mRNA_H-elongata_contig19992.5626.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19992.5626.1
Unique NamemRNA_H-elongata_contig19992.5626.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19992.5626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19992contigH-elongata_contig19992:3137..6798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size363
Cds size363
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19992.5626.1prot_H-elongata_contig19992.5626.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19992 3137..6798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930126.629307-CDS-H-elongata_contig19992:3136..31911622930126.629307-CDS-H-elongata_contig19992:3136..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 3137..3191 +
1691679291.1713116-CDS-H-elongata_contig19992:3136..31911691679291.1713116-CDS-H-elongata_contig19992:3136..3191Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 3137..3191 +
1622930126.6483965-CDS-H-elongata_contig19992:4369..44411622930126.6483965-CDS-H-elongata_contig19992:4369..4441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 4370..4441 +
1691679291.1787364-CDS-H-elongata_contig19992:4369..44411691679291.1787364-CDS-H-elongata_contig19992:4369..4441Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 4370..4441 +
1622930126.6657333-CDS-H-elongata_contig19992:5306..53781622930126.6657333-CDS-H-elongata_contig19992:5306..5378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 5307..5378 +
1691679291.1904345-CDS-H-elongata_contig19992:5306..53781691679291.1904345-CDS-H-elongata_contig19992:5306..5378Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 5307..5378 +
1622930126.6793158-CDS-H-elongata_contig19992:6281..63531622930126.6793158-CDS-H-elongata_contig19992:6281..6353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 6282..6353 +
1691679291.2129638-CDS-H-elongata_contig19992:6281..63531691679291.2129638-CDS-H-elongata_contig19992:6281..6353Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 6282..6353 +
1622930126.6921594-CDS-H-elongata_contig19992:6706..67981622930126.6921594-CDS-H-elongata_contig19992:6706..6798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 6707..6798 +
1691679291.22245-CDS-H-elongata_contig19992:6706..67981691679291.22245-CDS-H-elongata_contig19992:6706..6798Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19992 6707..6798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19992.5626.1

>prot_H-elongata_contig19992.5626.1 ID=prot_H-elongata_contig19992.5626.1|Name=mRNA_H-elongata_contig19992.5626.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
LGKLTALTTLYLFRNQLSGSIPKELGKLTALITLYLFRNQLSEPIPNELG
