prot_H-elongata_contig194122.5393.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig194122.5393.1
Unique Nameprot_H-elongata_contig194122.5393.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length53
Homology
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A6H5KM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM40_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 2.420e-22
Identity = 44/53 (83.02%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 53
            ++S E KLV A AGLYSSFLYWGYLQEKITG DYVSP DE+VTGRWHFSFVLN
Sbjct:    2 VVSSEVKLVSAAAGLYSSFLYWGYLQEKITGVDYVSPQDENVTGRWHFSFVLN 54          
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: D7FT27_ECTSI (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT27_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.610e-21
Identity = 43/53 (81.13%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 53
            ++S E KLV A AGLYSSFLYWGYLQEKITG DYVSP D +VTGRWHFSFVLN
Sbjct:    2 VVSSEVKLVSAAAGLYSSFLYWGYLQEKITGVDYVSPHDANVTGRWHFSFVLN 54          
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A7S3YET9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET9_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 8.460e-9
Identity = 30/53 (56.60%), Postives = 35/53 (66.04%), Query Frame = 0
Query:    2 LSPEAKLVGATAGLYSSFLYWGYLQEKITGKD-YVSPLDESVTGRWHFSFVLN 53
            L  E KLV A  G+Y SFLYWGYLQEKIT KD YV+   + + G W FS  +N
Sbjct:   11 LPSELKLVVAALGIYGSFLYWGYLQEKITMKDAYVTA--DGIKGTWDFSSFMN 61          
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Match: A0A835ZGA1_9STRA (UDP-Glc/Gal endoplasmic reticulum nucleotide sugar transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGA1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.140e-8
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSFVLN 53
            M+SP  KL  A +G+Y SFLYWGYLQE+IT   Y +  D S+ G+W + F LN
Sbjct:    1 MVSPRLKLTFAVSGIYGSFLYWGYLQERITSVKYEAA-DGSI-GKWDYPFFLN 51          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194122.5393.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KM40_9PHAE2.420e-2283.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT27_ECTSI2.610e-2181.13UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
A0A7S3YET9_HETAK8.460e-956.60Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835ZGA1_9STRA2.140e-852.83UDP-Glc/Gal endoplasmic reticulum nucleotide sugar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..24
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 25..53
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194122contigH-elongata_contig194122:126..284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194122.5393.1mRNA_H-elongata_contig194122.5393.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig194122 126..284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig194122.5393.1 ID=prot_H-elongata_contig194122.5393.1|Name=mRNA_H-elongata_contig194122.5393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MLSPEAKLVGATAGLYSSFLYWGYLQEKITGKDYVSPLDESVTGRWHFSF
VLN
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