mRNA_H-elongata_contig19531.5444.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: D7FMQ9_ECTSI (Aquarius intron-binding protein similar to aquarius n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMQ9_ECTSI) HSP 1 Score: 316 bits (809), Expect = 1.180e-91 Identity = 262/542 (48.34%), Postives = 295/542 (54.43%), Query Frame = 1
Query: 1 GAVGATGLKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGK---GVETVGKGKTNRGEGLRGNQGD--------------GPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETR-----------------------RSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKP----------RTAMERYEWEFMPGLVRMFLSTVEGY-GETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
GA A KRKRTGGL++++EI+EDE+MAVAN+NWA P + A A KG FKPKLVS IYRKE+RSCMP PGARAGPESSSRLQLLE S +LENYLWPNFD + S+TEHLMS ILLINSKFHEGVSVWE+LGISEGRLGNLPV A + +P + E G A G GK ET +G + G DAM+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R GWEGLS++ERIAYVTFLVNVF SLEEPVVRSNVLRL YLPLW +LQP R ALEL+ FPQLKRHW HLK G+ + + R+ MERYE+EF+P L RMFL VE + G + PPRKLL+FCERFMEF+IDLLCQLPTR
Sbjct: 305 GAAAAGERKRKRTGGLVTITEINEDELMAVANQNWA----PGSKAAA---KGSFKPKLVSTIYRKELRSCMPTPGARAGPESSSRLQLLEFSAFLENYLWPNFDAKKSSTEHLMSTILLINSKFHEGVSVWESLGISEGRLGNLPVTADAS--SSSKPXXXXXXXXXX-------------XXXXDAXXXXXXXAVAERAEGSAKGXXXXXKGGGKDTAAAETSVEGGEKEQDXXXXXXXXXXXXXXXXXXXXXXGVDAMEXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGWEGLSMYERIAYVTFLVNVFHSLEEPVVRSNVLRLAYLPLWASLQPGRLALELRPFPQLKRHWQHLKAGLAKEEEEGEGQGGAKSGRSGMERYEYEFLPSLARMFLDAVESFDGTVKGKKXXXXXXXXXXXXXXXXXXXXXXXAGRDPPRKLLEFCERFMEFLIDLLCQLPTR 824
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A7S3R311_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R311_DUNTE) HSP 1 Score: 141 bits (356), Expect = 4.460e-32 Identity = 128/480 (26.67%), Postives = 175/480 (36.46%), Query Frame = 1
Query: 49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPRTAM---ERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKA--PPRKLLDFCERFMEFMIDLLCQLPTR 1473
L++ EIH+D++ A + W+ T A++ F+P+LV++IYR E+ GAR P S R+ LLE+S +LENYLWPNFDP T+T EHLMS IL++N KF EGV W EG FA FF+ L L + +GV + +HER Y+ F +NVFQSLE+ +VR+ VLRLV LPLW AL P R LEL PQL +HW HL +++K + +R E F+P L+ FL ++ + + G G ++G PR LL CER +E ++DLL QLPTR
Sbjct: 41 LTVKEIHQDKLTQTAQKQWS------TKAISSKAPPAFQPELVASIYRDELA------GARDEPPSLKRVMLLEVSQFLENYLWPNFDPATATFEHLMSIILMVNEKFREGVPAWTCFHTREGL----------------------------------------------------FADFFKCFLTL------KARREEQGV-----------------------------------------------------------------------------------------------------------------AMRMHERTTYLVFTINVFQSLEDEMVRAQVLRLVSLPLWQALSPGRLQLELHGLPQLGKHWKHLLKKEQKASKQPGYVPGPQRPEGRFVPALLDEFLEVLDQVVVPAEVPAAE----------GEGGEAMQTEGGPLVLSPRPLLH-CERLLELLVDLLSQLPTR 326
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A835YQ44_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ44_9STRA) HSP 1 Score: 136 bits (342), Expect = 8.380e-32 Identity = 107/366 (29.23%), Postives = 136/366 (37.16%), Query Frame = 1
Query: 88 VANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL 1185
+A++NWA G P A K P LV+ IY++E+ SC P PG RA ++ RLQLLE++ YLENYLWP+F S+ H+MS +L+ N KF G S W+A+G+ EG G GG +F FF + L G W R + +G P+ LS HER A FL+NVFQSLE+P+VR LRL LPLW AL P R ALELKA+PQL+RHWLHL
Sbjct: 1 LAHQNWAAGA-PENAC-----KNTISPSLVTKIYKEELHSCGPGPGRRAAANANRRLQLLEVTSYLENYLWPHFHATKSSLPHVMSIVLMANEKFARGFSFWDAVGV-EGAGGG--------------------------------------------KGGEKFTAFFARIQDLLTGAWTRFDKKQAAXXXXXX-----------------------------AGAAPK--------------------------------------------------------------------------LSYHERAALTLFLINVFQSLEQPLVRGAALRLCSLPLWAALSPGRLALELKAYPQLRRHWLHL 212
