mRNA_H-elongata_contig194122.5393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194122.5393.1
Unique NamemRNA_H-elongata_contig194122.5393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A6H5KM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM40_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.420e-22
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 159
            ++S E KLV A AGLYSSFLYWGYLQEKITG DYVSP DE+VTGRWHFSFVLN
Sbjct:    2 VVSSEVKLVSAAAGLYSSFLYWGYLQEKITGVDYVSPQDENVTGRWHFSFVLN 54
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BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: D7FT27_ECTSI (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT27_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.610e-21
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 159
            ++S E KLV A AGLYSSFLYWGYLQEKITG DYVSP D +VTGRWHFSFVLN
Sbjct:    2 VVSSEVKLVSAAAGLYSSFLYWGYLQEKITGVDYVSPHDANVTGRWHFSFVLN 54
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BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A7S3YET9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET9_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 8.460e-9
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    4 LSPEAKLVGATAGLYSSFLYWGYLQEKITGKD-YVSPLDESVTGRWHFSFVLN 159
            L  E KLV A  G+Y SFLYWGYLQEKIT KD YV+   + + G W FS  +N
Sbjct:   11 LPSELKLVVAALGIYGSFLYWGYLQEKITMKDAYVTA--DGIKGTWDFSSFMN 61
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BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A835ZGA1_9STRA (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-8
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 159
            M+SP  KL  A +G+Y SFLYWGYLQE+IT   Y +  D S+ G+W + F LN
Sbjct:    1 MVSPRLKLTFAVSGIYGSFLYWGYLQERITSVKYEAA-DGSI-GKWDYPFFLN 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KM40_9PHAE2.420e-2283.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT27_ECTSI2.610e-2181.13UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A7S3YET9_HETAK8.460e-956.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZGA1_9STRA2.140e-852.83UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194122contigH-elongata_contig194122:126..284 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.7
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D7FT27
Preferred nameHUT1
KEGG koko:K15275
KEGG TC2.A.7.11.1,2.A.7.11.4
GOsGO:0000139,GO:0003674,GO:0005215,GO:0005338,GO:0005459,GO:0005460,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0006810,GO:0006811,GO:0006820,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008509,GO:0008514,GO:0009553,GO:0009555,GO:0009987,GO:0010033,GO:0012505,GO:0015075,GO:0015165,GO:0015711,GO:0015780,GO:0015786,GO:0015931,GO:0015932,GO:0016020,GO:0016021,GO:0022857,GO:0023052,GO:0030173,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031228,GO:0031300,GO:0031301,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0072334,GO:0090481,GO:0098588,GO:0098656,GO:0098791,GO:0098827,GO:1901264,GO:1901505
EggNOG free text desc.UDP-galactose transmembrane transporter activity
EggNOG OGsCOG0697@1,KOG1581@2759
Ec32 ortholog descriptionUDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter
Ec32 orthologEc-04_002590.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.2668855-CDS-H-elongata_contig194122:125..2841622930105.2668855-CDS-H-elongata_contig194122:125..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194122 126..284 +
1691679282.0686932-CDS-H-elongata_contig194122:125..2841691679282.0686932-CDS-H-elongata_contig194122:125..284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194122 126..284 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194122.5393.1prot_H-elongata_contig194122.5393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194122 126..284 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194122.5393.1

>prot_H-elongata_contig194122.5393.1 ID=prot_H-elongata_contig194122.5393.1|Name=mRNA_H-elongata_contig194122.5393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSF
VLN
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mRNA from alignment at H-elongata_contig194122:126..284+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194122.5393.1 ID=mRNA_H-elongata_contig194122.5393.1|Name=mRNA_H-elongata_contig194122.5393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig194122:126..284+ (Himanthalia elongata Himel1 dioecious)
ATGTTATCGCCAGAGGCCAAACTGGTCGGGGCGACGGCCGGGCTTTACTC
GTCATTTCTGTACTGGGGATATCTCCAGGAAAAGATAACGGGCAAGGATT
ACGTGTCACCCCTGGATGAGAGCGTCACCGGCCGATGGCACTTCTCTTTC
GTCCTCAAT
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Coding sequence (CDS) from alignment at H-elongata_contig194122:126..284+

>mRNA_H-elongata_contig194122.5393.1 ID=mRNA_H-elongata_contig194122.5393.1|Name=mRNA_H-elongata_contig194122.5393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig194122:126..284+ (Himanthalia elongata Himel1 dioecious)
ATGTTATCGCCAGAGGCCAAACTGGTCGGGGCGACGGCCGGGCTTTACTC
GTCATTTCTGTACTGGGGATATCTCCAGGAAAAGATAACGGGCAAGGATT
ACGTGTCACCCCTGGATGAGAGCGTCACCGGCCGATGGCACTTCTCTTTC
GTCCTCAATATGTTATCGCCAGAGGCCAAACTGGTCGGGGCGACGGCCGG
GCTTTACTCGTCATTTCTGTACTGGGGATATCTCCAGGAAAAGATAACGG
GCAAGGATTACGTGTCACCCCTGGATGAGAGCGTCACCGGCCGATGGCAC
TTCTCTTTCGTCCTCAAT
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