prot_H-elongata_contig20180.5703.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig20180.5703.1
Unique Nameprot_H-elongata_contig20180.5703.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length383
Homology
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: D8LLG9_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG9_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.790e-32
Identity = 169/354 (47.74%), Postives = 194/354 (54.80%), Query Frame = 0 
Query:   61 IKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEMRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHSVISEEGIAPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAIQVLEIAARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWRKYSEPAA--------LKDLVFVTGTGTGSAVKNIPDRVG--RRGXXXXXXSARRGK-------------------------------ISRLGALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPTAMAGCLVVSAQDLVAWASAQDLG 373
            +K +KGGVN GPDMVT                       MR       XXXXXXXXXXXXXXXXXXXXXXXX  S + EEG++PD    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 +A +V+EIA +TGAIP SSLD DFEVDVS LP AIAKVK R TL+ IL VWR+ S  A         L+DLVFVTGTG+ +     PD              SA  GK                               +  +G      AA  G  GW+  R SDRSF LGR+L E LRTA++PPL+A     +AGCLVV  +DL  WA+AQ+ G
Sbjct:  785 MKANKGGVNAGPDMVTXXXXXXXXXXXXXXXXXXXXXXXMREAGPRTQXXXXXXXXXXXXXXXXXXXXXXXXXXSKLLEEGMSPDPASFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVTVGELISSLSDRGRWDDAQRVVEIAEKTGAIPASSLDSDFEVDVSQLPPAIAKVKARGTLQRILDVWRESSGNAEGGGATSSPLEDLVFVTGTGSATKPSPAPDTAAPWAGDVIDDDGSAGDGKDIVIDVTVSDDTSTTSTESARAEPTXXXSASVETMGTAASGAAA--GRGGWRVARFSDRSFGLGRVLVEHLRTAFNPPLKAQPREFVAGCLVVKVEDLETWAAAQEGG 1136
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A835YR37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR37_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.300e-10
Identity = 53/167 (31.74%), Postives = 72/167 (43.11%), Query Frame = 0 
Query:  207 AARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWRKYSE----PAALKDLVFVTGTGTGSAVKNIPDRVGRRGXXXXXXSARRGKISRLGALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPTAMAGCLVVSAQDLVAWASA 369
            A   GA+P S LD D+E DVS LP A+A++KVRA L+ +L   R        PAA +DLVFV GTG   +V+                                                +R F++   L+  L T Y+PPL A  P   AGC+ V  + + AW +A
Sbjct:   21 ATARGALPDSVLDSDWEFDVSALPPAVARLKVRAVLRGVLAAARSXXXXXXAPAA-EDLVFVCGTGVQRSVRGA---------------------------------------------HERRFDMRSYLSAVLATEYTPPLAAHTPPMQAGCIAVPRERVAAWIAA 141
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A812N679_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812N679_9DINO)

HSP 1 Score: 57.4 bits (137), Expect = 1.980e-5
Identity = 40/101 (39.60%), Postives = 53/101 (52.48%), Query Frame = 0 
Query:    4 TGQAAIQACGKGGQWQRALELLALLEAR--PSGATEYNCAMMAC-VDGSEPVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEMR 101
            T  AA+ A  +   W  A  L   LE +  P+    YN AM AC V   + V+ +  L R+ R         D+VTYTSAI+ACAA   W+TAL LL E++
Sbjct:  113 THGAALSAFQRAEDWSAATLLFGELEQKQCPANLIMYNAAMGACGVRWRQAVQLMSELSRVSR------VDRDVVTYTSAISACAAAHRWQTALHLLAELQ 207
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BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Match: A0A813E342_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813E342_POLGL)

HSP 1 Score: 54.3 bits (129), Expect = 6.820e-5
Identity = 35/95 (36.84%), Postives = 51/95 (53.68%), Query Frame = 0 
Query:    9 IQACGKGGQWQRALELL-ALLEARPSGA--TEYNCAMMACVDGSEPVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEM 100
            I A GK  +WQ A+ +L A L++    A     N A  AC  G  P  AL +L+   R +     GPD+ TY++AI+A    G+W+ AL L +E+
Sbjct:   78 ITALGKQSRWQTAVAMLTAALDSHSEDADLVALNAAAGACARGLAPATALLLLDEAGRRR----LGPDVFTYSAAISAHERAGLWQAALSLFEEL 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20180.5703.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LLG9_ECTSI8.790e-3247.74PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YR37_9STRA2.300e-1031.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A812N679_9DINO1.980e-539.60Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A813E342_POLGL6.820e-536.84Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 110..223
e-value: 9.0E-21
score: 76.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..109
e-value: 1.2E-17
score: 65.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 75..104
e-value: 1.2E-5
score: 23.2
coord: 113..146
e-value: 2.2E-5
score: 22.3
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 72..121
e-value: 7.5E-8
score: 32.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 148..173
e-value: 1.3
score: 9.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..31
score: 5.568
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 145..179
score: 8.769
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 10.819
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 180..214
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 110..144
score: 10.742
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 34..64
score: 5.579
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 139..206
coord: 7..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20180contigH-elongata_contig20180:271..2681 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20180.5703.1mRNA_H-elongata_contig20180.5703.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig20180 271..2681 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig20180.5703.1 ID=prot_H-elongata_contig20180.5703.1|Name=mRNA_H-elongata_contig20180.5703.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=383bp
GGETGQAAIQACGKGGQWQRALELLALLEARPSGATEYNCAMMACVDGSE
PVRALDILERIKRSKGGVNTGPDMVTYTSAITACAAEGMWKTALELLQEM
RRGGKRTRPNIRSYTAAIAACGRAGMWRQALELHSVISEEGIAPDAASFN
AVISAARRGGQHDLSMELLASMLLAELSPDSITVAELLSSLSDRGKWDNA
IQVLEIAARTGAIPPSSLDGDFEVDVSHLPSAIAKVKVRATLKNILGVWR
KYSEPAALKDLVFVTGTGTGSAVKNIPDRVGRRGGGDDDDSARRGKISRL
GALRHSPAAEDGEEGWQAKRNSDRSFNLGRLLAEDLRTAYSPPLQACAPT
AMAGCLVVSAQDLVAWASAQDLGVEASRSRKK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat