prot_H-elongata_contig19494.5425.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19494.5425.1
Unique Nameprot_H-elongata_contig19494.5425.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: B8C3F5_THAPS (Dna-directed RNA polymerase i (Fragment) n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C3F5_THAPS)

HSP 1 Score: 98.6 bits (244), Expect = 6.160e-26
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD+E ETDPLKIA KELRERKIPI IRRYLPDGSHEDW ++ELI+D
Sbjct:   25 MNAPVMVDLEGETDPLKIAQKELRERKIPIVIRRYLPDGSHEDWGIDELIVD 76          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7R9ZBL4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBL4_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.040e-25
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+++ELI+D
Sbjct:  108 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 159          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7S2E4M0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E4M0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.270e-25
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW ++ELI+D
Sbjct:  109 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWKIDELIVD 160          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A6U0JRN7_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JRN7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.090e-25
Identity = 44/52 (84.62%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPLKIAMKELRERKIPI IRRYLPDGSHEDW+++ELI+D
Sbjct:  147 MNAPVMVDLDGETDPLKIAMKELRERKIPIIIRRYLPDGSHEDWSIDELIVD 198          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A1Z5JVB2_FISSO (DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVB2_FISSO)

HSP 1 Score: 97.4 bits (241), Expect = 1.170e-24
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPLKIA KELRERKIPI IRRY+PDGSHEDWAV+ELI+D
Sbjct:   93 MNAPVMVDLDGETDPLKIAEKELRERKIPIIIRRYMPDGSHEDWAVDELIVD 144          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: K3WS78_GLOUD (Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4782 RepID=K3WS78_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-24
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+++ELII+
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A8K1FM68_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM68_PYTOL)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-24
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVDIE ETDPLKIAMKELRERKIPI IRRYLPDGS EDW+++ELII+
Sbjct:   82 MNAPVMVDIEGETDPLKIAMKELRERKIPIIIRRYLPDGSFEDWSIDELIIE 133          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A835ZH45_9STRA (DNA-directed RNA polymerases I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH45_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.610e-24
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELII 51
            MNAP+MVD+EN TDPLKIA KELRERKIPIKIRRYLPDGS+EDWA+EEL+I
Sbjct:   84 MNAPIMVDLENMTDPLKIAEKELRERKIPIKIRRYLPDGSYEDWALEELMI 134          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A7S0CAC4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CAC4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.900e-24
Identity = 42/52 (80.77%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPL IAMKELRERKIPI IRRY+PDGSHEDW+++ELI+D
Sbjct:   99 MNAPVMVDLDGETDPLMIAMKELRERKIPIIIRRYMPDGSHEDWSIDELIVD 150          
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Match: A0A6U3VZ54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VZ54_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.360e-24
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = 0
Query:    1 MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELIID 52
            MNAPVMVD++ ETDPLKIAM+ELRERKIPI IRRYLPDGSHEDW ++ELI+D
Sbjct:  145 MNAPVMVDLDGETDPLKIAMRELRERKIPIIIRRYLPDGSHEDWKIDELIVD 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19494.5425.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B8C3F5_THAPS6.160e-2684.62Dna-directed RNA polymerase i (Fragment) n=2 Tax=B... [more]
A0A7R9ZBL4_9STRA3.040e-2584.62Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2E4M0_9STRA6.270e-2584.62Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U0JRN7_9STRA8.090e-2584.62Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A1Z5JVB2_FISSO1.170e-2484.62DNA-directed RNA polymerases I, II, and III subuni... [more]
K3WS78_GLOUD1.740e-2486.54Uncharacterized protein n=3 Tax=Pythiaceae TaxID=4... [more]
A0A8K1FM68_PYTOL1.740e-2486.54Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835ZH45_9STRA2.610e-2486.27DNA-directed RNA polymerases I n=1 Tax=Tribonema m... [more]
A0A7S0CAC4_9STRA3.900e-2480.77Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A6U3VZ54_9STRA4.360e-2482.69Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006111Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..52
e-value: 6.3E-25
score: 85.8
IPR012293RNA polymerase subunit, RPB6/omegaGENE3D3.90.940.10coord: 1..52
e-value: 1.1E-24
score: 88.8
NoneNo IPR availablePANTHERPTHR47227FAMILY NOT NAMEDcoord: 1..51
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 1..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19494contigH-elongata_contig19494:2101..2259 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19494.5425.1mRNA_H-elongata_contig19494.5425.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19494 2083..2259 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19494.5425.1 ID=prot_H-elongata_contig19494.5425.1|Name=mRNA_H-elongata_contig19494.5425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MNAPVMVDIENETDPLKIAMKELRERKIPIKIRRYLPDGSHEDWAVEELI
ID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006111RpoK/Rpb6
IPR012293RNAP_RPB6_omega
IPR036161RPB6/omega-like_sf