ILTALTHLRLHENQLSGPIPKELGRLTALKYLRLSKNELSGPIPKELGRL
TALKHLRLDKNQLSGKVNMH*
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mRNA from alignment at H-elongata_contig19992:3137..6798+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19992.5626.1 ID=mRNA_H-elongata_contig19992.5626.1|Name=mRNA_H-elongata_contig19992.5626.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3662bp|location=Sequence derived from alignment at H-elongata_contig19992:3137..6798+ (Himanthalia elongata Himel1 dioecious)
TTGGGGAAACTCACCGCCCTTACAACTCTTTACCTTTTCCGCAACCAACT
GAGCGGTAAGACCAACATGCGTCCTACTGTTAAGGAAGAGTGCATTTTTT
ATTTAATTTTATACATCATACTTAGTATTTTGCTCCTACCGAATATTACT
CGTCGAATATCGGCCCAAACATGGTGTTAAAAATAATCTTCATATCATTA
TTTTCTAATGTGGGAGCAGAATTAGTCACGGGATTGTTGTCCATTCCGCC
AAATTATAACTTCTAGATGTGAAATATTTTTTCCACGGCTGCTCATATGA
CGGGAATTACACATTTCCTAACATTTATAACTGATTCTACCTAAACGTTT
TTGTCGATTATTAACCCCAAGATAGATTTATGTAATCTACGTATAAGTTG
TTTTAATGCTAGAGTTAAATCAGTCACGGGATGTCGTCCAATCCGCCGAA
AAATGGCTTCTTGCTCGTGAAATATATTTTCCCTGTGTCAATACAGGCAA
TTACAAACGCTTATAGTGTCCGCCTACCTCGTGAGATGTATATGGAATTA
TCGTATAGAGGGGAGAAAAACGGACATCATTGAAATCTAGACAGGTTTTG
CGTTGTGTATATTTCACGCACATTAATGATGTGGTCTACTATAATATGTA
TTGTTAATATTGTCGCGTAATGCGCTCCGTGTTTTTCTCCGGCGTCCGTT
TCTGCACAGAGCTGATACCAAAGGAGTTGGGGAAACTCACCGCTCTTACA
CATCTTAGACTTAATGAAAACGAACTGAGCGGTAAGGCCAACATGCGTCC
TACTGGAAGACATTGTAAATTTGAAATACCTTTATTTAATATTTTGGAAT
ACAGTATGAAAATTCCCTAACGTTGATTTTTGCTTTTACCGTGTATTGCT
CGTCAAGTATCAGCCCGAATTTAGTGTTATAAATAATCTACATACAAATT
GTTTCTAATCCTGGAGTTTAAACAGTCTCGGGATTTTCGTCCATTTCTCA
CAAAAATGACTTCTACGCGTGAAATATATTTTCTAAACCATTATGGCGTC
TGCCTAACTCGTGAGATACCTGTTCGATTTTGGGATTTAGGCGAGAAAAA
AGGTTATCGTTGAAATTTATCCCGTTGTCGCGTTGTGTATGTTTCACGCA
CATTGATGTAGTTTTATACTATGCAATTTTAATACCGTCATATAATGCGC
TCCGTGTTTTTCTCCTACGTATTATCTGCACAGGGTCGATACCGAAGGAG
TTGGGGAAACTCACCGCCCTTATAACTCTTTACCTTTTCCGCAACCAACT
GAGCGGTAAGGCCAACATGCGTCCCATTATATCGGGAAGAGCGCTATATA
CAACTTACTTAGTATTTTGCTTCTCCCGAATATTACTCGTTCACTATAGG
CCCAGACTTGGTGTTAAAAATAATCTAAATATTATGTTTTCTAATGTTGG
AATTGAATCAGTCACGGGATTGTCTTCCATTCGCCAGAAAATGACTTCTA
GGTGTAAAAACGATTTTCCCCATGTCCATACAGATTCCATACGTTTATGG
TGTCCGCCCACCTCGTGAGATGTATATGAAATTATCGTATAGAGGGGAGA
AAAACGGACATCGTTAAAATCTAGACCGGTTTCGCGTTGTGTCTATTTCA
CGCACATTAATGATGTGGTCTACTATAATATGTATTGTTAATATCATCAC
GTTATGCGTTCCGTGTTTTCATCCGACGTCACTTTCTGCACAGGGCCGAT
ACCGAAGGAGCTGAAGGGACTGACCACACTTATATACCTTGACCTTGGTA
ACAACCAACTTAGCGGTAAGGCCAACATGAGTTCTACTGGAAGACATTTT
TAAAACGAAATACCTTTATTTAATATTTTGCACTACAGTATGAAAATTCC
CTAGAGTCTTTTTTTTTATCGATTATTACTCGTGAAATATATTTTCCCCA
TTTCCATACAGCAATTTTAAACGCTTACAGTGTCCGCCTACCTCGTGAGA
TGTATATGGAATTATCGTGTTTAGGGGAGAAAAAAGGACATCGTTGAAAT
CTAGACCTTCGCGTTCTGTATATTTCACGCACCTGTATGATGTGGTCTAC
