mRNA_H-elongata_contig198150.5545.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig198150.5545.1
Unique NamemRNA_H-elongata_contig198150.5545.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.590e-31
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVNDLQS 171
            GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRN+AVDPVNDLQS
Sbjct:   35 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNSAVDPVNDLQS 91          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A835Z0Q5_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 8.170e-24
Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVNDLQ 168
            GDLDA+L YID+ GDVN RD +NNTPLHWACQESHFDIVGVLMSR A VDPVNDLQ
Sbjct:   13 GDLDAILTYIDEGGDVNCRDVNNNTPLHWACQESHFDIVGVLMSRGAHVDPVNDLQ 68          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A836C8I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I0_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.570e-18
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMS 132
            GDLDA+L +ID+ GDVN RD +NNTPLHWACQESHFDIVGVLMS
Sbjct:   17 GDLDAILTFIDEGGDVNCRDANNNTPLHWACQESHFDIVGVLMS 60          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A0K9RE76_SPIOL (Protein kinase domain-containing protein n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RE76_SPIOL)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-8
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 GDLDALLQYIDDNG-DVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVNDLQSTPL 180
            GDLD + + ++++G DVN RD DN TPLH A  + + ++V +LMS  A VDP +   STPL
Sbjct:   89 GDLDGIKELVEESGADVNYRDMDNRTPLHVAACQGYVEVVNLLMSMKAEVDPKDRWGSTPL 149          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A7R9GBM5_9CRUS (Palmitoyltransferase n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9GBM5_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 2.490e-8
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 GDLDALLQYIDDNG-DVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVN-DLQSTPLHYA 189
            G LD +++ +D  G DVN RD +  TPLHWA   +  D++  ++SR A +DPV  +L+STP H+A
Sbjct:   27 GVLDRVVELVDGLGFDVNARDSEGITPLHWAAINNRKDVMNYMISRGAEIDPVGGELRSTPAHWA 91          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A6J1RSH4_FRAOC (Palmitoyltransferase n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1RSH4_FRAOC)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-8
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVN-DLQSTPLHYA 189
            G L+   Q ID+  D+NQRD +N T LHWA   +  +I+   +SR A VD V  DL +TPLH+A
Sbjct:   32 GALERCKQLIDEGFDINQRDTENVTLLHWAAINNRKEIIRFYISRGALVDAVGGDLMATPLHWA 95          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: Q4L0H4_AGAAM (Membrane acyl-CoA binding protein n=1 Tax=Agave americana TaxID=39510 RepID=Q4L0H4_AGAAM)

HSP 1 Score: 55.5 bits (132), Expect = 2.150e-7
Identity = 23/47 (48.94%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNA 141
            G+ D LL++I++   VN RD +  TPLHWA    HF++V +L+SRNA
Sbjct:  237 GEADNLLRHIENGVPVNSRDSEGRTPLHWAVDRGHFNVVEILLSRNA 283          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A3S3PWC4_9ACAR (Palmitoyltransferase n=2 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3PWC4_9ACAR)

HSP 1 Score: 55.5 bits (132), Expect = 2.220e-7
Identity = 28/64 (43.75%), Postives = 41/64 (64.06%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVN-DLQSTPLHYA 189
            G +  + + I+   DVNQRD +N T LHWA   +  +IV   +S+NA +D +  DL+STPLH+A
Sbjct:   60 GAITRVQELIEAGFDVNQRDSENVTLLHWAAINNRKEIVKYFLSKNAEIDAIGGDLKSTPLHWA 123          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A6P6YD17_DERPT (Palmitoyltransferase n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YD17_DERPT)

