mRNA_H-elongata_contig19484.5421.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19484.5421.1
Unique NamemRNA_H-elongata_contig19484.5421.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D8LPM3_ECTSI (Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPM3_ECTSI)

HSP 1 Score: 426 bits (1096), Expect = 5.120e-147
Identity = 210/335 (62.69%), Postives = 261/335 (77.91%), Query Frame = 1
Query:    1 MVSAHSKT--ARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
            M SAHS    A+++ +D+RGKHFVVTGANTG+GY T+RELAKMG  VT+ACRSAERG+ AIDK++ EAL KPV++G DLLEGL DVDVRLE+LDL SL S+++F++R K + ++V+VLINNAG+M   E+ ET +G EM IGVNHFG HLLTRLMEPL+ DGGRVIF SS  H Q P     T+D++N+N+EKP +YN W AYGRSKL N+LDAKEF KRL  R I  YA  PG V+T+++RNMTD S  SR+TR  AP++++++   L GALTT+RCAVDP+L  PE SGKYW  MKEE  SELA DPA  PR W+VTE +LE KLGK VD+L+
Sbjct:    1 MGSAHSTNCKAKSVCQDLRGKHFVVTGANTGLGYATTRELAKMGAAVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLEGLTDVDVRLEVLDLGSLQSVIAFAQRFKASGTKVDVLINNAGIMAIPERRETVDGLEMQIGVNHFGGHLLTRLMEPLMNDGGRVIFLSSLGHRQPPGQAKVTLDFDNVNYEKPDTYNSWMAYGRSKLANILDAKEFAKRLEARGISTYACHPGIVNTELMRNMTDSSLMSRVTRLTAPLSRFILATPLTGALTTIRCAVDPSLAGPEFSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEAKLGKNVDDLL 335          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D8LP30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP30_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 8.270e-132
Identity = 199/333 (59.76%), Postives = 257/333 (77.18%), Query Frame = 1
Query:    7 SAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTR--FLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
            S  ++ A+++ +D+RGKHF+VTGANTG+GYVT+RELAKMG KVT+ACRSAERG+ AIDK++ EAL KPV++G DLL+GL +VDVRLE+LDL SL S+V+F++R K + ++V+VL+NNAG+ G   + ETA+G EM IGVNHFG HLLTRLMEP + DGGRV+F SS AH + P +P TT DW+N+NF+KP +Y++ +AY RSKL N+ DAKEF KRLA R+I  YAV PG V T+I R +  G     +    ++A    +L  P L GALTT+RCAVDP+L  PELSGKYW  MKEE  SELA DPA  PR W+VTE +LEEKLGK+VD+++
Sbjct:  154 SKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKMKAEALEKPVKEGVDLLDGLTEVDVRLEVLDLGSLQSVVAFAQRFKASGTKVDVLVNNAGIFGVPNRRETADGLEMQIGVNHFGGHLLTRLMEPSMNDGGRVLFLSSLAHSRPPGMPKTTWDWDNVNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLMMPIVNAGYVALGWVWLKGP-LDGALTTVRCAVDPSLAGPELSGKYWGNMKEETPSELALDPANPPRLWEVTESVLEEKLGKRVDDVV 485          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A6H5JP92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP92_9PHAE)

HSP 1 Score: 383 bits (984), Expect = 5.440e-130
Identity = 194/332 (58.43%), Postives = 250/332 (75.30%), Query Frame = 1
Query:    7 SAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTR--FLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDEL 996