TATAATTTTTATTCTTAATATTGTCCCATGATATTCGCCGTGTTTTCTTC
CGGGATCACTTTCTGCGCAGAACCGATACCGAACGAGTTGGGGATACTCA
CCGCTCTTACACATCTTAGACTTCATGAAAACCAACTAAGCGGTAAGGCC
AACATGCGTCCTACTAAAAGACATTTAAAAACGAAATACCTTTATTTAAT
ATTTCGAAGTACAGTATGAAAATTCTCTAACGTCGACTTTTAGTTTCTAT
CGTTTATTGCTCGTGAAATATATTTTCCCCGTATCCATACAGGCAATTCC
AAACGCATATGGCGTCCGCCTACCTCGTGAGATGTATATGGAAGTATCGA
ATTTAGGGAAGAAAAACGGACATCGTTGAAATCTAGACCGGTTTTGCGTT
GTGTATATTTCACGTACATTCATGATGTGGTCTACTGTAATATGTGTTGT
TTATATTGTCGCGTGATGCGCTCCGTGTTTTCATAAAACGTCACTTTCGG
CACAGAGTCGATACCGAAGGAGTTGGGGAGACTCACCGCTCTTACACATC
TTAGACTTAAGGAAAACCAACTGAGGCATCCGATTGGAAGACATATATAA
AAAAACATATATAATTTTTTAATACTTTGGAGTACATTATGAAATTTCCC
TAACGTTGATTTTTGCTTCTGCAGAAAATTGCTCGTCGAATATCAGCCCG
AATTTTGGTTATAAATAATATACATACGATTTGTTTCTAATCCTGGAGAT
GAATCAGTCACGGGATTGTGGTCCATTCCCCACAAAAATGACTTCTACGT
GTAAAAATATATTTTCCCCGTGTCCCTACAGACAATTCCAAACCATTATG
GTGTCTGTCTAACTCGTGAGATACATACTCATTTTTGGGATTTAGGCGAG
AAAAAAGGTTATCGTTGAAATTTAGACCGTTTTCGCGTTGTTGTATATTT
CACGTACATCCATGATGTGGTCTACTACAATATGTATTGTTAATATTGTC
GCGTGATGCGCTCCGTGTTTTCATCCGACGTCATTTTCGGCACAGGGCCG
ATACCGAAGGAGTTGGGTAGACTCACTGCTCTTAAATATCTTAGACTTAG
TAAAAACGAACTGAGCGGTAAGGCGAACATGCGTCCTACTGGAAGACATT
TAAAAAACGAAATACCTTTATTTAATATTTTGCACAGTATAAAAATTATC
TAACGTCGGGTTTTTTTTCTATCGATTGTTGCTCGTGAAATATATTTTTC
CCGTGTCCATACAGAAAACGCTTATAGTGTCCGCCTACCTCGTGAGATGT
ATACAGAACTATCGTATAGAGGGGAGAAAAACGGACATCGTTAAAATCTA
GACCTGTTTCGCGTTCTGTATATTTCACGCACATCCATGATGTGGTTTAC
TTTAATATGTATTGTTAATATTGTCGCGTAATGCGCTCCGTGTTTGCATC
CGACGTCATTTTCGGCACAGGGCCGATACCGAAGGAGTTGGGGAGACTCA
CTGCTCTTAAACATCTTAGACTTGATAAAAACCAACTGAGCGGTAAGGTC
AACATGCATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19992:3137..6798+

>mRNA_H-elongata_contig19992.5626.1 ID=mRNA_H-elongata_contig19992.5626.1|Name=mRNA_H-elongata_contig19992.5626.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig19992:3137..6798+ (Himanthalia elongata Himel1 dioecious)
TTGGGGAAACTCACCGCCCTTACAACTCTTTACCTTTTCCGCAACCAACT
GAGCGTTGGGGAAACTCACCGCCCTTACAACTCTTTACCTTTTCCGCAAC
CAACTGAGCGGGTCGATACCGAAGGAGTTGGGGAAACTCACCGCCCTTAT
AACTCTTTACCTTTTCCGCAACCAACTGAGCGGGTCGATACCGAAGGAGT
TGGGGAAACTCACCGCCCTTATAACTCTTTACCTTTTCCGCAACCAACTG
AGCGAACCGATACCGAACGAGTTGGGGATACTCACCGCTCTTACACATCT
TAGACTTCATGAAAACCAACTAAGCGAACCGATACCGAACGAGTTGGGGA
TACTCACCGCTCTTACACATCTTAGACTTCATGAAAACCAACTAAGCGGG
CCGATACCGAAGGAGTTGGGTAGACTCACTGCTCTTAAATATCTTAGACT
TAGTAAAAACGAACTGAGCGGGCCGATACCGAAGGAGTTGGGTAGACTCA
CTGCTCTTAAATATCTTAGACTTAGTAAAAACGAACTGAGCGGGCCGATA
CCGAAGGAGTTGGGGAGACTCACTGCTCTTAAACATCTTAGACTTGATAA
AAACCAACTGAGCGGTAAGGTCAACATGCATTAAGGCCGATACCGAAGGA
GTTGGGGAGACTCACTGCTCTTAAACATCTTAGACTTGATAAAAACCAAC
TGAGCGGTAAGGTCAACATGCATTAA
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