mRNA_H-elongata_contig199429.5608.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig199429.5608.1
Unique NamemRNA_H-elongata_contig199429.5608.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: D8LDK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDK1_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.580e-20
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 KKETQMAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVD---ASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQ 303
            ++E  +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D   A++  + ++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1019 EEERAVAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDSNQTGRLTVAATEERLRRGLQPAHLAGEQ 1122
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BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 6.630e-20
Identity = 56/104 (53.85%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:    1 KKETQMAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNRAMLGQELARAVDASSFAT---QKSGRLTMAAAERQLRSGVGAFDLAGEQ 303
            ++E  +AF  V R LL+PVTHLSPANG RPH PA F KFAK A E+A+ I R N   L QELAR  D ++ A    +++GRLT+AA E +LR G+    LAGEQ
Sbjct: 1222 EEERAVAFRTVHRTLLSPVTHLSPANGGRPHDPAVFTKFAKPAVEKAKAIDRNNWNTLAQELARGSDDAAAAAHDGKQTGRLTVAATEERLRRGLQPAYLAGEQ 1325
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig199429.5608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDK1_ECTSI2.580e-2053.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXS5_9PHAE6.630e-2053.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig199429contigH-elongata_contig199429:363..855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size315
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig199429.5608.1prot_H-elongata_contig199429.5608.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig199429 378..855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.140105-UTR-H-elongata_contig199429:362..3771622930125.140105-UTR-H-elongata_contig199429:362..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199429 363..377 +
1691679290.5559306-UTR-H-elongata_contig199429:362..3771691679290.5559306-UTR-H-elongata_contig199429:362..377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig199429 363..377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930125.1542795-CDS-H-elongata_contig199429:377..5001622930125.1542795-CDS-H-elongata_contig199429:377..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199429 378..500 +
1691679290.5647328-CDS-H-elongata_contig199429:377..5001691679290.5647328-CDS-H-elongata_contig199429:377..500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199429 378..500 +
1622930125.169995-CDS-H-elongata_contig199429:678..8551622930125.169995-CDS-H-elongata_contig199429:678..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199429 679..855 +
1691679290.5737524-CDS-H-elongata_contig199429:678..8551691679290.5737524-CDS-H-elongata_contig199429:678..855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig199429 679..855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig199429.5608.1

>prot_H-elongata_contig199429.5608.1 ID=prot_H-elongata_contig199429.5608.1|Name=mRNA_H-elongata_contig199429.5608.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MAFSIVRRLLLAPVTHLSPANGDRPHLPANFVKFAKAAHEQARVIARKNR
AMLGQELARAVDASSFATQKSGRLTMAAAERQLRSGVGAFDLAGEQASRI
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mRNA from alignment at H-elongata_contig199429:363..855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig199429.5608.1 ID=mRNA_H-elongata_contig199429.5608.1|Name=mRNA_H-elongata_contig199429.5608.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=493bp|location=Sequence derived from alignment at H-elongata_contig199429:363..855+ (Himanthalia elongata Himel1 dioecious)
AAGAAGGAGACCCAGATGGCGTTCAGCATCGTCCGCCGTCTACTCCTGGC
GCCCGTAACGCACTTGTCTCCGGCGAACGGGGATCGGCCTCATCTCCCGG
CAAATTTCGTGAAGTTTGCCAAGGCGGCACATGAGCAGGTGACTTTCCTC
TGGTTGCCTTGTTAGCTTGTTTTGCTTTAGTGAGGTGGGATGGGGTGGAA
GCGCCCTCGCGATTTTCTAAAAGCTATACTAATAAGTTAGCCCTCGCTCT
CCCTCCCCTTTTTTATGTGGAAACCCCGCGACATCTTTATTCATTTTAAC
ATCATGCTGGGATCAGGCGAGAGTAATCGCGCGGAAAAACCGAGCGATGC
TGGGGCAAGAGCTCGCGAGGGCAGTGGACGCGTCTAGCTTCGCCACACAA
AAGAGCGGGCGTCTGACCATGGCCGCAGCCGAGCGTCAGCTGAGGAGCGG
GGTCGGAGCATTTGACCTTGCAGGGGAACAGGCGAGTCGAATA
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Coding sequence (CDS) from alignment at H-elongata_contig199429:363..855+

>mRNA_H-elongata_contig199429.5608.1 ID=mRNA_H-elongata_contig199429.5608.1|Name=mRNA_H-elongata_contig199429.5608.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig199429:363..855+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTCAGCATCGTCCGCCGTCTACTCCTGGCGCCCGTAACGCACTT
GTCTCCGGCGAACGGGGATCGGCCTCATCTCCCGGCAAATTTCGTGAAGT
TTGCCAAGGCGGCACATGAGCAGATGGCGTTCAGCATCGTCCGCCGTCTA
CTCCTGGCGCCCGTAACGCACTTGTCTCCGGCGAACGGGGATCGGCCTCA
TCTCCCGGCAAATTTCGTGAAGTTTGCCAAGGCGGCACATGAGCAGGCGA
GAGTAATCGCGCGGAAAAACCGAGCGATGCTGGGGCAAGAGCTCGCGAGG
GCAGTGGACGCGTCTAGCTTCGCCACACAAAAGAGCGGGCGTCTGACCAT
GGCCGCAGCCGAGCGTCAGCTGAGGAGCGGGGTCGGAGCATTTGACCTTG
CAGGGGAACAGGCGAGTCGAATAGCGAGAGTAATCGCGCGGAAAAACCGA
GCGATGCTGGGGCAAGAGCTCGCGAGGGCAGTGGACGCGTCTAGCTTCGC
CACACAAAAGAGCGGGCGTCTGACCATGGCCGCAGCCGAGCGTCAGCTGA
GGAGCGGGGTCGGAGCATTTGACCTTGCAGGGGAACAGGCGAGTCGAATA
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