            S  ++ A+++ +D+RGKHF+VTGANTG+GYVT+RELAKMG KVT+ACRSAERG+ AIDKL+ E L KP ++G DLL+GL +VDVRLE+LDL SL S+++F++  K + ++V+VL+NNAG+ G   + ETA+G EM IGVNHFG HLLTRLMEP I DGGRV+F SS  H + P +P TT DW+N+NF+KP +Y++ +AY RSKL N+ DAKEF KRLA R+I  YAV PG V T+I R +  G     +    + A    +L  P L GALTT+RCAVDP L  PELSGKYW  MKEE  SELA DPA  PR W++TE +LE+KLGK+VD++
Sbjct:    7 SKATRKAKSLRQDLRGKHFIVTGANTGLGYVTARELAKMGAKVTLACRSAERGQQAIDKLKAEVLEKPAKEGVDLLDGLTEVDVRLEVLDLGSLRSVIAFAQGFKASGTKVDVLVNNAGIFGVPNRRETADGLEMHIGVNHFGGHLLTRLMEPSINDGGRVLFLSSLTHSRPPGMPKTTWDWDNMNFDKPKTYDRLSAYCRSKLANIWDAKEFAKRLAARSINTYAVQPGLVKTEIHRGIGGGKLIMPIVNAGYAALGWVWLKGP-LDGALTTIRCAVDPCLAGPELSGKYWGNMKEETPSELALDPANPPRLWEITESVLEDKLGKRVDDV 337          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: D7FTL4_ECTSI (Similar to Retinol dehydrogenase 12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTL4_ECTSI)

HSP 1 Score: 220 bits (561), Expect = 7.120e-68
Identity = 112/211 (53.08%), Postives = 138/211 (65.40%), Query Frame = 1
Query:  367 MGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLGKKVDELI 999
            M    +  T +G E  IGVNHFG HLLTRLME  I DGGRV+F SS AH           DW+N+N+ KP  Y    AYGRSKL NVLDAK F   L+DR I  YA+ PG V+TD+ RN+TDG   SR+ R    +  +++   L G+LTTLRCA+DPAL  PE SGKYW  MK+   S LASDPA  PR W++TE++LE KLGKK++ L+
Sbjct:    1 MAIPTEERTVDGLEKQIGVNHFGTHLLTRLMEKQIIDGGRVVFLSSVAHKHG------GWDWDNVNYTKPNKYVPMIAYGRSKLANVLDAKAFAGHLSDRRINTYALHPGVVNTDLFRNVTDGRLISRVFRVAKSLGAFVLASPLTGSLTTLRCAIDPALAGPEFSGKYWSHMKQVQPSALASDPANPPRLWEITEELLETKLGKKIENLL 205          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A433SZU2_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SZU2_ELYCH)

HSP 1 Score: 197 bits (501), Expect = 2.940e-57
Identity = 123/310 (39.68%), Postives = 180/310 (58.06%), Query Frame = 1
Query:   55 KHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLI--ADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEKLG 978
            K  ++TGANTG+G  T+R+LAK GG++ MACR+ E+G         EA  K      +++E  ++ DV ++ LDL+S  SI +F+++  E  +R+++LINNAGVM    K  T +G EM IG NHFG  LLT L+   +      R++  SS AH  A      +I W++IN +K   Y  WAAYG+SKL N+L   E + RL    + V +V PG V+TD+ R+   G F     + L P++K      + GA TTL CA+ P LE  E+SGKY+   KE+  S      A + R W++TE+I+++KL 
Sbjct:   14 KTVLITGANTGLGKETARDLAKRGGRIIMACRNLEKG---------EATRK------EIVEETKNEDVVVQELDLASFESIQNFAKKFNETETRLDILINNAGVMA-CPKTLTKDGLEMQIGTNHFGHFLLTNLLLDKLKACSPSRIVILSSMAHAFA------SIKWDDINSDK--KYGDWAAYGQSKLANILHCLELSNRLKGTGVTVNSVHPGGVNTDLQRHTNRGIF-----KLLKPLSKLFFKTPVDGAQTTLYCALSPDLE--EVSGKYFVDCKEKAPSRRGQSEADAKRLWELTEEIIQQKLS 292          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A6H5JGN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN4_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 2.320e-54
Identity = 94/178 (52.81%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  220 GADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGGRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRM 753
