mRNA_H-elongata_contig10053.55.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE) HSP 1 Score: 387 bits (994), Expect = 1.010e-130 Identity = 198/267 (74.16%), Postives = 228/267 (85.39%), Query Frame = 2 Query: 50 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARAR--AEADDAGCALAGGLSKGLCYVNRKLQEAPSIQT---RALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 835 MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ Q+ S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE RSLG GSVSTKEFQ+CLW+GL VV+ A A D GCALAG LSKGLCYVN+K++E+ SIQ RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG S FLQQAAYLTGGLYLEH+ VG+ QY+FATFLPSQSCRKYLKLR QQSVDFRAACFCHK+V+ + Sbjct: 1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKQRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGGDEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDI 267
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI) HSP 1 Score: 303 bits (775), Expect = 6.220e-99 Identity = 156/212 (73.58%), Postives = 181/212 (85.38%), Query Frame = 2 Query: 50 MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEAD--DAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTG 679 MS PMDEEEPSLL+I++DAS AFWTKRE +RR++ ++ S + KLS+FQDTVEA L+FVE+YLM+HRRNE+C VACTA+ S+IIFPT AMERE R+LG GSVSTKEFQDCLW+GL VV+ A EA D GCALAG LSKGLCY+NRK++E+ SIQ RALV+SG+PDVPETYNSVMNAIFSAQKAGVLVDCAVLG S FLQQAAYLTG Sbjct: 1 MSRPMDEEEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGGDEGCALAGSLSKGLCYINRKMRESSSIQARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG 212
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA) HSP 1 Score: 235 bits (599), Expect = 1.600e-71 Identity = 116/260 (44.62%), Postives = 175/260 (67.31%), Query Frame = 2 Query: 68 EEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVD----GARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAPSIFLQQAAYLTGGLYLEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLGV 835 +E+PSLL++V DAS W ++ + Q + TFQ T+EA+++F+++YL++HRRN++ VVAC GS ++FPT A+E+++ SL G VS+K Q C+ +GL ++ G + A + +A LS+ LC+ +RK+ E PS+QTR LVV PD PE+YN+VMN IFSAQKA + VDC +G S+F+QQAA +TGG+Y +E ++Q L LPSQ+CRKYL+ + Q++VDFRAACFCH++++ + Sbjct: 2 DEDPSLLVVVFDASQGAWAAKDALAAQ--------GSTVGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGLRELMSASACGTASVQPAVSSKAPIAKALSQALCFTHRKITENPSVQTRLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEI 253
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA) HSP 1 Score: 164 bits (414), Expect = 8.930e-44 Identity = 104/280 (37.14%), Postives = 151/280 (53.93%), Query Frame = 2 Query: 29 TSDRCSIMSGPM----DEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECV----VDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLY---LEHREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 TS I S P D LL++V+D + +W R D S FQ V + L+FV YL++HR N + VVA A + +++P + E + G + + + + + L + +D ++ A A +A LS+ LC++NR ++E ++ R LV+ +PDV + Y S+MN IFSAQK V VD VL + S FLQQAAYLTGG+Y ++H G++QYL + +LP S RK LKL Q SVDFRA CFCHK+V+ Sbjct: 7 TSLAARINSAPSLQHSDAVSEGLLVLVLDTNPRYWFAEGQARDGGD----------SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYP----DAEQQDTSGSAEQSAKVNTSVLQKLRALGNAPIDASKPNATA------IAASLSRALCFINRAIREQSDLRPRVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHS--GLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVIS 264
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD) HSP 1 Score: 161 bits (408), Expect = 7.660e-43 Identity = 98/259 (37.84%), Postives = 140/259 (54.05%), Query Frame = 2 Query: 62 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 +D + LL++V+D + +W E Q FQ V + L+FV +YL++HR N + ++A A + +++P S + + L E VD A+ A A +A +S+ LC++NR + E ++ R LV+ +PDV E Y S+MN IFSAQK GV VD VL S FLQQAAYLTGG+Y + + G++QYL + +LP S RK LKL Q SVDFRA CFCHK+V+ Sbjct: 26 IDVVQEGLLVLVVDTNPQYWFVNEQRSGGGPQ----------AFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDPNQGDTSGSAEQSAKVNAKVMQKLQALSELPVDPAKPNATA------IAASISRALCFINRAINEQSDLRPRILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVIS 268
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A662YF30_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YF30_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.460e-42 Identity = 88/221 (39.82%), Postives = 132/221 (59.73%), Query Frame = 2 Query: 185 STFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAG---CALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREVG-IVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 + FQ + + L+FV +YL++HR N + ++A A S++++P + + G + + + L+ + D AE D A A+A LS+ LC++NR + + P ++ R LV+ APDV E Y ++MN IFSAQK V VD +L A S F+QQAAYLTGG+Y + + G ++QYL + +LP S RK LKL Q SVDFRA CFCH++V+ Sbjct: 51 TAFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPDQADTSGSAEQAAKVNAGVMRRLQELGD-----AELDPAKPNRTAIAASLSRSLCFINRAINDQPDLRPRILVIQKAPDVSEHYIAIMNGIFSAQKKSVAVDACILSAEHSSFMQQAAYLTGGIYYKPNDAGGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 262
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA) HSP 1 Score: 159 bits (403), Expect = 2.670e-42 Identity = 86/216 (39.81%), Postives = 131/216 (60.65%), Query Frame = 2 Query: 191 FQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 FQ + + L+FV +YL++HR N + ++A A S++++P A H G + + + + + L+ + D + + A+A LS+ LC++NR + E P ++ R LVV +PDV E Y ++MN IFSAQK V VD +L + S F+QQAAYLTGG+Y + + G++QYL + +LP S RK LKL Q SVDFRA CFCH++V+ Sbjct: 43 FQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPA----HDDTSGSAEQSAKVNAVVMQRLQELSDTPMDCTKPNRT--AIAASLSRALCFINRAMNEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 252
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: M4BTB8_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BTB8_HYAAE) HSP 1 Score: 159 bits (402), Expect = 4.140e-42 Identity = 93/262 (35.50%), Postives = 141/262 (53.82%), Query Frame = 2 Query: 53 SGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHRE-VGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 +G + LL++VID + W + + + Q + + L+FV +YL++HR N + ++A A S++++P E S + L E + +D A+ A +A LS+ LC++NR + E P ++ R LV+ +PDV E Y ++MN IFSAQK V VD +L + S F+QQAAYLTGG+Y + + G++QYL A +LP S RK LKL Q SVDFRA CFCH++V+ Sbjct: 12 AGSSEPSVEGLLVLVIDTNPVHWFAQ-----------AAGTADRAGLQRLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPEQEDTSGSAEQAAKVNAGVMQRLQELSDAPLDNAKTNRTA------IAASLSRALCFINRAIHEDPELRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSSEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLIAIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 256
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM) HSP 1 Score: 157 bits (398), Expect = 1.550e-41 Identity = 85/215 (39.53%), Postives = 130/215 (60.47%), Query Frame = 2 Query: 194 QDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLE-HREVGIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 Q + + L+FV +YL++HR N + ++A A S++++P + E G + + + + L+ + D A+ + A+A +S+ LC++NR + E P ++ R LVV +PDV E Y ++MN IFSAQK V VD +L A S F+QQAAYLTGG+Y + + G++QYL + +LP S RK LKL Q SVDFRA CFCH++V+ Sbjct: 47 QQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYP----DPEQEDTSGNAEQAAKVNAGVMQRLQQLSDAPLDPAKPNRT--AIAASISRALCFINRAINEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVIS 255
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Match: F0WU60_9STRA (General transcription factor IIH subunit putative n=2 Tax=Albugo TaxID=65356 RepID=F0WU60_9STRA) HSP 1 Score: 155 bits (393), Expect = 6.440e-41 Identity = 91/259 (35.14%), Postives = 148/259 (57.14%), Query Frame = 2 Query: 62 MDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDTVEAVLLFVETYLMIHRRNELCVVACTAKGSSIIFPTLAMEREHRSLGGGSVSTKEFQDCLWEGLECVVDGARARAEADDAGCALAGGLSKGLCYVNRKLQEAPSIQTRALVVSGAPDVPETYNSVMNAIFSAQKAGVLVDCAVLGAP-SIFLQQAAYLTGGLYLEHREV-GIVQYLFATFLPSQSCRKYLKLRKQQSVDFRAACFCHKKVLG 832 M++ + L++++D + + W + + D+ S FQ TV++VL+FV +YL+++R N L ++A A S ++P E E S G + ++ + + L + + + + +++G +S+GLC +NR L+E + R V+ +PDVPE Y S+MN+IFSAQK V +D +L S F+QQA YLTGG+Y + R + G++QYL +LP + RK L+ Q+SVDFRA CFCHKK + Sbjct: 1 MEQTGAAFLVLILDTNPSHWWRNV--------DGMPTDQSDSLFQRTVKSVLIFVSSYLLLNRSNRLILLAAHAGSSVTLYPDALSESESES--GDQIGL--IRNIVLKNLLALSE--QTHDVTSKSTTSISGSISRGLCCMNRVLKENAQLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILSEEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCFCHKKAVS 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10053.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10053.55.1 >prot_H-elongata_contig10053.55.1 ID=prot_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=304bp MSGPMDEEEPSLLMIVIDASCAFWTKREFMRRQEDQQDISDDEKLSTFQDback to top mRNA from alignment at H-elongata_contig10053:869..4553+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10053.55.1 ID=mRNA_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3685bp|location=Sequence derived from alignment at H-elongata_contig10053:869..4553+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10053:869..4553+ >mRNA_H-elongata_contig10053.55.1 ID=mRNA_H-elongata_contig10053.55.1|Name=mRNA_H-elongata_contig10053.55.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1824bp|location=Sequence derived from alignment at H-elongata_contig10053:869..4553+ (Himanthalia elongata Himel1 dioecious)back to top |