mRNA_H-elongata_contig19531.5444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19531.5444.1
Unique NamemRNA_H-elongata_contig19531.5444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 1.180e-91
Identity = 262/542 (48.34%), Postives = 295/542 (54.43%), Query Frame = 1
Query:    1 GAVGATGLKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGK---GVETVGKGKTNRGEGLRGNQGD--------------GPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETR-----------------------RSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKP----------RTAMERYEWEFMPGLVRMFLSTVEGY-GETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
            GA  A   KRKRTGGL++++EI+EDE+MAVAN+NWA    P + A A   KG FKPKLVS IYRKE+RSCMP PGARAGPESSSRLQLLE S +LENYLWPNFD + S+TEHLMS ILLINSKFHEGVSVWE+LGISEGRLGNLPV   A   +  +P                           +           E   G A G        GK     ET  +G     +                      G DAM+                                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          R GWEGLS++ERIAYVTFLVNVF SLEEPVVRSNVLRL YLPLW +LQP R ALEL+ FPQLKRHW HLK G+ +  +           R+ MERYE+EF+P L RMFL  VE + G                               + PPRKLL+FCERFMEF+IDLLCQLPTR
Sbjct:  305 GAAAAGERKRKRTGGLVTITEINEDELMAVANQNWA----PGSKAAA---KGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDAKKSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPVTADAS--SSSKPXXXXXXXXXX-------------XXXXDAXXXXXXXAVAERAEGSAKGXXXXXKGGGKDTAAAETSVEGGEKEQDXXXXXXXXXXXXXXXXXXXXXXGVDAMEXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGWEGLSMYERIAYVTFLVNVFHSLEEPVVRSNVLRLAYLPLWASLQPGRLALELRPFPQLKRHWQHLKAGLAKEEEEGEGQGGAKSGRSGMERYEYEFLPSLARMFLDAVESFDGTVKGKKXXXXXXXXXXXXXXXXXXXXXXXAGRDPPRKLLEFCERFMEFLIDLLCQLPTR 824          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A7S3R311_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R311_DUNTE)

HSP 1 Score: 141 bits (356), Expect = 4.460e-32
Identity = 128/480 (26.67%), Postives = 175/480 (36.46%), Query Frame = 1
Query:   49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPRTAM---ERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKA--PPRKLLDFCERFMEFMIDLLCQLPTR 1473
            L++ EIH+D++   A + W+      T A++      F+P+LV++IYR E+       GAR  P S  R+ LLE+S +LENYLWPNFDP T+T EHLMS IL++N KF EGV  W      EG                                                     FA FF+  L L      +     +GV                                                                                                                  + +HER  Y+ F +NVFQSLE+ +VR+ VLRLV LPLW AL P R  LEL   PQL +HW HL     +++K    +   +R E  F+P L+  FL  ++       + +            G  G    ++G      PR LL  CER +E ++DLL QLPTR
Sbjct:   41 LTVKEIHQDKLTQTAQKQWS------TKAISSKAPPAFQPELVASIYRDELA------GARDEPPSLKRVMLLEVSQFLENYLWPNFDPATATFEHLMSIILMVNEKFREGVPAWTCFHTREGL----------------------------------------------------FADFFKCFLTL------KARREEQGV-----------------------------------------------------------------------------------------------------------------AMRMHERTTYLVFTINVFQSLEDEMVRAQVLRLVSLPLWQALSPGRLQLELHGLPQLGKHWKHLLKKEQKASKQPGYVPGPQRPEGRFVPALLDEFLEVLDQVVVPAEVPAAE----------GEGGEAMQTEGGPLVLSPRPLLH-CERLLELLVDLLSQLPTR 326          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA)

