mRNA_H-elongata_contig106601.541.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106601.541.1
Unique NamemRNA_H-elongata_contig106601.541.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.690e-27
Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVSRLPAGLTDRW KDRRF AAWSLVRELRPS FLTT S  L GAQEAYESLGAGSELGVVFRY
Sbjct:  945 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESLGAGSELGVVFRY 1008          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A6H5LPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPZ8_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.960e-25
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:   10 RLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            +LPAGLTDRW KDRRF AAWSLVRELRPS FLTT +  L GAQEAYESLGAGSELGVVFRY
Sbjct:  570 KLPAGLTDRWDKDRRFLAAWSLVRELRPSDFLTTSAPPLDGAQEAYESLGAGSELGVVFRY 630          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A7S4D6E6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6E6_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 2.480e-19
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +PA LTDRW+K RRFAAAW LVRELRPSR +T+R   +  AQE YE L AG ELGV F Y
Sbjct:  118 QVSNVPAALTDRWTKARRFAAAWELVRELRPSRHITSRVAHVSEAQEMYERLLAGQELGVQFTY 181          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: B7G4N7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4N7_PHATC)

HSP 1 Score: 75.1 bits (183), Expect = 3.060e-14
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRYE 195
            QVS++PA L   W+K+RRFA AW LVRE RPSR +T R T L+ AQEAY++L  GSE+ + F Y+
Sbjct:  940 QVSKIPAELGSTWTKERRFALAWELVREYRPSRLVTKR-TKLEDAQEAYDALENGSEIAIAFDYD 1003          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A448ZDQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDQ0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +PA L+  WSK+RRFA  W LV+++RPSR LT +   L  AQ+AYE+L  GSE+ + F Y
Sbjct:  913 QVSEIPANLSRLWSKERRFAYTWDLVKQIRPSRLLT-KIISLDEAQDAYEALDNGSEIAIAFDY 975          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A1E7FW20_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW20_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.940e-12
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +PA ++  WSK+RRFA  W LV+++RPSR L+   T L+ AQEAYE+L  G+E+ + F Y
Sbjct:  347 QVSEIPASMSRLWSKERRFAFTWELVKQIRPSRLLSKILT-LEHAQEAYEALDNGTEIAIAFDY 409          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A835YW36_9STRA (ADH_zinc_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW36_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.350e-10
Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +PA L+ RW+K+RRF AAW LV+++RP+  + TR+      QEA+++L  G  + ++ +Y
Sbjct:  230 QVSHIPAALSARWTKERRFQAAWELVQQIRPAENVATRTIAPGEIQEAFQALETGQHVAIIIKY 293          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A6U3SUV6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SUV6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +P  L   W+K+RRFA  W L++ +RPSR L T++  L  AQEAYE L  G E+ V FRY
Sbjct: 1173 QVSEIPPELRGLWTKERRFALTWELMKLIRPSR-LITKTVTLDQAQEAYELLDRGDEISVSFRY 1235          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: B8BXG1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXG1_THAPS)

HSP 1 Score: 63.9 bits (154), Expect = 2.500e-10
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
            QVS +P+ L   WSK+RRFA  W+LV+ +RPSR L ++S  L  AQ AYE L  G E+ + F Y
Sbjct:  337 QVSTIPSSLAGLWSKERRFAMTWALVKAIRPSR-LISKSLTLDDAQLAYELLDGGKEIAICFMY 399          
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A7S1HEZ9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ9_HEMAN)

HSP 1 Score: 63.9 bits (154), Expect = 2.580e-10
Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRYE 195
            QVS++PA L+ RW KDRRF  AW  V+ ++PS  L T    L  AQ AYE+L +G+ +G  F YE
Sbjct:  490 QVSKIPAHLSGRWDKDRRFLEAWRWVQIIKPSANLGTSVVPLSDAQSAYENLLSGATVGAEFTYE 554          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FVW7_ECTSI1.690e-2789.06ADH_zinc_N domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5LPZ8_9PHAE5.960e-2585.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D6E6_HETAK2.480e-1967.19Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7G4N7_PHATC3.060e-1456.92Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A448ZDQ0_9STRA2.410e-1253.13Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1E7FW20_9STRA7.940e-1251.56Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A835YW36_9STRA1.350e-1042.19ADH_zinc_N domain-containing protein n=1 Tax=Tribo... [more]
A0A6U3SUV6_9STRA1.920e-1051.56Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B8BXG1_THAPS2.500e-1050.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S1HEZ9_HEMAN2.580e-1049.23Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106601contigH-elongata_contig106601:1793..1990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue4.5e-23
Seed eggNOG ortholog2880.D7FVW7
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGs2REAB@2759,COG1063@1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-01_002410.3
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.3617103-CDS-H-elongata_contig106601:1792..19901622929596.3617103-CDS-H-elongata_contig106601:1792..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106601 1793..1990 -
1691679084.400266-CDS-H-elongata_contig106601:1792..19901691679084.400266-CDS-H-elongata_contig106601:1792..1990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106601 1793..1990 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106601.541.1prot_H-elongata_contig106601.541.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106601 1793..1990 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106601.541.1

>prot_H-elongata_contig106601.541.1 ID=prot_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYE
SLGAGSELGVVFRYE*
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mRNA from alignment at H-elongata_contig106601:1793..1990-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106601.541.1 ID=mRNA_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig106601:1793..1990- (Himanthalia elongata Himel1 dioecious)
CAGGTGAGCCGACTGCCTGCCGGGCTCACGGATCGCTGGAGCAAGGACCG CCGCTTTGCCGCCGCTTGGTCGCTCGTGAGAGAGCTGCGCCCTTCGCGCT TCTTAACGACCCGCTCGACGGGTCTCCAAGGGGCACAGGAGGCGTACGAG TCGCTCGGCGCCGGAAGCGAGCTGGGAGTTGTGTTTCGGTATGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig106601:1793..1990-

>mRNA_H-elongata_contig106601.541.1 ID=mRNA_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig106601:1793..1990- (Himanthalia elongata Himel1 dioecious)
CAGGTGAGCCGACTGCCTGCCGGGCTCACGGATCGCTGGAGCAAGGACCG
CCGCTTTGCCGCCGCTTGGTCGCTCGTGAGAGAGCTGCGCCCTTCGCGCT
TCTTAACGACCCGCTCGACGGGTCTCCAAGGGGCACAGGAGGCGTACGAG
TCGCTCGGCGCCGGAAGCGAGCTGGGAGTTGTGTTTCGGTATGAATAGCA
GGTGAGCCGACTGCCTGCCGGGCTCACGGATCGCTGGAGCAAGGACCGCC
GCTTTGCCGCCGCTTGGTCGCTCGTGAGAGAGCTGCGCCCTTCGCGCTTC
TTAACGACCCGCTCGACGGGTCTCCAAGGGGCACAGGAGGCGTACGAGTC
GCTCGGCGCCGGAAGCGAGCTGGGAGTTGTGTTTCGGTATGAATAG
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