prot_H-elongata_contig199429.5608.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig199429.5608.1
Unique Nameprot_H-elongata_contig199429.5608.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.370e-19
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0 
Query:    1 MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVD---ASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQ 96
            +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D   A++  + ++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1024 VAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDSNQTGRLTVAATEERLRRGLQPAHLAGEQ 1122
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BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.520e-19
Identity = 55/99 (55.56%), Postives = 67/99 (67.68%), Query Frame = 0 
Query:    1 MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVDASSFAT---QKSGRLTMAAAERQLRSGVGAFDLAGEQ 96
            +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D ++ A    +++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1227 VAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDGKQTGRLTVAATEERLRRGLQPAYLAGEQ 1325
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDK1_ECTSI1.370e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXS5_9PHAE3.520e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 9..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199429contigH-elongata_contig199429:378..855 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199429.5608.1mRNA_H-elongata_contig199429.5608.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig199429 363..855 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig199429.5608.1 ID=prot_H-elongata_contig199429.5608.1|Name=mRNA_H-elongata_contig199429.5608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNR
AMLGQELARAVDASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQASRI
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