HSP 1 Score: 136 bits (342), Expect = 8.380e-32
Identity = 107/366 (29.23%), Postives = 136/366 (37.16%), Query Frame = 1
Query:   88 VANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL 1185
            +A++NWA G  P  A      K    P LV+ IY++E+ SC P PG RA   ++ RLQLLE++ YLENYLWP+F    S+  H+MS +L+ N KF  G S W+A+G+ EG  G                                              GG +F  FF  +  L  G W R  +                                       +G  P+                                                                          LS HER A   FL+NVFQSLE+P+VR   LRL  LPLW AL P R ALELKA+PQL+RHWLHL
Sbjct:    1 LAHQNWAAGA-PENAC-----KNTISPSLVTKIYKEELHSCGPGPGRRAAANANRRLQLLEVTSYLENYLWPHFHATKSSLPHVMSIVLMANEKFARGFSFWDAVGV-EGAGGG--------------------------------------------KGGEKFTAFFARIQDLLTGAWTRFDKKQAAXXXXXX-----------------------------AGAAPK--------------------------------------------------------------------------LSYHERAALTLFLINVFQSLEQPLVRGAALRLCSLPLWAALSPGRLALELKAYPQLRRHWLHL 212          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A8J4B3V0_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4B3V0_9CHLO)

HSP 1 Score: 131 bits (329), Expect = 1.330e-28
Identity = 135/495 (27.27%), Postives = 177/495 (35.76%), Query Frame = 1
Query:   31 KRTGGLLSLSEIHEDEVMAVANENW---ARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL-----------KMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
            K+ G LL+++EI  D++  +A +NW   AR  +P  A         FKPKLVS+IYR+E+       GA     S  R+ LLE+S YLENYLWPNFDPET+T EH+MS +L++N KF E V  W      E                                                      F  FF+           RVL   +G E                                                                                                               E L LHER AYV F++  FQSLE+ +VR+ VLR+V LPLW AL P R  LEL A   L +HW              K GV+  +      +R E  F+P L+  FL+ ++            K V+           G   K ++A     L +CERF+EF+IDLL QLPTR
Sbjct:   77 KQPGSLLTVAEIVTDKLTRIARKNWSNAARARDPPPA---------FKPKLVSSIYREELG------GASMRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENVPAWTCFHTREDA----------------------------------------------------FPGFFK-----------RVLSVKEGQE---------------------------------------------------------------------------------------------------------------EKLRLHERTAYVLFMIRSFQSLEDEMVRAQVLRVVSLPLWHALSPGRLHLELHAHEALAKHWKAAAKKEAKAAKKSKPGVDGESAYVPVAQRPEVRFLPSLLDEFLTVLD------------KVVIP------PTDPGCFPKLNRAA----LQYCERFLEFLIDLLSQLPTR 360          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: D8TS23_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TS23_VOLCA)

HSP 1 Score: 130 bits (327), Expect = 2.390e-28
Identity = 135/501 (26.95%), Postives = 174/501 (34.73%), Query Frame = 1