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A8J4B3V0_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4B3V0_9CHLO) HSP 1 Score: 131 bits (329), Expect = 1.330e-28 Identity = 135/495 (27.27%), Postives = 177/495 (35.76%), Query Frame = 1
Query: 31 KRTGGLLSLSEIHEDEVMAVANENW---ARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL-----------KMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
K+ G LL+++EI D++ +A +NW AR +P A FKPKLVS+IYR+E+ GA S R+ LLE+S YLENYLWPNFDPET+T EH+MS +L++N KF E V W E F FF+ RVL +G E E L LHER AYV F++ FQSLE+ +VR+ VLR+V LPLW AL P R LEL A L +HW K GV+ + +R E F+P L+ FL+ ++ K V+ G K ++A L +CERF+EF+IDLL QLPTR
Sbjct: 77 KQPGSLLTVAEIVTDKLTRIARKNWSNAARARDPPPA---------FKPKLVSSIYREELG------GASMRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENVPAWTCFHTREDA----------------------------------------------------FPGFFK-----------RVLSVKEGQE---------------------------------------------------------------------------------------------------------------EKLRLHERTAYVLFMIRSFQSLEDEMVRAQVLRVVSLPLWHALSPGRLHLELHAHEALAKHWKAAAKKEAKAAKKSKPGVDGESAYVPVAQRPEVRFLPSLLDEFLTVLD------------KVVIP------PTDPGCFPKLNRAA----LQYCERFLEFLIDLLSQLPTR 360
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: D8TS23_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TS23_VOLCA) HSP 1 Score: 130 bits (327), Expect = 2.390e-28 Identity = 135/501 (26.95%), Postives = 174/501 (34.73%), Query Frame = 1
Query: 22 LKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVWEALGISEGRLGNLPVLVPAKDWNGDRPAATAAVSSTNGDGDSGCKESGDANSPAEVAGGRRFATFFESVLGLAMGDWPRVLEPGKGVETVGKGKTNRGEGLRGNQGDGPDAMDEDEEDCADSGTPPRGDRGGEVGADVNEVDARDDGGGNRLESDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRRSGWEG-LSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHW----------------LHLKMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLDFCERFMEFMIDLLCQLPTR 1473
L K+ G LL+++EI D++ +A NW+ N A PT FKPKLVS+IYR E+ GA S R+ LLE+S YLENYLWPNFDPET+T EH+MS +L++N KF E + W E F FF+ VL L + G EG L +HER AYV F++ FQSLE+ +VR+ VLR+V LPLW AL P R LEL A L +HW G S +R E F+P L+ FLS ++ K V+ G +K D+A L +CERF+EF+IDLL QLPTR
Sbjct: 103 LPTKQAGSLLTVAEIVTDKLTKLAQRNWS---NAARARHPPPT---FKPKLVSSIYRDELG------GAGTRGPSFKRVMLLEVSQYLENYLWPNFDPETATFEHVMSIVLMVNEKFRENIPAWACFHTREDA----------------------------------------------------FPGFFKRVLSL---------------------------------------------------------------------------------------------------------------------------KEGREGKLRMHERTAYVLFMIRSFQSLEDEMVRAQVLRVVSLPLWHALSPGRLQLELHAHEALAKHWKAAAKXXXXXXXXXXXXXXXAGEGASAAYVPVAQRPEVRFLPSLLDEFLSVLD------------KVVIP------PTDPGCFAKLDRAG----LQYCERFLEFLIDLLSQLPTR 394
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A2P6TX82_CHLSO (Intron-binding aquarius n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TX82_CHLSO) HSP 1 Score: 105 bits (262), Expect = 3.700e-20 Identity = 67/167 (40.12%), Postives = 87/167 (52.10%), Query Frame = 1
Query: 997 LSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPR---TAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLD-----FCERFMEFMIDLLCQLPTR 1473
+ +HER+AY+ F +N FQSLE+ VR+ VLRLV LPLW AL R LEL PQL +HW HL ++ K +R E F+PGL+ FL ++G +V A E + A P LD +CERF+EF+ DLL QLPTR
Sbjct: 390 MRMHERVAYIVFAINAFQSLEDEAVRAQVLRLVSLPLWHALSRGRLQLELHDQPQLAKHWKHLAKREAKAAKAEGYVPVQQRPEAAFLPGLLSEFLEVLQG-------------IVP------APMDAEGGEAAAAEPAGQLDKQALLYCERFVEFLTDLLSQLPTR 537
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A498KD47_MALDO (Aquarius_N domain-containing protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498KD47_MALDO) HSP 1 Score: 97.1 bits (240), Expect = 6.270e-20 Identity = 51/115 (44.35%), Postives = 73/115 (63.48%), Query Frame = 1
