
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20235.5727.1prot_H-elongata_contig20235.5727.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20235 4871..6835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930138.0003755-CDS-H-elongata_contig20235:4870..49211622930138.0003755-CDS-H-elongata_contig20235:4870..4921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 4871..4921 -
1691679295.5113268-CDS-H-elongata_contig20235:4870..49211691679295.5113268-CDS-H-elongata_contig20235:4870..4921Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 4871..4921 -
1622930138.016635-CDS-H-elongata_contig20235:5751..57911622930138.016635-CDS-H-elongata_contig20235:5751..5791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 5752..5791 -
1691679295.5208774-CDS-H-elongata_contig20235:5751..57911691679295.5208774-CDS-H-elongata_contig20235:5751..5791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 5752..5791 -
1622930138.0378907-CDS-H-elongata_contig20235:6704..68351622930138.0378907-CDS-H-elongata_contig20235:6704..6835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 6705..6835 -
1691679295.533529-CDS-H-elongata_contig20235:6704..68351691679295.533529-CDS-H-elongata_contig20235:6704..6835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20235 6705..6835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20235.5727.1

>prot_H-elongata_contig20235.5727.1 ID=prot_H-elongata_contig20235.5727.1|Name=mRNA_H-elongata_contig20235.5727.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
KDTAEDEAVLGYMQRIKDIGQEANAFTKSRVQTHLLISNTVQLCHRMAAD
KYCQLSKDYPPGDTSDFDYDFSTD
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mRNA from alignment at H-elongata_contig20235:4871..6835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20235.5727.1 ID=mRNA_H-elongata_contig20235.5727.1|Name=mRNA_H-elongata_contig20235.5727.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1965bp|location=Sequence derived from alignment at H-elongata_contig20235:4871..6835- (Himanthalia elongata Himel1 dioecious)
AAGGACACGGCCGAGGACGAAGCGGTGCTGGGGTATATGCAGCGGATCAA
GGACATTGGCCAGGAGGCCAACGCGTTCACCAAGTCCCGCGTGCAGACGC
ACTTGCTCATCTCCAACACGGTTCAGCTCTGGTGGGTTTTGTGGCCAGTA
CAGTAGCTGGGTCAAGTAACCGATTCCCCTGAGTTCCAACAAAGAGGCGT
TCTGCTCCTTTTGGTCGGAGCTTTCTTTCGTCCCCCCCCCCCCCCCGCCC
CCTTTTTTTCTAAATTTGTTTGGGTTTGATTTTCTCTTTTCAGTGAAGGC
CTCGCTACCTTTTTGTCTTGTGTAAAGTACCGCATTGTGGGCTTATGCCA
TCGCCTGCTTTTGTCTTTTCCATCTTCGCTATACAGAACATCCACTCCTG
ACCACGCTAAGAGTGGGGCTGAACCACGTTCGGAGGGTTTGATTGGCTTT
ATTTATTTTTTTGAAAAAAGATGAAACGGTCAACGTGCGACTTCATTGCA
ATTTTTGTAATTTCATCTCAATTTCATGATATTTTTTAATCTTTTTTTTA
TATATATATATATATATTAATCTGAAAACTGAGGCCGGGTCTTATCGTAA
TACAAAATTTTAAATTTCCAGCCGATTTAAATTTAGGTCGAAAGCTAAAT
AACGCCTAGCCTTTATCCAATCAGAAATTTAAATAGCTGTATTCCGATAA
GACCCGGCCTGAGGGCCCGGAAAAAACAAAAGTCACTGCCTCTTAAATAG
GTACCTGGCATCGTAAAACAATTTATGTCCGGTGATGTTTTCTTGGGCAG
TTCGAGAGGCCATCGCCGCGTCATGCATCAAGCACGCTGACGAACACGAG
TATGCTATAACGGTTGACCTCATCTTATGGTGGGTGTCCCCGCCCCCACG
GGCGTCCTCTTCGCGTCCCTCTACCCATGTACTCTGTATTCCGTGTTTTC
TTCCCCCCAACCAACCGTGGAAACCCTTGTAATCCCTGTGAAAATGTCTC
TGCAATCCGATTGGTAAAATTCTGTACTATCGGACTCGCGGAAGTCATCG
AATGGCGGCCGACAAGTACTGCCAGCTGTCGAAGGTGATGACGTGCGAAG
AGTGGAAAAAGAACAGGGGAAGGACGGGGAGGCCGTCTCAAGCGCTGAGT
TGTGTCTAGATTGCTCTTGCTCCACTTCGTCGCGTCTGACAACTAGGGAT
TTTATGCTCGTTCTGTCGAGACAATGATATATAGACGGCGGAGTCATATG
TACCCGGAGTGTGAATGGTTCCATCGTGGGTTTTGTCTAGAGGAGGCGTT
TTTCTTCGTTTCGGTATGCAACAGTAGGGAGATAATCGGGATGAGGGAGA
GGGGGGGGGGGCTACAGTTGACGCCCCCCCCTCCTTACAGTACAGGTTGT
GCCCTCCTCGCCCCTCCACTAGTTTCGTTTGTTTTGTGTTTTTCGAGGAG
GATGGAGTATCCTTTGTCCTACCCGCGTGATGACCAGGGTTAAAAAAGTC
CTGAGGCTCGGTCTCCGCGGGCGCAGACCCGAGACGAAGGCGACATGCGG
GCCCCCGCAGGGGACCCCCGGGAAGGTCCCCGGAGGCCTTGCGGAGTGAC
AAAATTTGGGCTTTTCCTTTCATAACTACCCCTTCAAATTAGTCAAAATG
TTGGAATTTTAAGACAGAAGACGAAATGTTAATTAATTCAAGTTGCGGGC
TTAAACAAATTTATGTGGCAAGCCGCAGATAGGGCCTGGGAGATTGTGCA
CTGCGCGCATATTTTCCAAAACATCTTCGCCAGCGCACCGCGGCATGGAC
TTTTTTTTTCCTGGTGGTGACCCTTTCTATCTTTCCCCATCCCCTCCCCA
TTAACGCCCTTTTATTTATTTGCATTTATGCCTAATGCCGATCGTTCCGC
GCCGCGTTTCTCAGGATTATCCTCCGGGGGACACGTCGGATTTTGACTAC
GATTTCAGCACGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig20235:4871..6835-

>mRNA_H-elongata_contig20235.5727.1 ID=mRNA_H-elongata_contig20235.5727.1|Name=mRNA_H-elongata_contig20235.5727.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig20235:4871..6835- (Himanthalia elongata Himel1 dioecious)
AAGGACACGGCCGAGGACGAAGCGGTGCTGGGGTATATGCAGCGGATCAA
GGACATTGGCCAGGAGGCCAACGCGTTCACCAAGTCCCGCGTGCAGACGC
ACTTGCTCATCTCCAACACGGTTCAGCTCTGAAGGACACGGCCGAGGACG
AAGCGGTGCTGGGGTATATGCAGCGGATCAAGGACATTGGCCAGGAGGCC
AACGCGTTCACCAAGTCCCGCGTGCAGACGCACTTGCTCATCTCCAACAC
GGTTCAGCTCTGTCATCGAATGGCGGCCGACAAGTACTGCCAGCTGTCGA
AGTCATCGAATGGCGGCCGACAAGTACTGCCAGCTGTCGAAGGATTATCC
TCCGGGGGACACGTCGGATTTTGACTACGATTTCAGCACGGACGATTATC
CTCCGGGGGACACGTCGGATTTTGACTACGATTTCAGCACGGAC
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