mRNA_H-elongata_contig194406.5401.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 161 bits (407), Expect = 6.830e-43 Identity = 79/163 (48.47%), Postives = 108/163 (66.26%), Query Frame = 1
Query: 1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
+ T L A + +VFV+ PG+E+ DK VM+L+KSLYGL QSP NWF T+D L IGF PLKSD CVY+Y+ + V V LTLYVD +L + ++ +K KL RF+M+DMG V +LGM + RD +G +TISQ+ YT+ +++R+GM C P TP
Sbjct: 680 LSTAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSNAISMIKKKLKQRFKMTDMGEVKLVLGMEIKRDRNQGALTISQEAYTKSILERFGMSECKPTSTP 842
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 160 bits (406), Expect = 9.250e-43 Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 1
Query: 7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
T L A + +VFV+ PG+E+ DK VM+L+KSLYGL QSP NWF T+D L IGF PLKSD CVY+Y+ + V V LTLYVD +L + ++ +K KL RF+M+DMG V +LGM + RD +GT+TISQ+ Y++ +++R+GM C P TP
Sbjct: 571 TAFLYADILENVFVEQPPGFEVKDKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHDDVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTP 731
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 150 bits (380), Expect = 1.290e-40 Identity = 75/162 (46.30%), Postives = 103/162 (63.58%), Query Frame = 1
Query: 7 TRRLNAVVERDVFVKMAPGYEINDKSEV-PFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
T L A ++ +VFV+ PG+E+ DK + VMKL KSLYGL QSP NWF T+D + IGF LKSDPCVY+Y+ + LTLYVD +L ++ +K KL RF+M+D+G S +LGM + RD E T+TISQ+ Y + +++R+GM P TP
Sbjct: 33 TAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 194
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 154 bits (390), Expect = 1.690e-40 Identity = 76/161 (47.20%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
T L A ++ +VFV+ PG+E+ DK VMKL KSLYGL QSP NWF T+D L IGF LKSDPCVY+Y+ + LTLYVD +L ++ +K KL RF+M+D+G S +LGM + RD E T+TISQ+ Y + +++R+GM P TP
Sbjct: 1428 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTP 1588
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 153 bits (386), Expect = 5.810e-40 Identity = 75/161 (46.58%), Postives = 102/161 (63.35%), Query Frame = 1
Query: 7 TRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
T L A ++ +VFV+ PG+E+ DK VMKL KSLYGL QSP NWF T+D L IGF LKSDPCVY+Y+ + LTLYVD +L ++ +K KL RF+M+D+G S +LGM + RD E T+TISQ+ Y + +++R+G+ P TP
Sbjct: 1263 TAFLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTP 1423
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.750e-39 Identity = 76/159 (47.80%), Postives = 107/159 (67.30%), Query Frame = 1
Query: 16 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
LNA+ +RDV+V+ APG N + P V KL +SLYGL QSP W T+D +L V G++ +SDPCVY+Y + VILT+YVD IL + L+++ K +L RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y +++R+GM+ P TP
Sbjct: 457 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 615
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.010e-38 Identity = 75/159 (47.17%), Postives = 107/159 (67.30%), Query Frame = 1
Query: 16 LNAVVERDVFVKMAPGYEI-NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
LNA+ +RDV+V+ APG N + P V KL +SLYGL QS W T+D +L V+G++ +SDPCVY+Y + VILT+YVD IL + L+++ K +L RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y +++R+GM+ P TP
Sbjct: 301 LNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 459
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KCG4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG4_9PHAE) HSP 1 Score: 140 bits (353), Expect = 1.450e-38 Identity = 73/159 (45.91%), Postives = 99/159 (62.26%), Query Frame = 1
Query: 16 LNAVVERDVFVKMAPGYEINDKSEVPF-VMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
LNA +RDV+V+ APG E D + V KL KSLYGL QSP W ++ L + G++ SDPCVYI+ IL +YVD IL +K ++++ K +LM FEM+DMG V R++G+ V RD+E GT+ ISQ Y D++QRYGM+ P TP
Sbjct: 23 LNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTHSDPCVYIFVSGDELTILAIYVDDILITEGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTP 181
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.710e-38 Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 1 MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
+ T L A + +V V+ PG+E+N K VM+L+KSLYGL QSP NWF T+D L IGF PL+SD CVY+Y+ + V V LTLYVD +L + ++ +KNKL R +M+DMG V +LGM + RD +GT+T SQ+ Y++ +++R+GM P TP
Sbjct: 868 LSTAFLCADILENVLVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTP 1030
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE) HSP 1 Score: 142 bits (358), Expect = 2.180e-38 Identity = 75/169 (44.38%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 16 LNAVVERDVFVKMAPGYEI-----------NDKSEVPFVMKLRKSLYGLRQSPKNWFGTMDLALAVIGFRPLKSDPCVYIYEDETVFVILTLYVDHILFLSASKTLLNKLKNKLMGRFEMSDMGNVSRILGMNVTRDHEKGTITISQKDYTEDVVQRYGMKSCYPAYTP 489
LNA+ +RDV+V+ APG N + P V KL +SLYGL QSP T+D +L V G++ +SDPCVY+Y + VILT+YVD IL + L+++ K +L RFEM+DMG V RILG++V RD+E+GT+ ISQ+ Y +++R+GM+ P TP
Sbjct: 93 LNALCDRDVYVRPAPGTXXXXXXXXXXSAKNSATGEPMVYKLERSLYGLSQSPALLNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTP 261 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194406.5401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig194406.5401.1 >prot_H-elongata_contig194406.5401.1 ID=prot_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp MHTRRLNAVVERDVFVKMAPGYEINDKSEVPFVMKLRKSLYGLRQSPKNWback to top mRNA from alignment at H-elongata_contig194406:4..492- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig194406.5401.1 ID=mRNA_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig194406:4..492- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig194406:4..492- >mRNA_H-elongata_contig194406.5401.1 ID=mRNA_H-elongata_contig194406.5401.1|Name=mRNA_H-elongata_contig194406.5401.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig194406:4..492- (Himanthalia elongata Himel1 dioecious)back to top |