Query: 49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVW 393
++L +I D + +A +NW++ ++ A K F P+LV+ IYR E+ + RA P S R+ +LE+S YLENYLWPNFDPET+T EH+MS IL++N KF E V+ W
Sbjct: 38 ITLLDIQRDRLTMIAADNWSKTLD------ASQPKKPFDPELVNEIYRTELS--VGEGQRRAVP--SQRVMILEVSQYLENYLWPNFDPETATFEHVMSMILIVNEKFRENVAAW 142
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A1Y1HSV8_KLENI (Intron-binding protein aquarius n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HSV8_KLENI) HSP 1 Score: 104 bits (259), Expect = 8.400e-20 Identity = 63/171 (36.84%), Postives = 97/171 (56.73%), Query Frame = 1
Query: 979 RSGWEGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHL-KMGVNRSTKPRTAMERYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPPRKLLD-----FCERFMEFMIDLLCQLPTR 1473
+ G +++ ER Y+ FL+N FQSLE+ +V+ VL+LV LPLW AL P RR + K++ ++ W L + + K + + E +FMPG++ FL T+E T +D +T G A + ++G++AP +D +CERF+EF+IDLL QLPTR
Sbjct: 164 KEGERQMTIQERTNYLLFLINCFQSLEDEMVQRPVLKLVSLPLWHALSPGRRQAQFKSYEKMGELWDRLQRREAKEAKKGGDPLSKPEVQFMPGMLHEFLQTLETVISTAEAKTDGDEPMTEAG----AAIVDGAEGEEAPIAGQVDTSKLLYCERFVEFLIDLLSQLPTR 330
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A7J6G1K1_CANSA (Uncharacterized protein n=4 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6G1K1_CANSA) HSP 1 Score: 103 bits (258), Expect = 1.140e-19 Identity = 52/115 (45.22%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 49 LSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTKGKFKPKLVSAIYRKEMRSCMPIPGARAGPESSSRLQLLEISGYLENYLWPNFDPETSTTEHLMSAILLINSKFHEGVSVW 393
++LSEI +D + +A ENW++ A A +K FKP+LV IY E+ + + P R+ +LE+S YLENYLWPNFDPET+T EH+MS I++IN KF E V+ W
Sbjct: 46 ITLSEIQQDRLTQLAMENWSK------AGEAAKSKKPFKPELVKEIYETELL----VKEGQRKPVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMSMIIMINEKFRENVAAW 150
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Match: A0A2P6V3R4_9CHLO (Intron-binding aquarius n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V3R4_9CHLO) HSP 1 Score: 103 bits (258), Expect = 1.160e-19 Identity = 68/167 (40.72%), Postives = 90/167 (53.89%), Query Frame = 1
Query: 991 EGLSLHERIAYVTFLVNVFQSLEEPVVRSNVLRLVYLPLWGALQPVRRALELKAFPQLKRHWLHLKMGVNRSTKPRTAME---RYEWEFMPGLVRMFLSTVEGYGETCSLASDRKGVVTSGGGSGAAGTGENSKGDKAPP---RKLLDFCERFMEFMIDLLCQLPTR 1473
E + +HER+A++ F +N FQSLE+ VR+ VLRLV LPLW AL R LEL PQL +HW HL ++ + R E F+PGL+ FL+ V+G VV +G +GD AP R+ L +CERF+E + DLL QLPTR
Sbjct: 366 ERMRMHERVAFLVFWINAFQSLEDEAVRAQVLRLVSLPLWHALSRGRLQLELHDQPQLAKHWRHLAKREAKAAAQEGHVPVALRPEAAFLPGLLDEFLAVVQG-------------VVPAG--------AMEEEGDAAPKPLDRQALLYCERFVELLTDLLSQLPTR 511 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19531.5444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19531.5444.1 >prot_H-elongata_contig19531.5444.1 ID=prot_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=494bp GAVGATGLKRKRTGGLLSLSEIHEDEVMAVANENWARGMNPTTAAVAVPTback to top mRNA from alignment at H-elongata_contig19531:202..4843- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19531.5444.1 ID=mRNA_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4642bp|location=Sequence derived from alignment at H-elongata_contig19531:202..4843- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19531:202..4843- >mRNA_H-elongata_contig19531.5444.1 ID=mRNA_H-elongata_contig19531.5444.1|Name=mRNA_H-elongata_contig19531.5444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2964bp|location=Sequence derived from alignment at H-elongata_contig19531:202..4843- (Himanthalia elongata Himel1 dioecious)back to top |