prot_H-elongata_contig196119.5464.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig196119.5464.1
Unique Nameprot_H-elongata_contig196119.5464.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length65
Homology
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BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Match: D7G0R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R0_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 8.690e-23
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 0 
Query:    1 PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAIVACSIVHNMRPKL 63
            P +VK+A+L WP L+ +S+RG HAVA+WLQGGLGLSADDV KM++++PAIVACSIVHN+RPKL
Sbjct:  345 PEEVKDAVLRWPALMSLSKRGPHAVASWLQGGLGLSADDVGKMIRKHPAIVACSIVHNLRPKL 407
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BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Match: A0A6H5JAG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG1_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.030e-22
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 0 
Query:    1 PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAIVACSIVHNMRPKL 63
            P +VK+A+L WP L+ +S+RG HAV +WLQGGLGLS DDV KM+++NPAIVACSIVHN+RPKL
Sbjct:  339 PEEVKDAVLRWPALMSLSKRGPHAVTSWLQGGLGLSTDDVGKMIRKNPAIVACSIVHNLRPKL 401
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196119.5464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0R0_ECTSI8.690e-2371.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JAG1_9PHAE1.030e-2269.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 12..63
e-value: 2.8E-5
score: 23.2
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 2..64
e-value: 1.6E-5
score: 26.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196119contigH-elongata_contig196119:259..453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196119.5464.1mRNA_H-elongata_contig196119.5464.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig196119 259..453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig196119.5464.1 ID=prot_H-elongata_contig196119.5464.1|Name=mRNA_H-elongata_contig196119.5464.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
PFKVKEALLWWPPLLVMSERGAHAVAAWLQGGLGLSADDVCKMVKRNPAI
VACSIVHNMRPKLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf