mRNA_H-elongata_contig20234.5726.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: D8LLI1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI1_ECTSI) HSP 1 Score: 363 bits (931), Expect = 1.320e-120 Identity = 181/229 (79.04%), Postives = 202/229 (88.21%), Query Frame = 3
Query: 9 GATLLGVVAITGGAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKF 695
GA +LG V + G +PASA S AEANK+LS ++LPPVVD PGGFNTL+EGYG DG LKN+LGSSNRDP LVTWNYPKGW+V RPNTDTNKEAGTVSTGDYGRGDSA LFVA K+L+GGSSLS K+T+EGV+KKAL+QKG+NQFQSFKLK VK+G TD+ GNKYYIADFQYELLTGAGF VERKGVASV Q+GN+V AVVGATTA+RAKTVK QLQEIA SFR YEGKF
Sbjct: 69 GAAVLGAVVVGTGVPAPASAGSVAEANKRLSEYNLPPVVDVPGGFNTLLEGYGKDGALKNSLGSSNRDPILVTWNYPKGWIVQRPNTDTNKEAGTVSTGDYGRGDSAGLFVAPKSLIGGSSLSSKDTMEGVLKKALSQKGENQFQSFKLKSVKDGETDFNGNKYYIADFQYELLTGAGFTVERKGVASVTQIGNSVNAVVGATTANRAKTVKPQLQEIARSFRVYEGKF 297
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A835Z8Y2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Y2_9STRA) HSP 1 Score: 192 bits (487), Expect = 4.090e-54 Identity = 105/213 (49.30%), Postives = 135/213 (63.38%), Query Frame = 3
Query: 57 PASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLS--DKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
PASA N +L+ + LP V P G L+E YG D NR+ LVTWNYP GW+ RP+ DTN E GTV+TGDY +GDSA L V ++GG LS +K VE ++ +++ QKG NQ Q+FKLK V EGAT G +Y +F+Y+LLTGAGFIVER G S+ QVG V +V+ TTA+R K ++ +LQEIA SFR Y+G
Sbjct: 77 PASALGLKAVNARLADYGLPGVGKPPDGMKALLEIYGRD---------QNRETLLVTWNYPNGWITQRPSLDTNSEDGTVATGDYQKGDSAFLVVQPLDVLGGEKLSATNKALVEKLVLQSITQKGANQIQNFKLKKVTEGATGAKGQQYINVEFKYDLLTGAGFIVERVGYGSLTQVGKGVQSVMAVTTAARLKKLQPKLQEIATSFRVYDG 280
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A4D9DCV0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCV0_9STRA) HSP 1 Score: 173 bits (439), Expect = 6.920e-48 Identity = 96/215 (44.65%), Postives = 131/215 (60.93%), Query Frame = 3
Query: 45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
G PA AA ++ N +L+S+ LPP++D PGGF+ LVE YG G K R+ LV + YP WVV++P+ D N E GT+S GDY +GDSAA +V G + V+ +A+ QK N +Q+FK+ + GA G +Y I +F+YELLTGAGF V+RKGVASV QVG NV + ATTA+R K + + +A+SFR Y+G
Sbjct: 13 GVVQPAQAAGLSKVNGELASYGLPPILDVPGGFSPLVEVYGKAAGAKK-----ERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVTRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 222
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: W7TXP4_9STRA (Uncharacterized protein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXP4_9STRA) HSP 1 Score: 175 bits (443), Expect = 2.340e-47 Identity = 96/215 (44.65%), Postives = 131/215 (60.93%), Query Frame = 3
Query: 45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
G PA AA ++ N +L+ + LPP++D PGGF+ LVE YG G K R+ LV + YP WVV++P+ D N E GT+S GDY +GDSAA +V G + V+K+A+ QK N +Q+FK+ + GA G +Y I +F+YELLTGAGF V+RKGVASV QVG NV + ATTA+R K + + +A+SFR Y+G
Sbjct: 104 GVVQPAQAAGLSKVNSELAGYGLPPILDVPGGFSPLVEVYGKAAGAKK-----ERETLLVQFLYPSLWVVSKPSIDKNGEEGTISAGDYQKGDSAAFYVEEGPASGKLEQESADYFGEVVKRAIGQKSQNVYQNFKVLKKRPGAKGANGAQYTIVEFKYELLTGAGFTVDRKGVASVTQVGKNVQGLWVATTAARWKKIGNDCITMADSFRVYDG 313