            G DLLEGL DVDV++E+LDL  L S+VSF++RLK +  +++VLI+NAG+M    +  + +G E  IGVNHF  HLL+RLM   I DGGRV+F SS AH           DW+N+N+ KP  +    AYGRSKL NVLDAK F   L+DR I  YA+ PG V+TD+ RN TDG   SRM
Sbjct:   29 GVDLLEGLSDVDVQVEVLDLGVLQSVVSFAQRLKSSGQKIDVLIDNAGIMAIPTEKRSVDGLEKQIGVNHFVTHLLSRLMGKQIIDGGRVVFFSSVAHKHG------GCDWDNVNYTKPNEHGPMIAYGRSKLANVLDAKGFAGHLSDRRINTYALHPGVVNTDLFRNATDGRLISRM 200          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A397JNC4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JNC4_9GLOM)

HSP 1 Score: 173 bits (439), Expect = 3.030e-48
Identity = 116/319 (36.36%), Postives = 179/319 (56.11%), Query Frame = 1
Query:   43 DVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYL---IPPALKGALTTLRCAVDPALEIPELSGKYW--HGMKEEPASELASDPAFSPRYWKVTEDILEEKLG 978
            D++GK  +VTGANTGIG++T+RELA+    V +ACR   +G+ AID+++QE        G D +E L         LDLSSL S++  +    + +  +++L+NNAG+M     + T +G +   GVNH G  L T  + P I      R++  SS AH +AP      ID+ENIN   P +Y+ +  YG+SKL N+L + E  KRLAD+ +YV +V PG V T++ RN+ D      M   + P+   L   +  A +GA+T+L CA  P +    L G+Y+   G   +P  +L +D   + + WK +E+++ +KL 
Sbjct:   18 DLQGKIAIVTGANTGIGFITARELARKNAHVFVACRDQAKGEKAIDEIKQET-------GNDKVEYLP--------LDLSSLKSVLKATELFLDRKLPLHILVNNAGIMATPFTL-TEDGIQDQFGVNHIGHFLFTIKLLPTIEASAPSRIVNLSSMAHSRAPKCG---IDFENIN--NPDTYSPFTRYGQSKLANILFSLELNKRLADKEVYVNSVHPGIVRTELTRNLKDS-----MGLIVKPIEMVLGLFMISAEEGAITSLYCATSPEIIEKNLRGQYFVPAGKLSKP-EKLGTDENLALKLWKYSEELINKKLN 309          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A3S0Z7Y7_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z7Y7_ELYCH)

HSP 1 Score: 174 bits (441), Expect = 4.740e-48
Identity = 119/312 (38.14%), Postives = 175/312 (56.09%), Query Frame = 1
Query:   46 VRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLM-EPLIADG-GRVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFL-APVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILEEK 972
            + GK  V+TG NTGIG+ T+++LA+ G ++ MACR  ER + A  K++               + +   +V  + LDLSS  SI +F        +R+++LINNAGVM    +M T +G EM +G NHFG  LLT L+ + L A    R++  SS AH +        I++++IN EK  SY K  AY +SKL N+L  KE T+RL    +  YA+ PG V T++ R++   +  + +  FL AP+   L+   L+GA TTL CA++PA E   +SGKY+   KE+  S  A D   + R W V+ +I E K
Sbjct:   63 LNGKTVVITGCNTGIGFETAKDLAQRGARIIMACRDMERCEAAASKIK---------------DIVNSNNVICKKLDLSSFESIRAFCDEFNRTEARLDILINNAGVM-MCPRMLTKDGLEMQLGTNHFGHFLLTNLLLDKLKASRPSRIVAVSSRAHTRT-----QGINFDDINSEK--SYEKMTAYSQSKLANILHVKELTRRLEGTGVTAYALHPGVVATELPRHIALAN--NPIILFLTAPLRYILLKTPLEGAQTTLACALNPAWET--ISGKYYSDCKEKEPSLPAQDAEAAKRLWDVSVEITEGK 347          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: A0A2P6NN59_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN59_9EUKA)

HSP 1 Score: 172 bits (435), Expect = 4.880e-47
Identity = 111/310 (35.81%), Postives = 173/310 (55.81%), Query Frame = 1
Query:   43 DVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYV--YAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDI 960
            D++GK  ++TGANTGIG +T++E+AKMG  V +A R  ER   A++KL++E+       G+  +E LQ        LDL+S  S+  F++   E    +++L+NNAGVM   ++  T +G EM +G+NHFG  LLT L+   +      R++  SS  H  A       ++ E+IN EKPGSY  W  YG SKL N+L A +  K+     + V  +++ PG + T++ RN+     T  + R + P+  +L  P  +GALT++ CAV P  E  +  GKY    +E  A    ++   + + WK++EDI
Sbjct:   82 DLKGKVAIITGANTGIGLITAKEIAKMGAHVIVASRDPERSLAAVEKLKEES-------GSQQIEFLQ--------LDLASFASVRDFAKAFHEKNLPLHILVNNAGVMALPQRQTTKDGLEMQMGINHFGHFLLTNLLLDDLKKSAPSRIVNVSSEGHKMA------KMNLEDINCEKPGSYGPWRVYGNSKLSNILFAMQLQKQFDQEKVDVSAWSLHPGTIRTELGRNLE--GITGYLNRTIGPL--FLKTPE-QGALTSIFCAVRP--EALQSRGKYMSNCRE--AGTWHANEELAEKLWKLSEDI 361          
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Match: UPI001F03DF24 (retinol dehydrogenase 13-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03DF24)

HSP 1 Score: 170 bits (431), Expect = 6.860e-47
Identity = 101/309 (32.69%), Postives = 174/309 (56.31%), Query Frame = 1
Query:   46 VRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACRSAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIVSFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*IGVNHFGVHLLTRLMEPLIADGG--RVIFTSSGAHVQAPTLPPTTIDWENINFEKPGSYNKWAAYGRSKLGNVLDAKEFTKRLADRAIYVYAVDPGFVHTDILRNMTDGSFTSRMTRFLAPVTKYLIPPALKGALTTLRCAVDPALEIPELSGKYWHGMKEEPASELASDPAFSPRYWKVTEDILE 966
            ++GK  ++TGANTGIG  T+  LA  G ++ MACRS ERG+ A++               D+++   + D+ L+ LDLSS  S+  F+  +  + ++++VLINNAG++   E+  + +G E+ + VNHFG  LLT L+  L+      R++  SSGAH        + I  +++ FEK  SYN+W AYG+SKL N+L  +E  KRL    +   ++ PG + T++ R     + +  + +FL  ++  ++    +GA TT+  AV    ++  ++GKY+   +E   +  A D   + R W+++E+I++
Sbjct:   36 MKGKTVIITGANTGIGKSTAINLASRGARIIMACRSLERGQAALN---------------DIVKQTGNNDIILKHLDLSSFKSVRKFAEEIYSSENKIDVLINNAGLVSTTERQVSKDGLELTMAVNHFGHFLLTNLLLDLLRRSAPSRIVVVSSGAHYSIANTK-SHIKLDDLQFEK--SYNEWEAYGQSKLANILFTRELAKRLKGTGVTANSLHPGVIFTELSRY----ALSENVNKFLNFISPVVMKTLEEGAQTTIHLAVSE--DVANVTGKYFVDCEETKPAHTAEDDDGAKRLWEISEEIVQ 320          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19484.5421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPM3_ECTSI5.120e-14762.69Short-chain dehydrogenase n=2 Tax=Ectocarpus TaxID... [more]
D8LP30_ECTSI8.270e-13259.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP92_9PHAE5.440e-13058.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTL4_ECTSI7.120e-6853.08Similar to Retinol dehydrogenase 12 n=1 Tax=Ectoca... [more]
A0A433SZU2_ELYCH2.940e-5739.68Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A6H5JGN4_9PHAE2.320e-5452.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397JNC4_9GLOM3.030e-4836.36Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A3S0Z7Y7_ELYCH4.740e-4838.14Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A2P6NN59_9EUKA4.880e-4735.81Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
UPI001F03DF246.860e-4732.69retinol dehydrogenase 13-like n=1 Tax=Xenia sp. Ca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19484contigH-elongata_contig19484:1895..3589 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue8.3e-43
Seed eggNOG ortholog2880.D8LPM3
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1002
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19484.5421.1prot_H-elongata_contig19484.5421.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19484 2483..3589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.9121864-UTR-H-elongata_contig19484:1894..24821622930107.9121864-UTR-H-elongata_contig19484:1894..2482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19484 1895..2482 -
1691679283.2551045-UTR-H-elongata_contig19484:1894..24821691679283.2551045-UTR-H-elongata_contig19484:1894..2482Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19484 1895..2482 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930107.9307084-CDS-H-elongata_contig19484:2482..26771622930107.9307084-CDS-H-elongata_contig19484:2482..2677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19484 2483..2677 -
1691679283.2765636-CDS-H-elongata_contig19484:2482..26771691679283.2765636-CDS-H-elongata_contig19484:2482..2677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19484 2483..2677 -
1622930107.9536848-CDS-H-elongata_contig19484:3370..35891622930107.9536848-CDS-H-elongata_contig19484:3370..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19484 3371..3589 -
1691679283.2841308-CDS-H-elongata_contig19484:3370..35891691679283.2841308-CDS-H-elongata_contig19484:3370..3589Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19484 3371..3589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19484.5421.1

>prot_H-elongata_contig19484.5421.1 ID=prot_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
MVSAHSKTARTIARDVRGKHFVVTGANTGIGYVTSRELAKMGGKVTMACR
SAERGKNAIDKLRQEALAKPVEQGADLLEGLQDVDVRLEILDLSSLHSIV
SFSRRLKEARSRVNVLINNAGVMGFAEKMETANGFEM*
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mRNA from alignment at H-elongata_contig19484:1895..3589-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19484.5421.1 ID=mRNA_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1695bp|location=Sequence derived from alignment at H-elongata_contig19484:1895..3589- (Himanthalia elongata Himel1 dioecious)
