mRNA_H-elongata_contig106547.539.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig106547.539.1
Unique NamemRNA_H-elongata_contig106547.539.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.780e-39
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++  FVQLAFQ
Sbjct:  113 AVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ 190          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.140e-37
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1
Query:    1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++  FVQLAFQ
Sbjct:  113 AVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ 190          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2D4BSB4_PYTIN (COP9 signalosome complex subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSB4_PYTIN)

HSP 1 Score: 87.8 bits (216), Expect = 5.890e-19
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGS--KELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            V+P +E+LGWYTVG++A + DL I R +M+FN++PLFLLM+P P   S  K+LP+ + ESE H LDG   +IFV+ +++
Sbjct:  114 VFPGFELLGWYTVGSKAKQSDLTIHRSIMEFNESPLFLLMDPTPQGMSTKKKLPISLFESELHVLDGSPTMIFVKTSYK 192          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.050e-18
Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   19 EILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            ++LGWY+VG E  E+D+ I R+M K+N++P FLLMNPNP + +K+LP+ ++ESE H ++    ++FV   FQ
Sbjct:  116 DLLGWYSVGLEVVEMDMAIHREMTKYNESPFFLLMNPNPDEEAKDLPISLYESEMHVINDTPTMLFVTCEFQ 187          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A8K1C296_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C296_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 1.720e-17
Identity = 38/80 (47.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQG---SKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            V+P +E+LGWYTVG++A + DL I R +M+FN++PLF+L++P P QG    K+LP+ ++ESE H L+G   +IFV+  ++
Sbjct:  120 VFPGFELLGWYTVGSKAQQSDLAIHRAVMEFNESPLFMLLDPTP-QGPNTKKKLPISLYESELHVLNGAPTMIFVKTQYK 198          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2G5F758_AQUCA (COP9 signalosome complex subunit 6 n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F758_AQUCA)

HSP 1 Score: 83.6 bits (205), Expect = 2.150e-17
Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAF 231
            V+P + ILGWY+ G++A ELD++I R +M  N++P+++L+NP      K+LPV I+ESE H +DG  +LIFV+ ++
Sbjct:  103 VFPNFYILGWYSTGSDAQELDMQIHRALMDINESPVYVLLNPAINHAHKDLPVTIYESELHVIDGIPQLIFVRSSY 178          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A7N0TEN1_KALFE (COP9 signalosome complex subunit 6 n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TEN1_KALFE)

HSP 1 Score: 82.4 bits (202), Expect = 4.940e-17
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQ 222
            V+P + ILGWY+ GT+A ELD+ I R +M  N++P+++L+NP      K+LPV I ESE H +DG  +LIFV+
Sbjct:   93 VFPNFYILGWYSTGTDAHELDMNIHRALMDINESPVYVLLNPLINHAQKDLPVTIFESELHVIDGIPQLIFVR 165          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A397ITZ5_9GLOM (COP9 signalosome complex subunit 6 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397ITZ5_9GLOM)

HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            V+P ++ LGWYT+G   TE D+ I +QMMKFN++PLFL MNP     SK LP+ ++ES    +DG++  +F++  ++
Sbjct:  113 VFPKFDFLGWYTMGPYPTEADIEIHKQMMKFNESPLFLQMNPFEMVTSKNLPITVYESIIDIIDGQAHTLFIKSQYK 189          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A0C9RG54_9SPER (COP9 signalosome complex subunit 6 n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RG54_9SPER)

HSP 1 Score: 80.5 bits (197), Expect = 2.370e-16
Identity = 35/78 (44.87%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNP--NPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAF 231
            V+P Y+ILGWY+ G++A E D++I + +M  N++P+ +L+NP  NP+Q  K+LP+ I+ESE H ++G   LIFV+ ++
Sbjct:   85 VFPQYDILGWYSTGSDAQESDMQIHKSLMDINESPVCVLLNPVLNPSQ--KDLPITIYESELHVIEGVPSLIFVRSSY 160          
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2R5GVH1_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVH1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-16
Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
            AV+P YEILGWYTVG + ++ D+ I R M  FN++PL LL++PN +  SKELP+ + E+    ++    +IFV + FQ
Sbjct:   88 AVFPQYEILGWYTVGGDVSQEDMAIHRAMSAFNESPLLLLVDPNISPDSKELPIKVVEAVMQVIEEVPTMIFVDMEFQ 165          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY7_9PHAE8.780e-3983.33JAB_MPN domain-containing protein n=1 Tax=Ectocarp... [more]
D8LBH4_ECTSI2.140e-3783.33COP9 signalosome complex subunit 6 n=1 Tax=Ectocar... [more]
A0A2D4BSB4_PYTIN5.890e-1950.63COP9 signalosome complex subunit 6 n=1 Tax=Pythium... [more]
A0A7S2BCI8_9STRA2.050e-1847.22COP9 signalosome complex subunit 6 n=1 Tax=Florenc... [more]
A0A8K1C296_PYTOL1.720e-1747.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2G5F758_AQUCA2.150e-1746.05COP9 signalosome complex subunit 6 n=2 Tax=Thalict... [more]
A0A7N0TEN1_KALFE4.940e-1749.32COP9 signalosome complex subunit 6 n=1 Tax=Kalanch... [more]
A0A397ITZ5_9GLOM1.230e-1644.16COP9 signalosome complex subunit 6 n=1 Tax=Diversi... [more]
A0A0C9RG54_9SPER2.370e-1644.87COP9 signalosome complex subunit 6 n=1 Tax=Wollemi... [more]
A0A2R5GVH1_9STRA2.530e-1646.15COP9 signalosome complex subunit 6 n=1 Tax=Hondaea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig106547contigH-elongata_contig106547:278..688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue4.5e-27
Seed eggNOG ortholog2880.D8LBH4
Preferred nameCOPS6
KEGG rclassRC00049
KEGG koko:K01194,ko:K01410,ko:K12179
KEGG ReactionR00010
KEGG Pathwayko00500,ko01100,map00500,map01100
GOsGO:0000003,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0008150,GO:0008152,GO:0008180,GO:0009056,GO:0009057,GO:0009653,GO:0009888,GO:0009987,GO:0010387,GO:0016043,GO:0016333,GO:0019538,GO:0019827,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030163,GO:0030582,GO:0030584,GO:0030718,GO:0031647,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0036099,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046483,GO:0046983,GO:0048138,GO:0048140,GO:0048232,GO:0048468,GO:0048608,GO:0048609,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050821,GO:0050896,GO:0051276,GO:0051603,GO:0051704,GO:0051716,GO:0060429,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0090304,GO:0098727,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG1310@1,KOG3050@2759
EC3.2.1.28,3.4.24.59
COG Functional cat.V
CAZyGH37
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko01002,ko03029,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size234
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig106547.539.1prot_H-elongata_contig106547.539.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig106547 278..676 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.2287683-CDS-H-elongata_contig106547:277..4271622929596.2287683-CDS-H-elongata_contig106547:277..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106547 278..427 -
1691679084.333303-CDS-H-elongata_contig106547:277..4271691679084.333303-CDS-H-elongata_contig106547:277..427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106547 278..427 -
1622929596.241605-CDS-H-elongata_contig106547:604..6761622929596.241605-CDS-H-elongata_contig106547:604..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106547 605..676 -
1691679084.3562334-CDS-H-elongata_contig106547:604..6761691679084.3562334-CDS-H-elongata_contig106547:604..676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig106547 605..676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929596.251858-UTR-H-elongata_contig106547:676..6881622929596.251858-UTR-H-elongata_contig106547:676..688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106547 677..688 -
1691679084.3655975-UTR-H-elongata_contig106547:676..6881691679084.3655975-UTR-H-elongata_contig106547:676..688Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig106547 677..688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig106547.539.1

>prot_H-elongata_contig106547.539.1 ID=prot_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPV
LIHESEAHTLDGRSKLIFVQLAFQ
back to top

mRNA from alignment at H-elongata_contig106547:278..688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig106547.539.1 ID=mRNA_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig106547:278..688- (Himanthalia elongata Himel1 dioecious)
GCGGTGTACCCAATGTACGAGATTCTTGGGTGGTATACGGTCGGCACGGA GGCCACAGAGCTGGATCTGCGCATCCAAAGACAAGTGCGCCGCTATTTTT TTTGGCTCGTGATGATGCTGGCCGCAAATATTTTCCATCATTCCCCAGTT CCGCGTTAGCCAACCATTTGCGTTGCTCTTTTAAACACCATTCACGAACG AAGTAATCTCGAAGGTTGAACGGGTCATCGCTTCTCGTACTTCTCTCGCC CATGTTTACAGATGATGAAGTTCAATCAAGCCCCGCTGTTTCTGCTCATG AACCCTAACCCGGCGCAAGGCTCGAAAGAGCTTCCCGTCTTGATCCATGA GTCGGAAGCGCACACGCTGGACGGCAGGTCGAAGCTGATTTTTGTACAAC TGGCCTTCCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig106547:278..688-

>mRNA_H-elongata_contig106547.539.1 ID=mRNA_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig106547:278..688- (Himanthalia elongata Himel1 dioecious)
ATGTACGAGATTCTTGGGTGGTATACGGTCGGCACGGAGGCCACAGAGCT
GGATCTGCGCATCCAAAGACAAATGTACGAGATTCTTGGGTGGTATACGG
TCGGCACGGAGGCCACAGAGCTGGATCTGCGCATCCAAAGACAAATGATG
AAGTTCAATCAAGCCCCGCTGTTTCTGCTCATGAACCCTAACCCGGCGCA
AGGCTCGAAAGAGCTTCCCGTCTTGATCCATGAGTCGGAAGCGCACACGC
TGGACGGCAGGTCGAAGCTGATTTTTGTACAACTGGCCTTCCAGATGATG
AAGTTCAATCAAGCCCCGCTGTTTCTGCTCATGAACCCTAACCCGGCGCA
AGGCTCGAAAGAGCTTCCCGTCTTGATCCATGAGTCGGAAGCGCACACGC
TGGACGGCAGGTCGAAGCTGATTTTTGTACAACTGGCCTTCCAG
back to top