mRNA_H-elongata_contig194406.5401.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194406.5401.1
Unique NamemRNA_H-elongata_contig194406.5401.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.830e-43
Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 1
Query:    1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            + T  L A +  +VFV+  PG+E+ DK     VM+L+KSLYGL QSP NWF T+D  L  IGF PLKSD CVY+Y+ + V V LTLYVD +L    +   ++ +K KL  RF+M+DMG V  +LGM + RD  +G +TISQ+ YT+ +++R+GM  C P  TP
Sbjct:  680 LSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTP 842          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 9.250e-43
Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 1
Query:    7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            T  L A +  +VFV+  PG+E+ DK     VM+L+KSLYGL QSP NWF T+D  L  IGF PLKSD CVY+Y+ + V V LTLYVD +L    +   ++ +K KL  RF+M+DMG V  +LGM + RD  +GT+TISQ+ Y++ +++R+GM  C P  TP
Sbjct:  571 TAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 1.290e-40
Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 1
Query:    7 TRRLNAVVERDVFVKMAPGYEINDKSEV-PFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            T  L A ++ +VFV+  PG+E+ DK +    VMKL KSLYGL QSP NWF T+D  +  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+GM    P  TP
Sbjct:   33 TAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 194          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.690e-40
Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            T  L A ++ +VFV+  PG+E+ DK     VMKL KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+GM    P  TP
Sbjct: 1428 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 1588          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 5.810e-40
Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 1
Query:    7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            T  L A ++ +VFV+  PG+E+ DK     VMKL KSLYGL QSP NWF T+D  L  IGF  LKSDPCVY+Y+     + LTLYVD +L        ++ +K KL  RF+M+D+G  S +LGM + RD E  T+TISQ+ Y + +++R+G+    P  TP
Sbjct: 1263 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTP 1423          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.750e-39
Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   16 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            LNA+ +RDV+V+ APG    N  +  P V KL +SLYGL QSP  W  T+D +L V G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:  457 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 615          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.010e-38
Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   16 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            LNA+ +RDV+V+ APG    N  +  P V KL +SLYGL QS   W  T+D +L V+G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:  301 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 459          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.450e-38
Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1
Query:   16 LNAVVERDVFVKMAPGYEINDKSEVPF-VMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            LNA  +RDV+V+ APG E  D +     V KL KSLYGL QSP  W   ++  L + G++   SDPCVYI+       IL +YVD IL    +K ++++ K +LM  FEM+DMG V R++G+ V RD+E GT+ ISQ  Y  D++QRYGM+   P  TP
Sbjct:   23 LNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTP 181          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.710e-38
Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 1
Query:    1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            + T  L A +  +V V+  PG+E+N K     VM+L+KSLYGL QSP NWF T+D  L  IGF PL+SD CVY+Y+ + V V LTLYVD +L    +  ++  +KNKL  R +M+DMG V  +LGM + RD  +GT+T SQ+ Y++ +++R+GM    P  TP
Sbjct:  868 LSTAFLCADILENVLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTP 1030          
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.180e-38
Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 1
Query:   16 LNAVVERDVFVKMAPGYEI-----------NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
            LNA+ +RDV+V+ APG              N  +  P V KL +SLYGL QSP     T+D +L V G++  +SDPCVY+Y    + VILT+YVD IL     + L+++ K +L  RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y   +++R+GM+   P  TP
Sbjct:   93 LNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXM1_9PHAE6.830e-4348.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE9.250e-4349.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L5U2_9PHAE1.290e-4046.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5J842_9PHAE1.690e-4047.20Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE5.810e-4046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE92_9PHAE1.750e-3947.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.010e-3847.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCG4_9PHAE1.450e-3845.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL30_9PHAE1.710e-3846.01Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KG29_9PHAE2.180e-3844.38Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194406contigH-elongata_contig194406:4..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue9.2e-25
Seed eggNOG ortholog164328.Phyra85518
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs3QH4V@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size489
Cds size489
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.929222-CDS-H-elongata_contig194406:3..4921622930105.929222-CDS-H-elongata_contig194406:3..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194406 4..492 -
1691679282.3729184-CDS-H-elongata_contig194406:3..4921691679282.3729184-CDS-H-elongata_contig194406:3..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194406 4..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194406.5401.1prot_H-elongata_contig194406.5401.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194406 4..492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194406.5401.1

>prot_H-elongata_contig194406.5401.1 ID=prot_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNW
FGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTL
LNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQ
RYGMKSCYPAYTP
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mRNA from alignment at H-elongata_contig194406:4..492-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194406.5401.1 ID=mRNA_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig194406:4..492- (Himanthalia elongata Himel1 dioecious)
ATGCATACTCGCAGACTCAACGCCGTCGTCGAAAGGGACGTGTTCGTCAA GATGGCACCCGGCTACGAGATCAACGACAAATCAGAAGTTCCTTTTGTCA TGAAGCTCAGGAAGAGCTTGTACGGTCTCCGACAGAGCCCGAAGAACTGG TTCGGCACGATGGACTTGGCGCTCGCCGTTATCGGTTTCCGCCCGCTCAA GTCGGATCCGTGCGTGTACATCTACGAGGACGAGACTGTCTTCGTTATCC TGACGCTCTACGTGGACCACATCTTGTTCCTTAGCGCCAGCAAGACTTTG CTCAACAAGCTCAAGAATAAGCTGATGGGCCGGTTCGAGATGTCCGACAT GGGCAACGTGTCGAGAATCCTCGGCATGAACGTCACCCGCGACCATGAGA AGGGGACTATCACCATTAGTCAGAAGGATTACACGGAGGACGTGGTGCAG CGCTACGGTATGAAAAGCTGCTACCCCGCGTACACCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig194406:4..492-

>mRNA_H-elongata_contig194406.5401.1 ID=mRNA_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig194406:4..492- (Himanthalia elongata Himel1 dioecious)
ATGCATACTCGCAGACTCAACGCCGTCGTCGAAAGGGACGTGTTCGTCAA
GATGGCACCCGGCTACGAGATCAACGACAAATCAGAAGTTCCTTTTGTCA
TGAAGCTCAGGAAGAGCTTGTACGGTCTCCGACAGAGCCCGAAGAACTGG
TTCGGCACGATGGACTTGGCGCTCGCCGTTATCGGTTTCCGCCCGCTCAA
GTCGGATCCGTGCGTGTACATCTACGAGGACGAGACTGTCTTCGTTATCC
TGACGCTCTACGTGGACCACATCTTGTTCCTTAGCGCCAGCAAGACTTTG
CTCAACAAGCTCAAGAATAAGCTGATGGGCCGGTTCGAGATGTCCGACAT
GGGCAACGTGTCGAGAATCCTCGGCATGAACGTCACCCGCGACCATGAGA
AGGGGACTATCACCATTAGTCAGAAGGATTACACGGAGGACGTGGTGCAG
CGCTACGGTATGAAAAGCTGCTACCCCGCGTACACCCCCATGCATACTCG
CAGACTCAACGCCGTCGTCGAAAGGGACGTGTTCGTCAAGATGGCACCCG
GCTACGAGATCAACGACAAATCAGAAGTTCCTTTTGTCATGAAGCTCAGG
AAGAGCTTGTACGGTCTCCGACAGAGCCCGAAGAACTGGTTCGGCACGAT
GGACTTGGCGCTCGCCGTTATCGGTTTCCGCCCGCTCAAGTCGGATCCGT
GCGTGTACATCTACGAGGACGAGACTGTCTTCGTTATCCTGACGCTCTAC
GTGGACCACATCTTGTTCCTTAGCGCCAGCAAGACTTTGCTCAACAAGCT
CAAGAATAAGCTGATGGGCCGGTTCGAGATGTCCGACATGGGCAACGTGT
CGAGAATCCTCGGCATGAACGTCACCCGCGACCATGAGAAGGGGACTATC
ACCATTAGTCAGAAGGATTACACGGAGGACGTGGTGCAGCGCTACGGTAT
GAAAAGCTGCTACCCCGCGTACACCCCC
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