Query:   22 LKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEG-LSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHW----------------LHLKMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
            L  K+ G LL+++EI  D++  +A  NW+   N   A    PT   FKPKLVS+IYR E+       GA     S  R+ LLE+S YLENYLWPNFDPET+T EH+MS +L++N KF E +  W      E                                                      F  FF+ VL L                                                                                                                           + G EG L +HER AYV F++  FQSLE+ +VR+ VLR+V LPLW AL P R  LEL A   L +HW                     G   S       +R E  F+P L+  FLS ++            K V+           G  +K D+A     L +CERF+EF+IDLL QLPTR
Sbjct:  103 LPTKQAGSLLTVAEIVTDKLTKLAQRNWS---NAARARHPPPT---FKPKLVSSIYRDELG------GAGTRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENIPAWACFHTREDA----------------------------------------------------FPGFFKRVLSL---------------------------------------------------------------------------------------------------------------------------KEGREGKLRMHERTAYVLFMIRSFQSLEDEMVRAQVLRVVSLPLWHALSPGRLQLELHAHEALAKHWKAAAKXXXXXXXXXXXXXXXAGEGASAAYVPVAQRPEVRFLPSLLDEFLSVLD------------KVVIP------PTDPGCFAKLDRAG----LQYCERFLEFLIDLLSQLPTR 394          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A2P6TX82_CHLSO (Intron-binding aquarius n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TX82_CHLSO)

HSP 1 Score: 105 bits (262), Expect = 3.700e-20
Identity = 67/167 (40.12%), Postives = 87/167 (52.10%), Query Frame = 1
Query:  997 LSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPR---TAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLD-----FCERFMEFMIDLLCQLPTR 1473
            + +HER+AY+ F +N FQSLE+  VR+ VLRLV LPLW AL   R  LEL   PQL +HW HL     ++ K        +R E  F+PGL+  FL  ++G             +V       A    E  +   A P   LD     +CERF+EF+ DLL QLPTR
Sbjct:  390 MRMHERVAYIVFAINAFQSLEDEAVRAQVLRLVSLPLWHALSRGRLQLELHDQPQLAKHWKHLAKREAKAAKAEGYVPVQQRPEAAFLPGLLSEFLEVLQG-------------IVP------APMDAEGGEAAAAEPAGQLDKQALLYCERFVEFLTDLLSQLPTR 537          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A498KD47_MALDO (Aquarius_N domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498KD47_MALDO)

HSP 1 Score: 97.1 bits (240), Expect = 6.270e-20
Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query:   49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVW 393
            ++L +I  D +  +A +NW++ ++      A   K  F P+LV+ IYR E+   +     RA P  S R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct:   38 ITLLDIQRDRLTMIAADNWSKTLD------ASQPKKPFDPELVNEIYRTELS--VGEGQRRAVP--SQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILIVNEKFRENVAAW 142          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A1Y1HSV8_KLENI (Intron-binding protein aquarius n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSV8_KLENI)

HSP 1 Score: 104 bits (259), Expect = 8.400e-20
Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 1
Query:  979 RSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL-KMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLD-----FCERFMEFMIDLLCQLPTR 1473
            + G   +++ ER  Y+ FL+N FQSLE+ +V+  VL+LV LPLW AL P RR  + K++ ++   W  L +     + K    + + E +FMPG++  FL T+E    T    +D    +T  G    A   + ++G++AP    +D     +CERF+EF+IDLL QLPTR
Sbjct:  164 KEGERQMTIQERTNYLLFLINCFQSLEDEMVQRPVLKLVSLPLWHALSPGRRQAQFKSYEKMGELWDRLQRREAKEAKKGGDPLSKPEVQFMPGMLHEFLQTLETVISTAEAKTDGDEPMTEAG----AAIVDGAEGEEAPIAGQVDTSKLLYCERFVEFLIDLLSQLPTR 330          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A7J6G1K1_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6G1K1_CANSA)

HSP 1 Score: 103 bits (258), Expect = 1.140e-19
Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1
Query:   49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVW 393
            ++LSEI +D +  +A ENW++      A  A  +K  FKP+LV  IY  E+     +   +  P    R+ +LE+S YLENYLWPNFDPET+T EH+MS I++IN KF E V+ W
Sbjct:   46 ITLSEIQQDRLTQLAMENWSK------AGEAAKSKKPFKPELVKEIYETELL----VKEGQRKPVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMIIMINEKFRENVAAW 150          
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A2P6V3R4_9CHLO (Intron-binding aquarius n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3R4_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.160e-19
Identity = 68/167 (40.72%), Postives = 90/167 (53.89%), Query Frame = 1
Query:  991 EGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPRTAME---RYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPP---RKLLDFCERFMEFMIDLLCQLPTR 1473
            E + +HER+A++ F +N FQSLE+  VR+ VLRLV LPLW AL   R  LEL   PQL +HW HL     ++      +    R E  F+PGL+  FL+ V+G             VV +G            +GD AP    R+ L +CERF+E + DLL QLPTR
Sbjct:  366 ERMRMHERVAFLVFWINAFQSLEDEAVRAQVLRLVSLPLWHALSRGRLQLELHDQPQLAKHWRHLAKREAKAAAQEGHVPVALRPEAAFLPGLLDEFLAVVQG-------------VVPAG--------AMEEEGDAAPKPLDRQALLYCERFVELLTDLLSQLPTR 511          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMQ9_ECTSI1.180e-9148.34Aquarius intron-binding protein similar to aquariu... [more]
A0A7S3R311_DUNTE4.460e-3226.67Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A835YQ44_9STRA8.380e-3229.23Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A8J4B3V0_9CHLO1.330e-2827.27Uncharacterized protein n=2 Tax=Volvox TaxID=3066 ... [more]
D8TS23_VOLCA2.390e-2826.95Uncharacterized protein n=1 Tax=Volvox carteri f. ... [more]
A0A2P6TX82_CHLSO3.700e-2040.12Intron-binding aquarius n=1 Tax=Chlorella sorokini... [more]
A0A498KD47_MALDO6.270e-2044.35Aquarius_N domain-containing protein n=1 Tax=Malus... [more]
A0A1Y1HSV8_KLENI8.400e-2036.84Intron-binding protein aquarius n=1 Tax=Klebsormid... [more]
A0A7J6G1K1_CANSA1.140e-1945.22Uncharacterized protein n=4 Tax=Cannabis sativa Ta... [more]
A0A2P6V3R4_9CHLO1.160e-1940.72Intron-binding aquarius n=1 Tax=Micractinium condu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19531contigH-elongata_contig19531:202..4843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score319.7