ATGGTATCGGCACACTCCAAGACGGCCAGGACCATCGCCCGAGACGTCAG GGGCAAACATTTCGTCGTGACCGGTGCGAACACTGGTATAGGGTACGTGA CGTCCCGAGAGCTCGCCAAGATGGGAGGCAAAGTCACGATGGCGTGCAGG AGTGCCGAGAGGGGGAAAAACGCGATCGATAAGCTGCGTCAGGAGGCTCT GGCGAAGCCTGTCGAACAGGTGCGCAGAAACGTTACTTATTTTGAATGTA TTATGTTCTCCCACAAGCATGGCACGAACATTTTGCTTGCCCGACGAGCT CCCACCCCAGCTACAGCAAAGCTGTGGGGGAGAATGTAGACGACATGCTT TTCTCGTGCTATGAAGGACACGAATCACCGCCGACTCGACGTCGCGCCAC GTACGACTTTGGTGCTCTGGGGCTATCGTGCTAGGGTCTCGATGACTGTT TGTATGATAGATACGATATGACATACCCCGGCAAATCGAAGCGGTTGAAC TTGTAACACCCTGAACGAGCAGTCCGTGTAACAGCCGCCGCCGCGATACC GCCTTTCAAGATTTAGCGTAAACCGCGCCGCCGAATAGCTATATATCTCC GATGGGCACGCGACGCTGTTGGGCGTCAGAAACGGTCAAGAGCTTTGATA GCCCAGGGCAGCCGGTGGATCGAAGAACTATCCCTCGTCCCAGTAAAATC GTTTGAGTGCGTGAGTAGCTCCGCGATCGGCATGGTGGAAGCACTATTAT ATCTGAACGCCTCACCATGTTCGAAAGTGTCTTACGAGACTACTATAATA ATGTAATGCCATAACACGATGAAGACGCCGCCAGCTCGTCGACCTTACTT TTTGGGAATGCAAGGCCGTATCCTTCACTGATCTGCTGCGCGGTGCCTTC CTTGATGTTCAGGGGGCAGACCTCTTGGAAGGATTACAAGACGTGGATGT TAGGCTGGAGATCCTTGACTTATCCTCCCTTCACTCCATCGTGTCATTTT CGAGGAGACTCAAGGAGGCCAGATCAAGGGTGAACGTCCTAATAAATAAC GCCGGAGTCATGGGCTTTGCTGAGAAAATGGAAACGGCAAACGGTTTCGA GATGTAGATAGGGGTGAACCACTTCGGCGTCCACCTTCTGACGAGGCTGA TGGAGCCACTGATAGCCGACGGCGGCCGCGTCATATTTACCTCGTCCGGA GCACACGTACAGGCGCCGACCCTTCCCCCGACGACGATAGACTGGGAAAA CATCAATTTCGAGAAGCCGGGGTCGTATAACAAATGGGCTGCCTACGGAC GGTCGAAGCTCGGGAACGTCCTGGACGCTAAGGAGTTCACCAAGCGCCTA GCTGATCGTGCGATCTACGTCTACGCCGTGGACCCGGGGTTCGTCCACAC AGATATATTGCGCAACATGACAGATGGCAGCTTCACGTCGCGCATGACAA GGTTCTTAGCGCCGGTCACCAAGTACTTGATTCCTCCGGCGCTCAAGGGT GCGCTGACGACCCTCCGGTGCGCCGTGGATCCTGCCCTTGAAATCCCGGA GCTTTCGGGTAAGTACTGGCACGGCATGAAGGAGGAACCGGCGTCTGAAC TCGCGTCGGATCCAGCCTTTTCACCTCGCTATTGGAAGGTCACGGAAGAT ATTCTAGAAGAAAAGCTCGGAAAGAAAGTGGACGAGCTGATCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig19484:1895..3589-

>mRNA_H-elongata_contig19484.5421.1 ID=mRNA_H-elongata_contig19484.5421.1|Name=mRNA_H-elongata_contig19484.5421.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig19484:1895..3589- (Himanthalia elongata Himel1 dioecious)
ATGGTATCGGCACACTCCAAGACGGCCAGGACCATCGCCCGAGACGTCAG
GGGCAAACATTTCGTCGTGACCGGTGCGAACACTGGTATAGGGTACGTGA
CGTCCCGAGAGCTCGCCAAGATGGGAGGCAAAGTCACGATGGCGTGCAGG
AGTGCCGAGAGGGGGAAAAACGCGATCGATAAGCTGCGTCAGGAGGCTCT
GGCGAAGCCTGTCGAACAGATGGTATCGGCACACTCCAAGACGGCCAGGA
CCATCGCCCGAGACGTCAGGGGCAAACATTTCGTCGTGACCGGTGCGAAC
ACTGGTATAGGGTACGTGACGTCCCGAGAGCTCGCCAAGATGGGAGGCAA
AGTCACGATGGCGTGCAGGAGTGCCGAGAGGGGGAAAAACGCGATCGATA
AGCTGCGTCAGGAGGCTCTGGCGAAGCCTGTCGAACAGGGGGCAGACCTC
TTGGAAGGATTACAAGACGTGGATGTTAGGCTGGAGATCCTTGACTTATC
CTCCCTTCACTCCATCGTGTCATTTTCGAGGAGACTCAAGGAGGCCAGAT
CAAGGGTGAACGTCCTAATAAATAACGCCGGAGTCATGGGCTTTGCTGAG
AAAATGGAAACGGCAAACGGTTTCGAGATGTAGGGGGCAGACCTCTTGGA
AGGATTACAAGACGTGGATGTTAGGCTGGAGATCCTTGACTTATCCTCCC
TTCACTCCATCGTGTCATTTTCGAGGAGACTCAAGGAGGCCAGATCAAGG
GTGAACGTCCTAATAAATAACGCCGGAGTCATGGGCTTTGCTGAGAAAAT
GGAAACGGCAAACGGTTTCGAGATGTAG
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