mRNA_H-elongata_contig20175.5698.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20175.5698.1
Unique NamemRNA_H-elongata_contig20175.5698.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: D7FI71_ECTSI (Ribosomal_L14e domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI71_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.900e-37
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1
Query:    1 QALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            +ALI+GPDTGVPRQ+IPFKRLALTD+KL IQRNAR GTI  AAK  DL AKWEASSWAKK+AKKVKRA+MTDFDRFKV
Sbjct:   35 KALIEGPDTGVPRQLIPFKRLALTDFKLPIQRNARIGTIKAAAKEADLYAKWEASSWAKKKAKKVKRAQMTDFDRFKV 112          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A835YLN7_9STRA (Ribosomal protein L14-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.440e-25
Identity = 51/80 (63.75%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            +ALIDGP+  TGV RQMIPFKRLALTD+K+ I RNAR GT+ KA    D++AKW A++WA+KRA K KRA + D DRFK+
Sbjct:   35 KALIDGPEELTGVKRQMIPFKRLALTDFKVKILRNARQGTLKKAFAEADVLAKWGATAWARKRAAKAKRASLGDLDRFKL 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A6U6K629_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A6U6K629_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.630e-23
Identity = 49/80 (61.25%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            + LIDGP+  TGV RQ+IP+KR+ALTD K+++QR+ARA T+  A K  D + KWE+SSWAKK A K KRA ++DFDRFKV
Sbjct:   35 KCLIDGPEEITGVSRQVIPYKRIALTDLKVNVQRSARAKTLKAAWKEGDTLNKWESSSWAKKLASKKKRANLSDFDRFKV 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A7S2AMT7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMT7_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.050e-21
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            + LIDGP   TGV RQ+IPFKR+ALTD+K+DI + A   T+  A +A D++ KWE++SWAKK A K KRA ++DFDRFK+
Sbjct:   35 KCLIDGPRKLTGVQRQIIPFKRIALTDFKVDIPKAASQKTLTAAIEAADILGKWESTSWAKKLAAKKKRANLSDFDRFKL 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A4D9CRD2_9STRA (Ribosomal_L14e domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRD2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.750e-21
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    7 LIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            L+DGPD+GV RQ+IP KR++LTD K+ I RNAR  T+ KA   E ++A+WE ++W KK   K KRA +TDFDRFK+
Sbjct:   39 LVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWVTEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKL 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: F0YD47_AURAN (Ribosomal_L14e domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD47_AURAN)

HSP 1 Score: 89.7 bits (221), Expect = 2.830e-21
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 QALIDGP--DTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            + L+DGP   TGV RQ+IPFKR+ALTD  + I +NAR  T+NKA    D++AKW+ASSWAKK A K KRA +TDF RF++
Sbjct:   33 KCLVDGPATKTGVARQVIPFKRVALTDIVVKIPKNARQKTLNKAWDEADVLAKWDASSWAKKLAAKKKRASLTDFQRFQL 112          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: W7TUK8_9STRA (Ribosomal protein l14 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUK8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 9.020e-21
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    7 LIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            L+DGPD+GV RQ+IP KR++LTD K+ I RNAR  T+ KA   E ++A+WE ++W KK   K KRA +TDFDRFK+
Sbjct:  101 LVDGPDSGVLRQVIPLKRVSLTDLKVKIPRNAREKTLKKAWATEKIVARWEQTTWCKKLVAKAKRAALTDFDRFKL 176          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: B5Y4G9_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y4G9_PHATC)

HSP 1 Score: 88.2 bits (217), Expect = 1.200e-20
Identity = 48/80 (60.00%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            + LIDGP+  TGV RQ+I +KRLALTD K+DIQRNAR  ++ KA    D M KWE+SSWAKK   +  RA ++DFDRFKV
Sbjct:   35 KCLIDGPESITGVTRQVISYKRLALTDLKVDIQRNARQKSLLKAWTEADTMNKWESSSWAKKLTARKTRAGLSDFDRFKV 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A6V2NE85_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NE85_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.510e-20
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 QALIDGPD--TGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            + LIDGP   TGV RQ+I + R+ALTD K++IQRNARA T+  A    D+  KW+ SSWAKK A K KRA ++DFDRFKV
Sbjct:   35 KCLIDGPTEITGVVRQVISYTRIALTDLKVNIQRNARAKTLKAAWAEADIQNKWDGSSWAKKLATKKKRASLSDFDRFKV 114          
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Match: A0A075ATE4_ROZAC (Ribosomal protein L14 domain-containing protein n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075ATE4_ROZAC)

HSP 1 Score: 86.7 bits (213), Expect = 4.040e-20
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 1
Query:    4 ALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMAKWEASSWAKKRAKKVKRARMTDFDRFKV 234
            A++DGP TGV RQ + F+RLA+T +K+ + R +R+ TI K  +AE +  KWE +SWAKK A + KRA M+DFDRFK 
Sbjct:   26 AIVDGPTTGVARQQLSFRRLAVTPFKVSVPRGSRSKTIKKVFEAEKIAEKWETTSWAKKLAVREKRAAMSDFDRFKA 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20175.5698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI71_ECTSI4.900e-3783.33Ribosomal_L14e domain-containing protein n=2 Tax=E... [more]
A0A835YLN7_9STRA7.440e-2563.75Ribosomal protein L14-domain-containing protein n=... [more]
A0A6U6K629_9STRA1.630e-2361.25Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
A0A7S2AMT7_9STRA1.050e-2157.50Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CRD2_9STRA2.750e-2156.58Ribosomal_L14e domain-containing protein n=1 Tax=N... [more]
F0YD47_AURAN2.830e-2158.75Ribosomal_L14e domain-containing protein (Fragment... [more]
W7TUK8_9STRA9.020e-2156.58Ribosomal protein l14 n=1 Tax=Nannochloropsis gadi... [more]
B5Y4G9_PHATC1.200e-2060.00Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A6V2NE85_9STRA3.510e-2058.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A075ATE4_ROZAC4.040e-2053.25Ribosomal protein L14 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20175contigH-elongata_contig20175:6324..6866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue4.4e-28
Seed eggNOG ortholog2880.D7FI71
Preferred nameRPL14
KEGG koko:K02875,ko:K12867
KEGG Pathwayko03010,ko03040,map03010,map03040
KEGG ModuleM00177,M00179,M00355
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003700,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0016236,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0030054,GO:0030684,GO:0030687,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042221,GO:0042254,GO:0042273,GO:0042788,GO:0042886,GO:0042981,GO:0043043,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043523,GO:0043524,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0060548,GO:0061919,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0140110,GO:1901214,GO:1901215,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903506,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.ribosomal large subunit biogenesis
EggNOG OGsCOG2163@1,KOG3421@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03041
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L2 domain 2
Ec32 orthologEc-23_003620.1
Exons2
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930134.9124775-CDS-H-elongata_contig20175:6323..64551622930134.9124775-CDS-H-elongata_contig20175:6323..6455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 6324..6455 +
1691679294.2196894-CDS-H-elongata_contig20175:6323..64551691679294.2196894-CDS-H-elongata_contig20175:6323..6455Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 6324..6455 +
1622930134.9297853-CDS-H-elongata_contig20175:6755..68661622930134.9297853-CDS-H-elongata_contig20175:6755..6866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 6756..6866 +
1691679294.2294955-CDS-H-elongata_contig20175:6755..68661691679294.2294955-CDS-H-elongata_contig20175:6755..6866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20175 6756..6866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20175.5698.1prot_H-elongata_contig20175.5698.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20175 6324..6866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20175.5698.1

>prot_H-elongata_contig20175.5698.1 ID=prot_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
QALIDGPDTGVPRQMIPFKRLALTDYKLDIQRNARAGTINKAAKAEDLMA
KWEASSWAKKRAKKVKRARMTDFDRFKVGF*
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mRNA from alignment at H-elongata_contig20175:6324..6866+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20175.5698.1 ID=mRNA_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at H-elongata_contig20175:6324..6866+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCATCGATGGCCCTGATACCGGCGTGCCGCGGCAAATGATCCC CTTCAAGCGCCTTGCGCTGACGGACTATAAGCTCGACATCCAGCGCAACG CGCGCGCCGGTACCATCAACAAGGCTGCCAAGGTAGAAGGCCAGACGCCT CCAGCGTTTGGAGGAAAGGGGTGGAAGATTTACCCCCAAGGTTTTCCTAG GCGTTCTAGTATCATTATTTTTTCTCGAACCCTATTTTCCCGATTTTGCC TGTTCTCTTACTCAACAAACAAGGCCTTCATGCACTGAAATATACCTATA ATATGTAGAGAAATGTGTGGTCGATTCTGGGCGATCGCTCTGGGTGACTT TCCCTTGTACAGTATCACCAGTTTTCTTGTCGCAAACAGATGTGGTTTTG TTTTTTTACATTCTGACTTGTCGTGGTGCCAGGCTGAGGACTTGATGGCC AAGTGGGAGGCATCTTCGTGGGCGAAGAAGAGGGCGAAAAAGGTCAAACG CGCACGAATGACAGATTTCGACCGTTTCAAGGTGGGGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig20175:6324..6866+

>mRNA_H-elongata_contig20175.5698.1 ID=mRNA_H-elongata_contig20175.5698.1|Name=mRNA_H-elongata_contig20175.5698.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig20175:6324..6866+ (Himanthalia elongata Himel1 dioecious)
CAGGCTCTCATCGATGGCCCTGATACCGGCGTGCCGCGGCAAATGATCCC
CTTCAAGCGCCTTGCGCTGACGGACTATAAGCTCGACATCCAGCGCAACG
CGCGCGCCGGTACCATCAACAAGGCTGCCAAGCAGGCTCTCATCGATGGC
CCTGATACCGGCGTGCCGCGGCAAATGATCCCCTTCAAGCGCCTTGCGCT
GACGGACTATAAGCTCGACATCCAGCGCAACGCGCGCGCCGGTACCATCA
ACAAGGCTGCCAAGGCTGAGGACTTGATGGCCAAGTGGGAGGCATCTTCG
TGGGCGAAGAAGAGGGCGAAAAAGGTCAAACGCGCACGAATGACAGATTT
CGACCGTTTCAAGGTGGGGTTTTGAGCTGAGGACTTGATGGCCAAGTGGG
AGGCATCTTCGTGGGCGAAGAAGAGGGCGAAAAAGGTCAAACGCGCACGA
ATGACAGATTTCGACCGTTTCAAGGTGGGGTTTTGA
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