mRNA_H-elongata_contig20180.5703.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20180.5703.1
Unique NamemRNA_H-elongata_contig20180.5703.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.790e-32
Identity = 169/354 (47.74%), Postives = 194/354 (54.80%), Query Frame = 1 
Query:  181 IKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEMRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHSVISEEGIAPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIQVLEIAARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWRKYSEPAA--------LKDLVFVTGTGTGSAVKNIPDRVG--RRGXXXXXXSARRGK-------------------------------ISRLGALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPTAMAGCLVVSAQDLVAWASAQDLG 1119
            +K +KGGVN GPDMVT                       MR       XXXXXXXXXXXXXXXXXXXXXXXX  S + EEG++PD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +A +V+EIA +TGAIP SSLD DFEVDVS LP AIAKVK R TL+ IL VWR+ S  A         L+DLVFVTGTG+ +     PD              SA  GK                               +  +G      AA  G  GW+  R SDRSF LGR+L E LRTA++PPL+A     +AGCLVV  +DL  WA+AQ+ G
Sbjct:  785 MKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXSKLLEEGMSPDPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAA--GRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDLETWAAAQEGG 1136
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-10
Identity = 53/167 (31.74%), Postives = 72/167 (43.11%), Query Frame = 1 
Query:  619 AARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWRKYSE----PAALKDLVFVTGTGTGSAVKNIPDRVGRRGXXXXXXSARRGKISRLGALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPTAMAGCLVVSAQDLVAWASA 1107
            A   GA+P S LD D+E DVS LP A+A++KVRA L+ +L   R        PAA +DLVFV GTG   +V+                                                +R F++   L+  L T Y+PPL A  P   AGC+ V  + + AW +A
Sbjct:   21 ATARGALPDSVLDSDWEFDVSALPPAVARLKVRAVLRGVLAAARSXXXXXXAPAA-EDLVFVCGTGVQRSVRGA---------------------------------------------HERRFDMRSYLSAVLATEYTPPLAAHTPPMQAGCIAVPRERVAAWIAA 141
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A812N679_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N679_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-5
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   10 TGQAAIQACGKGGQWQRALELLALLEAR--PSGATEYNCAMMAC-VDGSEPVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEMR 303
            T  AA+ A  +   W  A  L   LE +  P+    YN AM AC V   + V+ +  L R+ R         D+VTYTSAI+ACAA   W+TAL LL E++
Sbjct:  113 THGAALSAFQRAEDWSAATLLFGELEQKQCPANLIMYNAAMGACGVRWRQAVQLMSELSRVSR------VDRDVVTYTSAISACAAAHRWQTALHLLAELQ 207
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A813E342_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E342_POLGL)

HSP 1 Score: 54.3 bits (129), Expect = 6.820e-5
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:   25 IQACGKGGQWQRALELL-ALLEARPSGA--TEYNCAMMACVDGSEPVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEM 300
            I A GK  +WQ A+ +L A L++    A     N A  AC  G  P  AL +L+   R +     GPD+ TY++AI+A    G+W+ AL L +E+
Sbjct:   78 ITALGKQSRWQTAVAMLTAALDSHSEDADLVALNAAAGACARGLAPATALLLLDEAGRRR----LGPDVFTYSAAISAHERAGLWQAALSLFEEL 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLG9_ECTSI8.790e-3247.74PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YR37_9STRA2.300e-1031.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812N679_9DINO1.980e-539.60Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813E342_POLGL6.820e-536.84Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20180contigH-elongata_contig20180:271..2681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.0
Seed ortholog evalue3.8e-29
Seed eggNOG ortholog2880.D8LLG9
KEGG koko:K17710
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons5
Model size1149
Cds size1149
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20180.5703.1prot_H-elongata_contig20180.5703.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20180 271..2681 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930135.523743-CDS-H-elongata_contig20180:270..3781622930135.523743-CDS-H-elongata_contig20180:270..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 271..378 +
1691679294.423572-CDS-H-elongata_contig20180:270..3781691679294.423572-CDS-H-elongata_contig20180:270..378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 271..378 +
1622930135.5423641-CDS-H-elongata_contig20180:723..8771622930135.5423641-CDS-H-elongata_contig20180:723..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 724..877 +
1691679294.4343977-CDS-H-elongata_contig20180:723..8771691679294.4343977-CDS-H-elongata_contig20180:723..877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 724..877 +
1622930135.5671375-CDS-H-elongata_contig20180:1197..14051622930135.5671375-CDS-H-elongata_contig20180:1197..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 1198..1405 +
1691679294.445708-CDS-H-elongata_contig20180:1197..14051691679294.445708-CDS-H-elongata_contig20180:1197..1405Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 1198..1405 +
1622930135.5847757-CDS-H-elongata_contig20180:1784..20251622930135.5847757-CDS-H-elongata_contig20180:1784..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 1785..2025 +
1691679294.4562898-CDS-H-elongata_contig20180:1784..20251691679294.4562898-CDS-H-elongata_contig20180:1784..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 1785..2025 +
1622930135.603134-CDS-H-elongata_contig20180:2243..26811622930135.603134-CDS-H-elongata_contig20180:2243..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 2244..2681 +
1691679294.4779065-CDS-H-elongata_contig20180:2243..26811691679294.4779065-CDS-H-elongata_contig20180:2243..2681Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20180 2244..2681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20180.5703.1

>prot_H-elongata_contig20180.5703.1 ID=prot_H-elongata_contig20180.5703.1|Name=mRNA_H-elongata_contig20180.5703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=383bp
GGETGQAAIQACGKGGQWQRALELLALLEARPSGATEYNCAMMACVDGSE
PVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEM
RRGGKRTRPNIRSYTAAIAACGRAGMWRQALELHSVISEEGIAPDAASFN
AVISAARRGGQHDLSMELLASMLLAELSPDSITVAELLSSLSDRGKWDNA
IQVLEIAARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWR
KYSEPAALKDLVFVTGTGTGSAVKNIPDRVGRRGGGDDDDSARRGKISRL
GALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPT
AMAGCLVVSAQDLVAWASAQDLGVEASRSRKK*
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mRNA from alignment at H-elongata_contig20180:271..2681+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20180.5703.1 ID=mRNA_H-elongata_contig20180.5703.1|Name=mRNA_H-elongata_contig20180.5703.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2411bp|location=Sequence derived from alignment at H-elongata_contig20180:271..2681+ (Himanthalia elongata Himel1 dioecious)
GGGGGCGAAACTGGACAGGCCGCCATTCAGGCATGCGGAAAGGGCGGCCA
GTGGCAGCGCGCGCTCGAGCTCCTAGCGCTCCTTGAGGCGAGGCCTTCGG
GTGCAACGGTGCAGGTGAGAGCCAGGGGATGACAAGTGGAGAAAAGAGGT
AAAAAAATCGGGGGGGAGGGATTCAAGCACCTCCGTCGTCATCTCAGCTG
CTTTTCCTGGAACGGTACGTGACTTACCAGCAGAAACCTGATAGCCGTGA
GACTACAGTATTGTACTAAATACGTATCGGAAATCTCGCCGCGTTTTGTC
CGCCGGGGGTAGGACATCCCCCCTTTAGCTCTCGCTCTGAACGAGTTATC
CATCATGCAAAAATGAAGAAACGAACAGCTGTTTTCGTCGCTGTTTCTCG
CCTCCACGTCGATCATTGGTCACCCCTGCCTGTTGGGCCGTTTCGGCTGT
TAGGAATACAACTGCGCTATGATGGCGTGCGTGGACGGGAGCGAGCCTGT
GAGAGCCCTTGATATCTTGGAAAGGATTAAGAGAAGCAAGGGTGGCGTCA
ACACTGGGCCCGACATGGTGACATACACAAGCGCCATCACAGCCTGCGCC
GCCGAAGGTGAGACGCGAAAGGATCCCATGCAGAGGAAAACTAGTTCAAG
GTTGCTTAGACACGGCAATCGATAGGCTCTAATGCAAAAGATGATTCGCT
GAGGACCGTTTTACGGCGTACGAATCTCCATATCGATCAAACCCGGCTCT
CTGCGGTAGTGGTGAATCAAGGACACCGACGAGTGATTCGCCCCCTCTTC
TCCAAGGCGGAAAATTCTGCCGTCGAACTCCAAGGAGTAAATAATGACCT
ACCGATCGGTTCATTTAATTAGACTCTTACTGATATCATTGCTTATTCCC
CCGCTTCCCCTTCTTCTTCATAATCAGGCATGTGGAAAACCGCTCTTGAA
CTTCTGCAAGAAATGCGCCGAGGTGGGAAGCGCACACGGCCGAACATCAG
ATCTTACACCGCGGCCATCGCGGCCTGCGGGAGAGCGGGGATGTGGCGAC
AAGCCCTGGAGCTTCACTCCGTGATCTCGGAGGAAGGCATCGCGCCGGAC
GCGGCTAGCTTCAACGCCGTCATCAGCGCGGCGAGGTGTGTGGGTGGATG
TGTGTGCCAACCCGGAAGCTCTCCGTCCGGTTCGAGAAAAGAAAACGATT
ATCATGAAGGGTTGGCTGGCGAGTGATCGATGATGGAAACATAGTGCTAG
TGTTTTTTTTATATTGAATCGATTGATGAGACGCCGCTTGGCATTTACAC
CTTGCGCTACTTTCCGAATCTTGTATGAGTTATTTGTATTACTTTTGCTA
TCTAAATCTTCGCTTTGTCTCATTAGTCTATGCATATTTCGCGCTTTTAT
TTATCGTTGATTCAAAACCCGGATGCGTGCCACGCAAACCAGATAGCATT
TCTCCGCCTAATGCAGCACAACATTTCCCCCCCACGGCCCCACCATTAAC
CCCTCCAAACGAAGGCGCGGTGGTCAACACGACCTCTCCATGGAGTTGCT
TGCATCGATGCTGCTGGCCGAGCTGAGCCCCGATAGCATCACTGTCGCCG
AGCTCTTGTCGTCCCTGTCGGACCGCGGCAAGTGGGACAACGCAATCCAA
GTTCTGGAAATCGCGGCGCGAACGGGTGCCATCCCACCGTCGTCGTTGGA
CGGAGACTTCGAGGTAGACGTCAGCCATCTCCCTTCTGCGATCGCAAAGG
TCAAGGTGTGTAAAAAACATGGCGGCTCGAAACCGCGCGCGCCTATTTAT
TTCTCTTATTTACATTTGGATGATCGATCGCTTCGGTTTTACCCGAAATA
TCATCGTGCTTGCCGGACGGTCTTCGGGCCCCTTACGCAAGACGGAAATT
GCACAGGGATACAAGGCGGGAAATTTCTCTTCTCCTTTTTTTACAAAATG
GTTACGACTTTCACTTTCCTCAGGTGCGCGCGACGCTAAAAAATATCCTT
GGGGTGTGGAGAAAATACAGTGAACCCGCTGCGCTGAAAGACCTGGTTTT
CGTCACCGGCACGGGCACAGGGAGCGCCGTAAAAAACATCCCTGATCGCG
TTGGGCGGCGAGGCGGCGGCGATGACGATGACTCCGCTAGACGAGGGAAA
ATATCAAGGCTCGGGGCTTTGCGCCACTCGCCAGCGGCCGAAGACGGCGA
GGAAGGATGGCAAGCGAAGCGCAACTCCGATCGCAGCTTCAACCTGGGGA
GATTGCTTGCGGAGGATCTTCGGACGGCCTACAGCCCCCCGCTGCAGGCT
TGCGCGCCAACGGCAATGGCTGGGTGCCTCGTTGTTAGTGCACAAGATCT
GGTGGCGTGGGCATCGGCGCAAGACCTAGGGGTAGAAGCGAGCAGATCAC
GGAAGAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20180:271..2681+

>mRNA_H-elongata_contig20180.5703.1 ID=mRNA_H-elongata_contig20180.5703.1|Name=mRNA_H-elongata_contig20180.5703.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2298bp|location=Sequence derived from alignment at H-elongata_contig20180:271..2681+ (Himanthalia elongata Himel1 dioecious)
GGGGGCGAAACTGGACAGGCCGCCATTCAGGCATGCGGAAAGGGCGGCCA
GTGGCAGCGCGCGCTCGAGCTCCTAGCGCTCCTTGAGGCGAGGCCTTCGG
GTGCAACGGGGGGCGAAACTGGACAGGCCGCCATTCAGGCATGCGGAAAG
GGCGGCCAGTGGCAGCGCGCGCTCGAGCTCCTAGCGCTCCTTGAGGCGAG
GCCTTCGGGTGCAACGGAATACAACTGCGCTATGATGGCGTGCGTGGACG
GGAGCGAGCCTGTGAGAGCCCTTGATATCTTGGAAAGGATTAAGAGAAGC
AAGGGTGGCGTCAACACTGGGCCCGACATGGTGACATACACAAGCGCCAT
CACAGCCTGCGCCGCCGAAGGAATACAACTGCGCTATGATGGCGTGCGTG
GACGGGAGCGAGCCTGTGAGAGCCCTTGATATCTTGGAAAGGATTAAGAG
AAGCAAGGGTGGCGTCAACACTGGGCCCGACATGGTGACATACACAAGCG
CCATCACAGCCTGCGCCGCCGAAGGCATGTGGAAAACCGCTCTTGAACTT
CTGCAAGAAATGCGCCGAGGTGGGAAGCGCACACGGCCGAACATCAGATC
TTACACCGCGGCCATCGCGGCCTGCGGGAGAGCGGGGATGTGGCGACAAG
CCCTGGAGCTTCACTCCGTGATCTCGGAGGAAGGCATCGCGCCGGACGCG
GCTAGCTTCAACGCCGTCATCAGCGCGGCGAGGCATGTGGAAAACCGCTC
TTGAACTTCTGCAAGAAATGCGCCGAGGTGGGAAGCGCACACGGCCGAAC
ATCAGATCTTACACCGCGGCCATCGCGGCCTGCGGGAGAGCGGGGATGTG
GCGACAAGCCCTGGAGCTTCACTCCGTGATCTCGGAGGAAGGCATCGCGC
CGGACGCGGCTAGCTTCAACGCCGTCATCAGCGCGGCGAGGCGCGGTGGT
CAACACGACCTCTCCATGGAGTTGCTTGCATCGATGCTGCTGGCCGAGCT
GAGCCCCGATAGCATCACTGTCGCCGAGCTCTTGTCGTCCCTGTCGGACC
GCGGCAAGTGGGACAACGCAATCCAAGTTCTGGAAATCGCGGCGCGAACG
GGTGCCATCCCACCGTCGTCGTTGGACGGAGACTTCGAGGTAGACGTCAG
CCATCTCCCTTCTGCGATCGCAAAGGTCAAGGCGCGGTGGTCAACACGAC
CTCTCCATGGAGTTGCTTGCATCGATGCTGCTGGCCGAGCTGAGCCCCGA
TAGCATCACTGTCGCCGAGCTCTTGTCGTCCCTGTCGGACCGCGGCAAGT
GGGACAACGCAATCCAAGTTCTGGAAATCGCGGCGCGAACGGGTGCCATC
CCACCGTCGTCGTTGGACGGAGACTTCGAGGTAGACGTCAGCCATCTCCC
TTCTGCGATCGCAAAGGTCAAGGTGCGCGCGACGCTAAAAAATATCCTTG
GGGTGTGGAGAAAATACAGTGAACCCGCTGCGCTGAAAGACCTGGTTTTC
GTCACCGGCACGGGCACAGGGAGCGCCGTAAAAAACATCCCTGATCGCGT
TGGGCGGCGAGGCGGCGGCGATGACGATGACTCCGCTAGACGAGGGAAAA
TATCAAGGCTCGGGGCTTTGCGCCACTCGCCAGCGGCCGAAGACGGCGAG
GAAGGATGGCAAGCGAAGCGCAACTCCGATCGCAGCTTCAACCTGGGGAG
ATTGCTTGCGGAGGATCTTCGGACGGCCTACAGCCCCCCGCTGCAGGCTT
GCGCGCCAACGGCAATGGCTGGGTGCCTCGTTGTTAGTGCACAAGATCTG
GTGGCGTGGGCATCGGCGCAAGACCTAGGGGTAGAAGCGAGCAGATCACG
GAAGAAGTGAGTGCGCGCGACGCTAAAAAATATCCTTGGGGTGTGGAGAA
AATACAGTGAACCCGCTGCGCTGAAAGACCTGGTTTTCGTCACCGGCACG
GGCACAGGGAGCGCCGTAAAAAACATCCCTGATCGCGTTGGGCGGCGAGG
CGGCGGCGATGACGATGACTCCGCTAGACGAGGGAAAATATCAAGGCTCG
GGGCTTTGCGCCACTCGCCAGCGGCCGAAGACGGCGAGGAAGGATGGCAA
GCGAAGCGCAACTCCGATCGCAGCTTCAACCTGGGGAGATTGCTTGCGGA
GGATCTTCGGACGGCCTACAGCCCCCCGCTGCAGGCTTGCGCGCCAACGG
CAATGGCTGGGTGCCTCGTTGTTAGTGCACAAGATCTGGTGGCGTGGGCA
TCGGCGCAAGACCTAGGGGTAGAAGCGAGCAGATCACGGAAGAAGTGA
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