HSP 1 Score: 55.5 bits (132), Expect = 2.230e-7
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   16 LLQYIDDNG--DVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVN-DLQSTPLHYA 189
            L Q + D+G  DVNQRDR+N T LHWA   +  ++V   +S+ A VD +  DLQST LH+A
Sbjct:  103 LCQKLIDSGRYDVNQRDRENVTLLHWASINNRLELVNYFISKGAIVDAIGGDLQSTALHWA 163          
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Match: A0A2E2R8Q7_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E2R8Q7_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.030e-7
Identity = 24/55 (43.64%), Postives = 36/55 (65.45%), Query Frame = 1
Query:    1 GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVDPVNDL 165
            GDL  +  Y+D   D+N RD + +TPLHWA  E H DIV +L++R A V+  +++
Sbjct:  162 GDLAGVQAYLDAGVDINARDENGSTPLHWAALEGHKDIVELLINRGAEVNATSEI 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig198150.5545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI6.590e-3198.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0Q5_9STRA8.170e-2483.93Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A836C8I0_9STRA3.570e-1881.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0K9RE76_SPIOL1.320e-847.54Protein kinase domain-containing protein n=2 Tax=S... [more]
A0A7R9GBM5_9CRUS2.490e-844.62Palmitoyltransferase n=1 Tax=Notodromas monacha Ta... [more]
A0A6J1RSH4_FRAOC4.650e-846.88Palmitoyltransferase n=2 Tax=Frankliniella occiden... [more]
Q4L0H4_AGAAM2.150e-748.94Membrane acyl-CoA binding protein n=1 Tax=Agave am... [more]
A0A3S3PWC4_9ACAR2.220e-743.75Palmitoyltransferase n=2 Tax=Dinothrombium tinctor... [more]
A0A6P6YD17_DERPT2.230e-749.18Palmitoyltransferase n=1 Tax=Dermatophagoides pter... [more]
A0A2E2R8Q7_9BACT3.030e-743.64Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig198150contigH-elongata_contig198150:483..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog2880.D7FWJ1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006420.1
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930119.5303519-CDS-H-elongata_contig198150:482..6711622930119.5303519-CDS-H-elongata_contig198150:482..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198150 483..671 +
1691679288.246215-CDS-H-elongata_contig198150:482..6711691679288.246215-CDS-H-elongata_contig198150:482..671Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig198150 483..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig198150.5545.1prot_H-elongata_contig198150.5545.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig198150 483..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig198150.5545.1

>prot_H-elongata_contig198150.5545.1 ID=prot_H-elongata_contig198150.5545.1|Name=mRNA_H-elongata_contig198150.5545.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
GDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNAAVD
PVNDLQSTPLHYA
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mRNA from alignment at H-elongata_contig198150:483..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig198150.5545.1 ID=mRNA_H-elongata_contig198150.5545.1|Name=mRNA_H-elongata_contig198150.5545.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig198150:483..671+ (Himanthalia elongata Himel1 dioecious)
GGTGACCTGGATGCCTTGCTGCAGTACATCGACGACAATGGAGACGTCAA CCAGCGTGATCGAGACAACAACACTCCCCTTCACTGGGCTTGCCAGGAAA GCCACTTCGATATCGTGGGGGTGCTCATGTCGAGGAATGCGGCGGTCGAT CCCGTGAACGACTTGCAGTCCACCCCCTTGCACTACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig198150:483..671+

>mRNA_H-elongata_contig198150.5545.1 ID=mRNA_H-elongata_contig198150.5545.1|Name=mRNA_H-elongata_contig198150.5545.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig198150:483..671+ (Himanthalia elongata Himel1 dioecious)
GGTGACCTGGATGCCTTGCTGCAGTACATCGACGACAATGGAGACGTCAA
CCAGCGTGATCGAGACAACAACACTCCCCTTCACTGGGCTTGCCAGGAAA
GCCACTTCGATATCGTGGGGGTGCTCATGTCGAGGAATGCGGCGGTCGAT
CCCGTGAACGACTTGCAGTCCACCCCCTTGCACTACGCCGGTGACCTGGA
TGCCTTGCTGCAGTACATCGACGACAATGGAGACGTCAACCAGCGTGATC
GAGACAACAACACTCCCCTTCACTGGGCTTGCCAGGAAAGCCACTTCGAT
ATCGTGGGGGTGCTCATGTCGAGGAATGCGGCGGTCGATCCCGTGAACGA
CTTGCAGTCCACCCCCTTGCACTACGCC
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