mRNA_H-elongata_contig19494.5425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19494.5425.1
Unique NamemRNA_H-elongata_contig19494.5425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 100 bits (250), Expect = 9.670e-27
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW ++ELI+D
Sbjct:   19 RALQISMNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.850e-26
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+++ELI+D
Sbjct:  102 RALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.000e-25
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW ++ELI+D
Sbjct:  103 RALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.310e-25
Identity = 47/58 (81.03%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+++ELI+D
Sbjct:  141 RALQISMNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-25
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWAV+ELI+D
Sbjct:   87 RALQISMNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 144
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BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 99.0 bits (245), Expect = 2.770e-25
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+++ELII+
Sbjct:   76 RALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133
[Close]
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 99.0 bits (245), Expect = 2.770e-25
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+++ELII+
Sbjct:   76 RALQISMNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133
[Close]
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 4.140e-25
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELII 171
            R L  SMNAP+MVD+EN TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA+EEL+I
Sbjct:   78 RALQISMNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134
[Close]
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7S0CAC4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAC4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.220e-25
Identity = 45/58 (77.59%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 RPLFHSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            R L  SMNAPVMVD++ ETDPL IAMKELRERKIPI IRRY+PDGSHEDW+++ELI+D
Sbjct:   93 RALQISMNAPVMVDLDGETDPLMIAMKELRERKIPIIIRRYMPDGSHEDWSIDELIVD 150
[Close]
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A314XNN0_PRUYE (DNA-directed RNA polymerase II family protein n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XNN0_PRUYE)

HSP 1 Score: 97.4 bits (241), Expect = 6.800e-25
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:   13 HSMNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 174
            HSMNAPVMV++E ETDPL+IAMKELRERKIP  IRRYLPDGS+EDW V+ELI++
Sbjct:   52 HSMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVE 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS9.670e-2781.03Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A7R9ZBL4_9STRA4.850e-2681.03Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E4M0_9STRA1.000e-2581.03Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U0JRN7_9STRA1.310e-2581.03Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1Z5JVB2_FISSO1.860e-2581.03DNA-directed RNA polymerases I, II, and III subuni... [more]
K3WS78_GLOUD2.770e-2582.76Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL2.770e-2582.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZH45_9STRA4.140e-2582.46DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7S0CAC4_9STRA6.220e-2577.59Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A314XNN0_PRUYE6.800e-2579.63DNA-directed RNA polymerase II family protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19494contigH-elongata_contig19494:2083..2259 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9.3e-19
Seed eggNOG ortholog35128.Thaps262598
Preferred namepolr2f
KEGG rclassRC02795
KEGG koko:K00960,ko:K03014
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181,M00182
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000418,GO:0000419,GO:0000428,GO:0001650,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006383,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030880,GO:0031974,GO:0031981,GO:0032502,GO:0032774,GO:0032991,GO:0033554,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0036260,GO:0040029,GO:0042221,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065007,GO:0070013,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071704,GO:0071774,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.RNA polymerase Rpb6
EggNOG OGs2XDIN@2836,COG1758@1,KOG3405@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size177
Cds size159
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.3160927-UTR-H-elongata_contig19494:2082..21001622930108.3160927-UTR-H-elongata_contig19494:2082..2100Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 2083..2100 +
1691679283.4133904-UTR-H-elongata_contig19494:2082..21001691679283.4133904-UTR-H-elongata_contig19494:2082..2100Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19494 2083..2100 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930108.3276646-CDS-H-elongata_contig19494:2100..22591622930108.3276646-CDS-H-elongata_contig19494:2100..2259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 2101..2259 +
1691679283.4236724-CDS-H-elongata_contig19494:2100..22591691679283.4236724-CDS-H-elongata_contig19494:2100..2259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19494 2101..2259 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19494.5425.1prot_H-elongata_contig19494.5425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19494 2101..2259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19494.5425.1

>prot_H-elongata_contig19494.5425.1 ID=prot_H-elongata_contig19494.5425.1|Name=mRNA_H-elongata_contig19494.5425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELI
ID*
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mRNA from alignment at H-elongata_contig19494:2083..2259+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19494.5425.1 ID=mRNA_H-elongata_contig19494.5425.1|Name=mRNA_H-elongata_contig19494.5425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig19494:2083..2259+ (Himanthalia elongata Himel1 dioecious)
CGACCTCTCTTTCACAGTATGAACGCTCCGGTGATGGTGGATATCGAGAA
CGAAACGGACCCCTTGAAGATCGCCATGAAGGAGCTTCGGGAGCGGAAAA
TTCCGATAAAAATCAGAAGGTACCTACCAGACGGTAGCCACGAAGACTGG
GCCGTCGAAGAGCTTATCATCGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig19494:2083..2259+

>mRNA_H-elongata_contig19494.5425.1 ID=mRNA_H-elongata_contig19494.5425.1|Name=mRNA_H-elongata_contig19494.5425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig19494:2083..2259+ (Himanthalia elongata Himel1 dioecious)
ATGAACGCTCCGGTGATGGTGGATATCGAGAACGAAACGGACCCCTTGAA
GATCGCCATGAAGGAGCTTCGGGAGCGGAAAATTCCGATAAAAATCAGAA
GGTACCTACCAGACGGTAGCCACGAAGACTGGGCCGTCGAAGAGCTTATC
ATCGACTGAATGAACGCTCCGGTGATGGTGGATATCGAGAACGAAACGGA
CCCCTTGAAGATCGCCATGAAGGAGCTTCGGGAGCGGAAAATTCCGATAA
AAATCAGAAGGTACCTACCAGACGGTAGCCACGAAGACTGGGCCGTCGAA
GAGCTTATCATCGACTGA
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