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S2V7M0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7M0_9STRA) HSP 1 Score: 168 bits (425), Expect = 6.470e-45 Identity = 92/225 (40.89%), Postives = 138/225 (61.33%), Query Frame = 3
Query: 27 VVAITGGAASPASAASTAEANKKLSSFDLPPVV-DAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSD-KNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKF 695
+ + G + A A S EAN +L+++ + P + P GF+ LVE +G DG R P+L+++ YP WV+ +P+ TN E+GT + G+Y +GDSAA++V + G ++ K+ + ++ L QKG+NQ+Q+FK + GAT G KYY+ DF+YELLTGAGF ++R+GVA+V NV A+V ATT +R K + L IA+SFRAY+GK
Sbjct: 75 IAGVLGSSPQSAEAKSIKEANNELTNYGVSPFEGNVPQGFSPLVEVWGKDG---------IRPPYLISFLYPALWVIQKPSMTTNGESGTYAAGNYQKGDSAAVYVGPSEVDGNDVMAKGKDYISSIVLGGLTQKGENQYQNFKTTKIVAGATGLKGQKYYVVDFKYELLTGAGFYIDRRGVAAVTGTPKNVQAIVCATTDTRYKKLADDLHVIADSFRAYDGKI 290
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: F0YP05_AURAN (Expressed protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YP05_AURAN) HSP 1 Score: 157 bits (396), Expect = 2.850e-41 Identity = 94/231 (40.69%), Postives = 136/231 (58.87%), Query Frame = 3
Query: 48 AASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAYEGKFS*GP*RARGYLVSDD 740
A +PA A A+ N+KL LPPV P GF+ ++ D L +V +N+P W+V +P+ +TN E+GTVS GDYG+GDSAAL+V++ G DK +I K LAQKGDNQFQ+F+++ V G+ + + DF+YELLTGAGF VER+GVA+V+ V A++ TT++R K ++ +L++I +SFR Y+ S G L+ DD
Sbjct: 49 APAPALAYDLAKYNRKLDKLGLPPVAGIPDGFSPVLSSVNQDQSL------------IVQFNHPNAWLVVKPSVNTNGESGTVSAGDYGKGDSAALYVSDLPPGG-----DKAFYAKLIAKGLAQKGDNQFQNFRVRAVSPGSPNA------VVDFEYELLTGAGFTVERRGVAAVSGVAGKSQALLAVTTSARYKKLEPELRKIVDSFRVYDKVRS----VETGALLDDD 252
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A6U3V0C4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3V0C4_9STRA) HSP 1 Score: 152 bits (385), Expect = 2.210e-39 Identity = 83/200 (41.50%), Postives = 118/200 (59.00%), Query Frame = 3
Query: 87 NKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVA-NKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
N KL+S+ LPP+ + P GF+ LVE YG NR P LV++ +P W+VT P+ D N E GT+ G+Y +GD+A ++ + V S K+ + I +A++QKGD+ +Q FK+ V+ DY +Y I DF+Y LLTGAGF V+R+GVASV GN V + A+T R K ++ L+ IA SFR Y
Sbjct: 70 NAKLASYGLPPIANVPSGFSPLVEVYGK---------GRNRTPLLVSFVHPLDWIVTLPSQDVNGEDGTIQAGEYAKGDTATFYILPDSGKVDNISEQPKDFFKNAISRAISQKGDSIYQDFKITKVEPVKGDYNNQQYVICDFKYTLLTGAGFEVDRQGVASVTSEGNAVEVLWTASTRQRYKKLEEGLRSIAGSFRVY 260
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7R9WJF7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJF7_9STRA) HSP 1 Score: 149 bits (375), Expect = 8.140e-38 Identity = 87/214 (40.65%), Postives = 126/214 (58.88%), Query Frame = 3
Query: 45 GAASPASAASTAEANKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFV-ANKALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
