mRNA_H-elongata_contig106601.541.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: D7FVW7_ECTSI (ADH_zinc_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVW7_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.690e-27 Identity = 57/64 (89.06%), Postives = 57/64 (89.06%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVSRLPAGLTDRW KDRRF AAWSLVRELRPS FLTT S L GAQEAYESLGAGSELGVVFRY
Sbjct: 945 QVSRLPAGLTDRWDKDRRFLAAWSLVRELRPSVFLTTSSPPLDGAQEAYESLGAGSELGVVFRY 1008
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A6H5LPZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPZ8_9PHAE) HSP 1 Score: 105 bits (262), Expect = 5.960e-25 Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query: 10 RLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
+LPAGLTDRW KDRRF AAWSLVRELRPS FLTT + L GAQEAYESLGAGSELGVVFRY
Sbjct: 570 KLPAGLTDRWDKDRRFLAAWSLVRELRPSDFLTTSAPPLDGAQEAYESLGAGSELGVVFRY 630
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A7S4D6E6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6E6_HETAK) HSP 1 Score: 85.5 bits (210), Expect = 2.480e-19 Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +PA LTDRW+K RRFAAAW LVRELRPSR +T+R + AQE YE L AG ELGV F Y
Sbjct: 118 QVSNVPAALTDRWTKARRFAAAWELVRELRPSRHITSRVAHVSEAQEMYERLLAGQELGVQFTY 181
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: B7G4N7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G4N7_PHATC) HSP 1 Score: 75.1 bits (183), Expect = 3.060e-14 Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRYE 195
QVS++PA L W+K+RRFA AW LVRE RPSR +T R T L+ AQEAY++L GSE+ + F Y+
Sbjct: 940 QVSKIPAELGSTWTKERRFALAWELVREYRPSRLVTKR-TKLEDAQEAYDALENGSEIAIAFDYD 1003
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A448ZDQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDQ0_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12 Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +PA L+ WSK+RRFA W LV+++RPSR LT + L AQ+AYE+L GSE+ + F Y
Sbjct: 913 QVSEIPANLSRLWSKERRFAYTWDLVKQIRPSRLLT-KIISLDEAQDAYEALDNGSEIAIAFDY 975
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A1E7FW20_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW20_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 7.940e-12 Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +PA ++ WSK+RRFA W LV+++RPSR L+ T L+ AQEAYE+L G+E+ + F Y
Sbjct: 347 QVSEIPASMSRLWSKERRFAFTWELVKQIRPSRLLSKILT-LEHAQEAYEALDNGTEIAIAFDY 409
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A835YW36_9STRA (ADH_zinc_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW36_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.350e-10 Identity = 27/64 (42.19%), Postives = 44/64 (68.75%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +PA L+ RW+K+RRF AAW LV+++RP+ + TR+ QEA+++L G + ++ +Y
Sbjct: 230 QVSHIPAALSARWTKERRFQAAWELVQQIRPAENVATRTIAPGEIQEAFQALETGQHVAIIIKY 293
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A6U3SUV6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SUV6_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10 Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +P L W+K+RRFA W L++ +RPSR L T++ L AQEAYE L G E+ V FRY
Sbjct: 1173 QVSEIPPELRGLWTKERRFALTWELMKLIRPSR-LITKTVTLDQAQEAYELLDRGDEISVSFRY 1235
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: B8BXG1_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXG1_THAPS) HSP 1 Score: 63.9 bits (154), Expect = 2.500e-10 Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRY 192
QVS +P+ L WSK+RRFA W+LV+ +RPSR L ++S L AQ AYE L G E+ + F Y
Sbjct: 337 QVSTIPSSLAGLWSKERRFAMTWALVKAIRPSR-LISKSLTLDDAQLAYELLDGGKEIAICFMY 399
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Match: A0A7S1HEZ9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEZ9_HEMAN) HSP 1 Score: 63.9 bits (154), Expect = 2.580e-10 Identity = 32/65 (49.23%), Postives = 42/65 (64.62%), Query Frame = 1
Query: 1 QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYESLGAGSELGVVFRYE 195
QVS++PA L+ RW KDRRF AW V+ ++PS L T L AQ AYE+L +G+ +G F YE
Sbjct: 490 QVSKIPAHLSGRWDKDRRFLEAWRWVQIIKPSANLGTSVVPLSDAQSAYENLLSGATVGAEFTYE 554 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106601.541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106601.541.1 >prot_H-elongata_contig106601.541.1 ID=prot_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp QVSRLPAGLTDRWSKDRRFAAAWSLVRELRPSRFLTTRSTGLQGAQEAYEback to top mRNA from alignment at H-elongata_contig106601:1793..1990- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106601.541.1 ID=mRNA_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig106601:1793..1990- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106601:1793..1990- >mRNA_H-elongata_contig106601.541.1 ID=mRNA_H-elongata_contig106601.541.1|Name=mRNA_H-elongata_contig106601.541.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig106601:1793..1990- (Himanthalia elongata Himel1 dioecious)back to top |