prot_H-elongata_contig10053.55.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10053.55.1
Unique Nameprot_H-elongata_contig10053.55.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length304
Homology
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 387 bits (995), Expect = 1.630e-132
Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 0
Query:    1 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARAR--AEADDAGCALAGGLSKGLCYVNRKLQEAPSIQT---RALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 262
            MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ Q+  S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE RSLG GSVSTKEFQ+CLW+GL  VV+   A   A   D GCALAG LSKGLCYVN+K++E+ SIQ    RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG  S FLQQAAYLTGGLYLEH+ VG+ QY+FATFLPSQSCRKYLKLR QQSVDFRAACFCHK+V+ +
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDI 267          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.250e-100
Identity = 156/212 (73.58%), Postives = 181/212 (85.38%), Query Frame = 0
Query:    1 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEAD--DAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTG 210
            MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ ++  S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE R+LG GSVSTKEFQDCLW+GL  VV+   A  EA   D GCALAG LSKGLCY+NRK++E+ SIQ RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG  S FLQQAAYLTG
Sbjct:    1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG 212          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 235 bits (599), Expect = 6.110e-73
Identity = 116/260 (44.62%), Postives = 175/260 (67.31%), Query Frame = 0
Query:    7 EEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVD----GARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 262
            +E+PSLL++V DAS   W  ++ +  Q           + TFQ T+EA+++F+++YL++HRRN++ VVAC   GS ++FPT A+E+++ SL  G VS+K  Q C+ +GL  ++     G  +   A  +   +A  LS+ LC+ +RK+ E PS+QTR LVV   PD PE+YN+VMN IFSAQKA + VDC  +G  S+F+QQAA +TGG+Y   +E  ++Q L    LPSQ+CRKYL+ + Q++VDFRAACFCH++++ +
Sbjct:    2 DEDPSLLVVVFDASQGAWAAKDALAAQ--------GSTVGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEI 253          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.460e-45
Identity = 99/264 (37.50%), Postives = 146/264 (55.30%), Query Frame = 0
Query:    6 DEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECV----VDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLY---LEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            D     LL++V+D +  +W      R   D          S FQ  V + L+FV  YL++HR N + VVA  A  + +++P    + E +   G +  + +    + + L  +    +D ++  A A      +A  LS+ LC++NR ++E   ++ R LV+  +PDV + Y S+MN IFSAQK  V VD  VL +  S FLQQAAYLTGG+Y   ++H   G++QYL + +LP  S RK LKL  Q SVDFRA CFCHK+V+ 
Sbjct:   23 DAVSEGLLVLVLDTNPRYWFAEGQARDGGD----------SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYP----DAEQQDTSGSAEQSAKVNTSVLQKLRALGNAPIDASKPNATA------IAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHS--GLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVIS 264          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 161 bits (408), Expect = 5.300e-44
Identity = 98/259 (37.84%), Postives = 140/259 (54.05%), Query Frame = 0
Query:    5 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            +D  +  LL++V+D +  +W   E       Q           FQ  V + L+FV +YL++HR N + ++A  A  + +++P         S    +    +    L    E  VD A+  A A      +A  +S+ LC++NR + E   ++ R LV+  +PDV E Y S+MN IFSAQK GV VD  VL    S FLQQAAYLTGG+Y +  +  G++QYL + +LP  S RK LKL  Q SVDFRA CFCHK+V+ 
Sbjct:   26 IDVVQEGLLVLVVDTNPQYWFVNEQRSGGGPQ----------AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDPNQGDTSGSAEQSAKVNAKVMQKLQALSELPVDPAKPNATA------IAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVIS 268          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.740e-43
Identity = 88/221 (39.82%), Postives = 132/221 (59.73%), Query Frame = 0
Query:   46 STFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAG---CALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREVG-IVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            + FQ  + + L+FV +YL++HR N + ++A  A  S++++P    + +     G +    +    +   L+ + D     AE D A     A+A  LS+ LC++NR + + P ++ R LV+  APDV E Y ++MN IFSAQK  V VD  +L A  S F+QQAAYLTGG+Y +  + G ++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   51 TAFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPDQADTSGSAEQAAKVNAGVMRRLQELGD-----AELDPAKPNRTAIAASLSRSLCFINRAINDQPDLRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 262          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.890e-43
Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = 0
Query:   48 FQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            FQ  + + L+FV +YL++HR N + ++A  A  S++++P  A    H    G +  + +    + + L+ + D      + +    A+A  LS+ LC++NR + E P ++ R LVV  +PDV E Y ++MN IFSAQK  V VD  +L +  S F+QQAAYLTGG+Y +  +  G++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   43 FQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPA----HDDTSGSAEQSAKVNAVVMQRLQELSDTPMDCTKPNRT--AIAASLSRALCFINRAMNEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 252          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE)

HSP 1 Score: 159 bits (403), Expect = 2.090e-43
Identity = 93/262 (35.50%), Postives = 141/262 (53.82%), Query Frame = 0
Query:    2 SGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            +G  +     LL++VID +   W  +            +     +  Q  + + L+FV +YL++HR N + ++A  A  S++++P    E    S    +         L E  +  +D A+    A      +A  LS+ LC++NR + E P ++ R LV+  +PDV E Y ++MN IFSAQK  V VD  +L +  S F+QQAAYLTGG+Y +  +  G++QYL A +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   12 AGSSEPSVEGLLVLVIDTNPVHWFAQ-----------AAGTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPEQEDTSGSAEQAAKVNAGVMQRLQELSDAPLDNAKTNRTA------IAASLSRALCFINRAIHEDPELRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 256          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 157 bits (398), Expect = 1.120e-42
Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 0
Query:   49 QDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLE-HREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            Q  + + L+FV +YL++HR N + ++A  A  S++++P    + E     G +    +    + + L+ + D     A+ +    A+A  +S+ LC++NR + E P ++ R LVV  +PDV E Y ++MN IFSAQK  V VD  +L A  S F+QQAAYLTGG+Y + +   G++QYL + +LP  S RK LKL  Q SVDFRA CFCH++V+ 
Sbjct:   47 QQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPEQEDTSGNAEQAAKVNAGVMQRLQQLSDAPLDPAKPNRT--AIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 255          
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.780e-42
Identity = 91/259 (35.14%), Postives = 148/259 (57.14%), Query Frame = 0
Query:    5 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREV-GIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 261
            M++   + L++++D + + W +            +  D+  S FQ TV++VL+FV +YL+++R N L ++A  A  S  ++P    E E  S  G  +     ++ + + L  + +  +       +  +++G +S+GLC +NR L+E   +  R  V+  +PDVPE Y S+MN+IFSAQK  V +D  +L    S F+QQA YLTGG+Y + R + G++QYL   +LP  + RK L+   Q+SVDFRA CFCHKK + 
Sbjct:    1 MEQTGAAFLVLILDTNPSHWWRNV--------DGMPTDQSDSLFQRTVKSVLIFVSSYLLLNRSNRLILLAAHAGSSVTLYPDALSESESES--GDQIGL--IRNIVLKNLLALSE--QTHDVTSKSTTSISGSISRGLCCMNRVLKENAQLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILSEEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVS 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE1.630e-13274.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI1.250e-10073.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA6.110e-7344.62Putative general transcription factor IIH subunit ... [more]
A0A5D6XQC8_9STRA8.460e-4537.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WG36_GLOUD5.300e-4437.84Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662YF30_9STRA1.740e-4339.82Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3M6VU71_9STRA1.890e-4339.81Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
M4BTB8_HYAAE2.090e-4335.50Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
H3GBC5_PHYRM1.120e-4239.53Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
F0WU60_9STRA4.780e-4235.14General transcription factor IIH subunit putative ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004600TFIIH subunit Tfb4/GTF2H3PFAMPF03850Tfb4coord: 10..261
e-value: 4.1E-53
score: 180.6
IPR004600TFIIH subunit Tfb4/GTF2H3PANTHERPTHR12831TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATEDcoord: 6..260
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410coord: 6..231
e-value: 3.9E-40
score: 139.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10053contigH-elongata_contig10053:918..4293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10053.55.1mRNA_H-elongata_contig10053.55.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10053 869..4553 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10053.55.1 ID=prot_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp
MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQD
TVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGG
SVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKL
QEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSI
FLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFR
AACFCHKKVLGVPVSILQILPRLFYLRYKSLAKKNRWEQEDMILGWHLAN
VYT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/GTF2H3
IPR036465vWFA_dom_sf