G +PA AA ++ N KL + LP + P GF+ L+E +G +NR P LV + +P WVVT P+ D N E GTV G+YG+GD+A FV ++ V + K+ E V++KA++QK N +Q+FK+ ++ Y Y I DF+Y+L+TGAGF V+RK VASV G V A+ A+TA R K ++ L++IA+SFR Y
Sbjct: 68 GPVAPAHAAKLSKVNAKLEALGLPAMGKVPDGFSPLLELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTVQAGEYGKGDTATFFVYEDEGNVADIASQPKSFFENVLQKAISQKSANIYQNFKVTNIQPTKGGYQDQTYMIVDFKYQLVTGAGFEVDRKAVASVTSQGKAVEALWCASTAVRYKKLEPALRDIASSFRVY 272
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S4MBN6_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBN6_9STRA) HSP 1 Score: 148 bits (373), Expect = 1.580e-37 Identity = 84/200 (42.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query: 87 NKKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANK-ALVGGSSLSDKNTVEGVIKKALAQKGDNQFQSFKLKGVKEGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGNNVAAVVGATTASRAKTVKSQLQEIANSFRAY 683
N KL+S LP + P GF+ L E +G +NR P LV + +P WVVT P+ D N E GT+ G+YG+GD++ FV + V + K+ E V++KA++QK N +Q+FK+K ++ +Y Y I DFQY+L+TGAGF V+RK VASV GN V A+ A+TA R K ++ L++IA SFR Y
Sbjct: 82 NAKLASLGLPEMKKLPDGFSPLCELWGK---------GANRFPLLVNFAHPLDWVVTTPSLDLNSEDGTIQAGEYGKGDTSTFFVYEEPGNVADIASQPKSFFEDVLQKAISQKSANIYQNFKVKNIQPTKGEYKDQTYVIVDFQYQLVTGAGFEVDRKAVASVTSQGNAVEALWCASTAIRYKKMEPALRDIAGSFRVY 272
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Match: A0A7S2RLR6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLR6_9STRA) HSP 1 Score: 145 bits (367), Expect = 9.670e-37 Identity = 88/205 (42.93%), Postives = 121/205 (59.02%), Query Frame = 3
Query: 90 KKLSSFDLPPVVDAPGGFNTLVEGYGMDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRGDSAALFVANKALVGGSSLSD--KNTVEGVIKKALAQKGDNQFQSFKLKGVK--EGATDYAGNKYYIADFQYELLTGAGFIVERKGVASVAQVGN-NVAAVVGATTASRAKTVKSQLQEIANSFRAYEG 689
+++ + + AP GF+ +V YG +DP LVT+N P GW+V RPN D N E GTVS+GDYG+GDSAALF+ + G SL+D K E ++ + QKG++ Q FKL+ ++ E T+ YY+ DF Y LLTGAGF V RKG SV VG+ +V A++GA+T R K + L+E+A SFR Y G
Sbjct: 83 RQMQGYGIKDYKQAPDGFSPVVGFYGR--------AVPGQDPLLVTYNSPSGWLVVRPNIDNNGEDGTVSSGDYGKGDSAALFIGPP--LKGGSLADQPKEYFEKLVFAGVTQKGESMVQGFKLRKIQKLEANTE---TPYYLVDFTYTLLTGAGFEVNRKGTGSVTAVGDKSVQAMIGASTDVRFKKTEPLLREVAESFRVYGG 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20234.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20234.5726.1 >prot_H-elongata_contig20234.5726.1 ID=prot_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp MDGGLKNTLGSSNRDPFLVTWNYPKGWVVTRPNTDTNKEAGTVSTGDYGRback to top mRNA from alignment at H-elongata_contig20234:3083..6940+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20234.5726.1 ID=mRNA_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3858bp|location=Sequence derived from alignment at H-elongata_contig20234:3083..6940+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20234:3083..6940+ >mRNA_H-elongata_contig20234.5726.1 ID=mRNA_H-elongata_contig20234.5726.1|Name=mRNA_H-elongata_contig20234.5726.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig20234:3083..6940+ (Himanthalia elongata Himel1 dioecious)back to top |