Seed ortholog evalue2.4e-84
Seed eggNOG ortholog2880.D7FMQ9
KEGG koko:K12874
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0071014,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG1806@1,KOG1806@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons6
Model size1482
Cds size1482
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19531.5444.1prot_H-elongata_contig19531.5444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19531 202..4843 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930110.0594797-CDS-H-elongata_contig19531:201..3661622930110.0594797-CDS-H-elongata_contig19531:201..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 202..366 -
1691679284.2161477-CDS-H-elongata_contig19531:201..3661691679284.2161477-CDS-H-elongata_contig19531:201..366Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 202..366 -
1622930110.0738623-CDS-H-elongata_contig19531:1385..15141622930110.0738623-CDS-H-elongata_contig19531:1385..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 1386..1514 -
1691679284.2269375-CDS-H-elongata_contig19531:1385..15141691679284.2269375-CDS-H-elongata_contig19531:1385..1514Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 1386..1514 -
1622930110.0929298-CDS-H-elongata_contig19531:1909..20471622930110.0929298-CDS-H-elongata_contig19531:1909..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 1910..2047 -
1691679284.2348652-CDS-H-elongata_contig19531:1909..20471691679284.2348652-CDS-H-elongata_contig19531:1909..2047Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 1910..2047 -
1622930110.1129699-CDS-H-elongata_contig19531:2701..34031622930110.1129699-CDS-H-elongata_contig19531:2701..3403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 2702..3403 -
1691679284.242731-CDS-H-elongata_contig19531:2701..34031691679284.242731-CDS-H-elongata_contig19531:2701..3403Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 2702..3403 -
1622930110.1280913-CDS-H-elongata_contig19531:4067..42411622930110.1280913-CDS-H-elongata_contig19531:4067..4241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 4068..4241 -
1691679284.2504082-CDS-H-elongata_contig19531:4067..42411691679284.2504082-CDS-H-elongata_contig19531:4067..4241Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 4068..4241 -
1622930110.145661-CDS-H-elongata_contig19531:4669..48431622930110.145661-CDS-H-elongata_contig19531:4669..4843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 4670..4843 -
1691679284.2655365-CDS-H-elongata_contig19531:4669..48431691679284.2655365-CDS-H-elongata_contig19531:4669..4843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19531 4670..4843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19531.5444.1

>prot_H-elongata_contig19531.5444.1 ID=prot_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=494bp
GAVGATGLKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPT
KGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLW
PNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPA
KDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESV
LGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDC
ADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDERPPAKSSHTAAGA
GGERSGPRRGSPAGSGGGGKKRRETRRSGWEGLSLHERIAYVTFLVNVFQ
SLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVN
RSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGG
SGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTRFD*
back to top

mRNA from alignment at H-elongata_contig19531:202..4843-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19531.5444.1 ID=mRNA_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4642bp|location=Sequence derived from alignment at H-elongata_contig19531:202..4843- (Himanthalia elongata Himel1 dioecious)
GGAGCCGTGGGAGCGACCGGGTTGAAACGAAAGCGGACGGGTGGGCTGTT GAGCCTGAGCGAGATTCACGAAGACGAGGTGATGGCGGTGGCGAACGAAA ACTGGGCGCGTGGTATGAACCCCACGACCGCCGCGGTTGCCGTTCCAACA AAGGGAAAGTTCAAGCCTAAACTTGTTAGCCTATCGGAGCGGTAAAATTA GTCTGGGAGCTGCTCCGTCGCTTGTGTCAGTGTCCCGCTCGAGATGCCTC TCAGATACATGCTGTCTGTATTTGCATGTTTCTACCACGGGAAGGCGTCT CTCCTCGAACGCCGCGCGTACCCGTTCCGACCCCCCAGAAAGTTTTTTGT CCGATTTTTGTTTACTCTTTTCGCTTAACCCTTTTGGAACTGAATTTCAA GTTTGTATTGAATTTAGACTAGAAAAAAACAGATCCAGTTCCTTAGGGGT TAAGTTCTCAATCGGGCGTCGGGTTATCGAACCGCCTATGTTGGTCCTTC AAACCCTGGCTATCATGCGCGAGGTCCACAAACTCGCGCTCCCCTCATCT GACGGTTGATGCCCCCGCCACCCCCCCAACACCCTACCTTATTTCCATGA AGGTCTCCGCTATATACCGAAAAGAGATGAGGTCCTGCATGCCGATTCCA GGCGCTCGAGCGGGGCCCGAGTCCAGCTCACGCCTCCAGCTCTTGGAGAT CAGCGGGTACCTGGAGAACTACCTCTGGCCCAACTTTGACCCGGAGACGT CGACCACGGAGCACCTCATGAGCGCGGTAAGGATCACCACGACCGCGCGT CCTCTGGCTTTTGGTATGGAGGGTGGGGATTTTTTGTCAGGGTGATCTTG CTGAGTGGGTCCGCAGCGAACTTTTTATCAATTCATCGCTCTTGGTGGAA TAATTCCAAATACGCTACAGTGGTATAAGAAAGGTGGTGTGGGTCTTCTC GATAACTTTATTTTTCGTGGTAGTGGTGGTGATAATTTGAAATAATCTAC CGCCCTCTCCGCGAACGATCTCCTGCCGTGGCCGTCGAAGGGCGTCGACT CTCAAGTCTACCGGCGCCTGCGCGGGTGTGATGTCATCGTCTCTGCGCCG TGTCTTACCGATATCGTTTTAGGATCACCCCTCGCGAGTCTTCGAGAGAG AACAATCCAGCAGCCTCCGCCATTGGTGAAATCGTTTCGCCCTCCCTCCC ATGCCGCGCCTGGGAACTATGCTTACGCGCGTGTGTAGTTGCCGTAGCCA ACGCGGTTCGTCCGTCTCGTCTGACCAAATCCGCTGTCCGCCGCACACAA CTCCGCATGTTTCGCACTCGACGAATTGATCGATCACGTGCGTTGGAATC TCTCGTTTTTGGCGAGAACCAAACGCCATCTTAGTGTCTACTTTCGATGC ACACACCTTTCTCCTCGTTCTCTCTCTACCCCCCCCCCAGATCCTTCTCA TCAACTCCAAGTTCCACGAAGGCGTGAGTGTGTGGGAAGCGCTCGGCATC TCGGAGGGCCGCCTGGGCAACTTACCGGTGCTTGTACCGGCCAAGGACTG GAACGGGGACCGTCCGGCGGCAACGGCAGCCGTCTCCTCGACCAATGGCG ACGGCGACAGCGGCTGCAAGGAAAGCGGCGACGCGAACTCGCCCGCTGAA GTAGCGGGGGGGCGCCGCTTCGCGACGTTCTTTGAGAGCGTCCTGGGGCT CGCGATGGGGGACTGGCCAAGGGTCCTTGAGCCTGGCAAGGGCGTCGAAA CAGTGGGTAAAGGTAAAACCAATAGAGGTGAAGGGTTGAGGGGAAACCAG GGCGACGGCCCAGATGCTATGGACGAAGATGAAGAAGATTGCGCGGATAG TGGAACCCCTCCCCGAGGTGATCGCGGTGGGGAAGTCGGGGCCGATGTCA ACGAGGTCGACGCGCGGGACGATGGTGGTGGAAACCGGCTCGAGAGTGAC GAACGTCCTCCCGCCAAGTCTTCGCACACGGCCGCGGGGGCCGGCGGGGA AAGGAGCGGGCCGCGCCGAGGATCTCCAGCGGGATCTGGTGGAGGGGGGA AAAAACGGCGAGAGACGCGGCGTTCCGGGTGGGAAGGACTGTCTCTGCAC GAGCGCATCGCGTACGTGACGTTCTTGGTGAACGTATTCCAGGTCAACTC TTTTCCTAACATTTGTGGACGCTTTCTCCGTGTTTCGAGGCGGGGGGATC AAGTGGGGAGATTATTGGGTCTCTTTTCCACCGCGGTGTTCGTCAATGAC TTCCCTTTCTATTACCCTCCCCCCCTGCCATATACACGCCTACCCGGATT TTCTTCACAGCAGCGACGACACAACCAAAATATATTAAAGTGGGTTTTGT AGAGATATACAAGTAAAGTTCTCACCAAGTTTCTCTTCCGCGCCAACGCC CTGTGTTGCGGAGAATATCATAGGGATGTTCTCCACAGCATCATGATAGG GTTTGAGGTGTGGGAATGAAGATTTTTGGTCTGGGCTTGCAGCTCTGTGA CCTTTCTCGTTGACCCCCCCCCCCCAACGTATTTGGCGGGTCCAGAGATA AGTTCTCTTTTTTTCAATCACCGACACGCTGAAACCGTCGACAACAAGGG GAGAGCATTAATAGCGTTATTATCTCTTCTATCTACATTTCTATATGCAC ATTATATAAACGTTGCCCCCCTCCTCTCTCTATCTCCCTTTATTTGCCAC GTAATCAAACCTAAACCTTAACGCCCCTCGCTCCCTATTACACCCTCTCC CCGTGTGCCCGAATGTTGCCGTACTTACTGTGTGTGGGGGGAGAAGTCTC TCGAGGAACCCGTGGTCCGCAGCAACGTTCTCCGCCTAGTGTATCTCCCG CTCTGGGGCGCGCTGCAGCCCGTTCGGCGCGCGCTCGAGCTGAAGGCGTT TCCTCAGCTAAAGCGTCACTGGTTGCACTTGAAGGTACGTGACAGCTGCT GCTGCTCGGCGGTGGCGGCGACCGCGGCAGGGCGTAGACACGGTGATGAT AATCACACTTCGTCGCGGTGATGCAGTGTGAGTAAAGCTTTGATGCTGCC ATCCTCTGCACTGTGGCGTCATAAACCTTAAATACCTCACATACCTTACC TTACCGGTGCTTGTACAGTACAGTACAGCTTGTGTCGTGTTGTGTCGTGT TGTGTCGTCATATTATTGCATACTGCACTTCACGATTTTAGTTTTTCTGT TTTTGGTGAGCCATGCCATGCGAGTGCCGTACGAGCGCGATATGTTTTTT TTTTTGAAATATTTTATTATATTAAGTTTTTTATTTATTTGTATTTATTT GTATTATTATTATTATTTTCTTGTTCCAGATGGGCGTGAATCGTTCGACA AAGCCGAGGACTGCCATGGAGCGCTACGAGTGGGAGTTTATGCCCGGGCT GGTGAGGATGTTTCTCTCCACCGTTGAAGGCTACGGTGAGACATGCTCGC TTGCAAGCGTCCGCAAGAAGCACGCCCGCAGGCTTTCCCGCGGTGATTTC GATGTCAAGGTCACCACTAGAGAACCGAGGCGTTTGGGGGGTGGGTAGAA CGTGACACAACGCTCGGCTCTACCGCCTCCGCCATCATGAGCTAATATAA CGTTTGCTTTTTCTCCCGTCGCTTTTTCCGAGCGAATGCCCTTCGCCTTT CGCTCAGTTCCAGGTGTCTACCTAGCTAGGTTCTTGCCTTGATTCTTCCG ACGTGCTGGGTGCAGCACTCCCACCACGCCTCGACTTCTCATTTGTTGTT GTAGTTACATAATAGAATAGTAATACTAATAATAGAATAGTAATACTAAT AATAGAATAGTAATACTAATAATAGAATAGTAATACTAATAATAATATAC ACACGTTAGTGACGACTGAGGGCTGAGGGCTGCACTTCATTCGTCCAGAG CCTGGACGAGATCAACTCGTGCTCCCTCCGGATGGCCGTCACCACGCATG ACTTCATCTTGGAGAAATATACTGAATGAAGTGGGATTAAGTAAAACAGT CATGTTAATGGGTCTTGCCTCATGCGTCTTATTTTAACTCTCCGAACATC CACGCCTTCTTAGCACCGTGAGAATCGTCACATTCCTGTCATGATGCCCT GAGAAGCCGATACATTCCCAACCCTACATGTGGTACGCTGGACAGGGGCT GAAAACAATACTGTAAAGGAGAAAAAAACACGCTGAAAATCGTCAAGTAT ACCACTAATAACTTCCAAAATGCACTTTTTTTGGCGTGGTTACACCATTC GTGAGCAGACTGGGCTAAAAAAAACAAAACAACCCCTGCGCTACACCTAC CTCTCTTGGTGCTAAGGAGGCGTGATGGATGTTCGGGGGGTTGGAATTAG TTTATTTGGTTTTTCAAGAAAAATAATGTAGACAGTAGCACACATATATA TATTATGTATATATATTATATATATATTTGTGTGTACGTGTCTTTTTATC TGTTTTTTTTCAGATACCAACGCGGAGGATCGGAAAGGAGTTGTTACGTC TGGAGGCGGTAGTGGTGCCGCGGGGACAGGGGAGAACTCGAAGGGGGACA AGGCGCCCCCCCGCAAGCTACTGGACTTCTGCGAGAGGTTCATGGAATTT ATGATCGACCTCCTCTGCCAGCTTCCCACAAGGTTCGATTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19531:202..4843-

>mRNA_H-elongata_contig19531.5444.1 ID=mRNA_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2964bp|location=Sequence derived from alignment at H-elongata_contig19531:202..4843- (Himanthalia elongata Himel1 dioecious)
GGAGCCGTGGGAGCGACCGGGTTGAAACGAAAGCGGACGGGTGGGCTGTT
GAGCCTGAGCGAGATTCACGAAGACGAGGTGATGGCGGTGGCGAACGAAA
