prot_H-elongata_contig19992.5626.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19992.5626.1
Unique Nameprot_H-elongata_contig19992.5626.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19992.5626.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 54..113
e-value: 6.7E-8
score: 32.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..120
e-value: 1.3E-40
score: 141.1
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 45..118
coord: 2..74
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 45..118
coord: 2..74
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19992contigH-elongata_contig19992:3137..6798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19992.5626.1mRNA_H-elongata_contig19992.5626.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19992 3137..6798 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19992.5626.1 ID=prot_H-elongata_contig19992.5626.1|Name=mRNA_H-elongata_contig19992.5626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
LGKLTALTTLYLFRNQLSGSIPKELGKLTALITLYLFRNQLSEPIPNELG
ILTALTHLRLHENQLSGPIPKELGRLTALKYLRLSKNELSGPIPKELGRL
TALKHLRLDKNQLSGKVNMH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf