mRNA_H-elongata_contig196119.5464.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196119.5464.1
Unique NamemRNA_H-elongata_contig196119.5464.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.690e-23
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAIVACSIVHNMRPKL 189
            P +VK+A+L WP L+ +S+RG HAVA+WLQGGLGLSADDV KM++++PAIVACSIVHN+RPKL
Sbjct:  345 PEEVKDAVLRWPALMSLSKRGPHAVASWLQGGLGLSADDVGKMIRKHPAIVACSIVHNLRPKL 407
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BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-22
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAIVACSIVHNMRPKL 189
            P +VK+A+L WP L+ +S+RG HAV +WLQGGLGLS DDV KM+++NPAIVACSIVHN+RPKL
Sbjct:  339 PEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRPKL 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R0_ECTSI8.690e-2371.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAG1_9PHAE1.030e-2269.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196119contigH-elongata_contig196119:259..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.8e-19
Seed eggNOG ortholog2880.D7G0R0
KEGG koko:K15031,ko:K15032
EggNOG free text desc.termination of mitochondrial transcription
EggNOG OGsKOG1267@1,KOG1267@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMitochodrial transcription termination factor
Ec32 orthologEc-20_001360.1
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.0672944-CDS-H-elongata_contig196119:258..4531622930112.0672944-CDS-H-elongata_contig196119:258..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196119 259..453 -
1691679285.092553-CDS-H-elongata_contig196119:258..4531691679285.092553-CDS-H-elongata_contig196119:258..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196119 259..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196119.5464.1prot_H-elongata_contig196119.5464.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196119 259..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196119.5464.1

>prot_H-elongata_contig196119.5464.1 ID=prot_H-elongata_contig196119.5464.1|Name=mRNA_H-elongata_contig196119.5464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAI
VACSIVHNMRPKLG*
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mRNA from alignment at H-elongata_contig196119:259..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196119.5464.1 ID=mRNA_H-elongata_contig196119.5464.1|Name=mRNA_H-elongata_contig196119.5464.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig196119:259..453- (Himanthalia elongata Himel1 dioecious)
CCATTCAAGGTTAAGGAGGCCTTGCTGTGGTGGCCACCGCTGCTGGTGAT
GTCTGAGCGCGGAGCGCACGCGGTAGCGGCGTGGCTGCAGGGGGGCCTGG
GGCTTAGCGCCGATGACGTGTGCAAGATGGTGAAGCGGAACCCCGCCATC
GTGGCGTGTAGCATCGTCCACAACATGAGGCCGAAGCTTGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig196119:259..453-

>mRNA_H-elongata_contig196119.5464.1 ID=mRNA_H-elongata_contig196119.5464.1|Name=mRNA_H-elongata_contig196119.5464.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig196119:259..453- (Himanthalia elongata Himel1 dioecious)
CCATTCAAGGTTAAGGAGGCCTTGCTGTGGTGGCCACCGCTGCTGGTGAT
GTCTGAGCGCGGAGCGCACGCGGTAGCGGCGTGGCTGCAGGGGGGCCTGG
GGCTTAGCGCCGATGACGTGTGCAAGATGGTGAAGCGGAACCCCGCCATC
GTGGCGTGTAGCATCGTCCACAACATGAGGCCGAAGCTTGGGTAACCATT
CAAGGTTAAGGAGGCCTTGCTGTGGTGGCCACCGCTGCTGGTGATGTCTG
AGCGCGGAGCGCACGCGGTAGCGGCGTGGCTGCAGGGGGGCCTGGGGCTT
AGCGCCGATGACGTGTGCAAGATGGTGAAGCGGAACCCCGCCATCGTGGC
GTGTAGCATCGTCCACAACATGAGGCCGAAGCTTGGGTAA
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