ACTGGGCGCGTGGTATGAACCCCACGACCGCCGCGGTTGCCGTTCCAACA
AAGGGAAAGTTCAAGCCTAAACTTGGAGCCGTGGGAGCGACCGGGTTGAA
ACGAAAGCGGACGGGTGGGCTGTTGAGCCTGAGCGAGATTCACGAAGACG
AGGTGATGGCGGTGGCGAACGAAAACTGGGCGCGTGGTATGAACCCCACG
ACCGCCGCGGTTGCCGTTCCAACAAAGGGAAAGTTCAAGCCTAAACTTGT
CTCCGCTATATACCGAAAAGAGATGAGGTCCTGCATGCCGATTCCAGGCG
CTCGAGCGGGGCCCGAGTCCAGCTCACGCCTCCAGCTCTTGGAGATCAGC
GGGTACCTGGAGAACTACCTCTGGCCCAACTTTGACCCGGAGACGTCGAC
CACGGAGCACCTCATGAGCGCGGTCTCCGCTATATACCGAAAAGAGATGA
GGTCCTGCATGCCGATTCCAGGCGCTCGAGCGGGGCCCGAGTCCAGCTCA
CGCCTCCAGCTCTTGGAGATCAGCGGGTACCTGGAGAACTACCTCTGGCC
CAACTTTGACCCGGAGACGTCGACCACGGAGCACCTCATGAGCGCGATCC
TTCTCATCAACTCCAAGTTCCACGAAGGCGTGAGTGTGTGGGAAGCGCTC
GGCATCTCGGAGGGCCGCCTGGGCAACTTACCGGTGCTTGTACCGGCCAA
GGACTGGAACGGGGACCGTCCGGCGGCAACGGCAGCCGTCTCCTCGACCA
ATGGCGACGGCGACAGCGGCTGCAAGGAAAGCGGCGACGCGAACTCGCCC
GCTGAAGTAGCGGGGGGGCGCCGCTTCGCGACGTTCTTTGAGAGCGTCCT
GGGGCTCGCGATGGGGGACTGGCCAAGGGTCCTTGAGCCTGGCAAGGGCG
TCGAAACAGTGGGTAAAGGTAAAACCAATAGAGGTGAAGGGTTGAGGGGA
AACCAGGGCGACGGCCCAGATGCTATGGACGAAGATGAAGAAGATTGCGC
GGATAGTGGAACCCCTCCCCGAGGTGATCGCGGTGGGGAAGTCGGGGCCG
ATGTCAACGAGGTCGACGCGCGGGACGATGGTGGTGGAAACCGGCTCGAG
AGTGACGAACGTCCTCCCGCCAAGTCTTCGCACACGGCCGCGGGGGCCGG
CGGGGAAAGGAGCGGGCCGCGCCGAGGATCTCCAGCGGGATCTGGTGGAG
GGGGGAAAAAACGGCGAGAGACGCGGCGTTCCGGGTGGGAAGGACTGTCT
CTGCACGAGCGCATCGCGTACGTGACGTTCTTGGTGAACGTATTCCAGAT
CCTTCTCATCAACTCCAAGTTCCACGAAGGCGTGAGTGTGTGGGAAGCGC
TCGGCATCTCGGAGGGCCGCCTGGGCAACTTACCGGTGCTTGTACCGGCC
AAGGACTGGAACGGGGACCGTCCGGCGGCAACGGCAGCCGTCTCCTCGAC
CAATGGCGACGGCGACAGCGGCTGCAAGGAAAGCGGCGACGCGAACTCGC
CCGCTGAAGTAGCGGGGGGGCGCCGCTTCGCGACGTTCTTTGAGAGCGTC
CTGGGGCTCGCGATGGGGGACTGGCCAAGGGTCCTTGAGCCTGGCAAGGG
CGTCGAAACAGTGGGTAAAGGTAAAACCAATAGAGGTGAAGGGTTGAGGG
GAAACCAGGGCGACGGCCCAGATGCTATGGACGAAGATGAAGAAGATTGC
GCGGATAGTGGAACCCCTCCCCGAGGTGATCGCGGTGGGGAAGTCGGGGC
CGATGTCAACGAGGTCGACGCGCGGGACGATGGTGGTGGAAACCGGCTCG
AGAGTGACGAACGTCCTCCCGCCAAGTCTTCGCACACGGCCGCGGGGGCC
GGCGGGGAAAGGAGCGGGCCGCGCCGAGGATCTCCAGCGGGATCTGGTGG
AGGGGGGAAAAAACGGCGAGAGACGCGGCGTTCCGGGTGGGAAGGACTGT
CTCTGCACGAGCGCATCGCGTACGTGACGTTCTTGGTGAACGTATTCCAG
TCTCTCGAGGAACCCGTGGTCCGCAGCAACGTTCTCCGCCTAGTGTATCT
CCCGCTCTGGGGCGCGCTGCAGCCCGTTCGGCGCGCGCTCGAGCTGAAGG
CGTTTCCTCAGCTAAAGCGTCACTGGTTGCACTTGAAGTCTCTCGAGGAA
CCCGTGGTCCGCAGCAACGTTCTCCGCCTAGTGTATCTCCCGCTCTGGGG
CGCGCTGCAGCCCGTTCGGCGCGCGCTCGAGCTGAAGGCGTTTCCTCAGC
TAAAGCGTCACTGGTTGCACTTGAAGATGGGCGTGAATCGTTCGACAAAG
CCGAGGACTGCCATGGAGCGCTACGAGTGGGAGTTTATGCCCGGGCTGGT
GAGGATGTTTCTCTCCACCGTTGAAGGCTACGGTGAGACATGCTCGCTTG
CAAGCATGGGCGTGAATCGTTCGACAAAGCCGAGGACTGCCATGGAGCGC
TACGAGTGGGAGTTTATGCCCGGGCTGGTGAGGATGTTTCTCTCCACCGT
TGAAGGCTACGGTGAGACATGCTCGCTTGCAAGCGATCGGAAAGGAGTTG
TTACGTCTGGAGGCGGTAGTGGTGCCGCGGGGACAGGGGAGAACTCGAAG
GGGGACAAGGCGCCCCCCCGCAAGCTACTGGACTTCTGCGAGAGGTTCAT
GGAATTTATGATCGACCTCCTCTGCCAGCTTCCCACAAGGTTCGATTAAG
ATCGGAAAGGAGTTGTTACGTCTGGAGGCGGTAGTGGTGCCGCGGGGACA
GGGGAGAACTCGAAGGGGGACAAGGCGCCCCCCCGCAAGCTACTGGACTT
CTGCGAGAGGTTCATGGAATTTATGATCGACCTCCTCTGCCAGCTTCCCA
CAAGGTTCGATTAA
back to top