mRNA_H-elongata_contig106547.539.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A6H5KLY7_9PHAE (JAB_MPN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY7_9PHAE) HSP 1 Score: 135 bits (341), Expect = 8.780e-39 Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++ FVQLAFQ
Sbjct: 113 AVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ 190
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: D8LBH4_ECTSI (COP9 signalosome complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH4_ECTSI) HSP 1 Score: 135 bits (341), Expect = 2.140e-37 Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1
Query: 1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
AVYPMYEILGWYTVGTE TELDL IQRQM KFN +PLFLLMNP+PAQGSKELPVLIHESE+H LDG ++ FVQLAFQ
Sbjct: 113 AVYPMYEILGWYTVGTEVTELDLGIQRQMTKFNSSPLFLLMNPSPAQGSKELPVLIHESESHMLDGVAQSTFVQLAFQ 190
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2D4BSB4_PYTIN (COP9 signalosome complex subunit 6 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSB4_PYTIN) HSP 1 Score: 87.8 bits (216), Expect = 5.890e-19 Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGS--KELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
V+P +E+LGWYTVG++A + DL I R +M+FN++PLFLLM+P P S K+LP+ + ESE H LDG +IFV+ +++
Sbjct: 114 VFPGFELLGWYTVGSKAKQSDLTIHRSIMEFNESPLFLLMDPTPQGMSTKKKLPISLFESELHVLDGSPTMIFVKTSYK 192
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A7S2BCI8_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCI8_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.050e-18 Identity = 34/72 (47.22%), Postives = 53/72 (73.61%), Query Frame = 1
Query: 19 EILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
++LGWY+VG E E+D+ I R+M K+N++P FLLMNPNP + +K+LP+ ++ESE H ++ ++FV FQ
Sbjct: 116 DLLGWYSVGLEVVEMDMAIHREMTKYNESPFFLLMNPNPDEEAKDLPISLYESEMHVINDTPTMLFVTCEFQ 187
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A8K1C296_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C296_PYTOL) HSP 1 Score: 84.0 bits (206), Expect = 1.720e-17 Identity = 38/80 (47.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQG---SKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
V+P +E+LGWYTVG++A + DL I R +M+FN++PLF+L++P P QG K+LP+ ++ESE H L+G +IFV+ ++
Sbjct: 120 VFPGFELLGWYTVGSKAQQSDLAIHRAVMEFNESPLFMLLDPTP-QGPNTKKKLPISLYESELHVLNGAPTMIFVKTQYK 198
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2G5F758_AQUCA (COP9 signalosome complex subunit 6 n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5F758_AQUCA) HSP 1 Score: 83.6 bits (205), Expect = 2.150e-17 Identity = 35/76 (46.05%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAF 231
V+P + ILGWY+ G++A ELD++I R +M N++P+++L+NP K+LPV I+ESE H +DG +LIFV+ ++
Sbjct: 103 VFPNFYILGWYSTGSDAQELDMQIHRALMDINESPVYVLLNPAINHAHKDLPVTIYESELHVIDGIPQLIFVRSSY 178
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A7N0TEN1_KALFE (COP9 signalosome complex subunit 6 n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0TEN1_KALFE) HSP 1 Score: 82.4 bits (202), Expect = 4.940e-17 Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQ 222
V+P + ILGWY+ GT+A ELD+ I R +M N++P+++L+NP K+LPV I ESE H +DG +LIFV+
Sbjct: 93 VFPNFYILGWYSTGTDAHELDMNIHRALMDINESPVYVLLNPLINHAQKDLPVTIFESELHVIDGIPQLIFVR 165
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A397ITZ5_9GLOM (COP9 signalosome complex subunit 6 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397ITZ5_9GLOM) HSP 1 Score: 81.6 bits (200), Expect = 1.230e-16 Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
V+P ++ LGWYT+G TE D+ I +QMMKFN++PLFL MNP SK LP+ ++ES +DG++ +F++ ++
Sbjct: 113 VFPKFDFLGWYTMGPYPTEADIEIHKQMMKFNESPLFLQMNPFEMVTSKNLPITVYESIIDIIDGQAHTLFIKSQYK 189
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A0C9RG54_9SPER (COP9 signalosome complex subunit 6 n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9RG54_9SPER) HSP 1 Score: 80.5 bits (197), Expect = 2.370e-16 Identity = 35/78 (44.87%), Postives = 58/78 (74.36%), Query Frame = 1
Query: 4 VYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNP--NPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAF 231
V+P Y+ILGWY+ G++A E D++I + +M N++P+ +L+NP NP+Q K+LP+ I+ESE H ++G LIFV+ ++
Sbjct: 85 VFPQYDILGWYSTGSDAQESDMQIHKSLMDINESPVCVLLNPVLNPSQ--KDLPITIYESELHVIEGVPSLIFVRSSY 160
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Match: A0A2R5GVH1_9STRA (COP9 signalosome complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVH1_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.530e-16 Identity = 36/78 (46.15%), Postives = 53/78 (67.95%), Query Frame = 1
Query: 1 AVYPMYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVLIHESEAHTLDGRSKLIFVQLAFQ 234
AV+P YEILGWYTVG + ++ D+ I R M FN++PL LL++PN + SKELP+ + E+ ++ +IFV + FQ
Sbjct: 88 AVFPQYEILGWYTVGGDVSQEDMAIHRAMSAFNESPLLLLVDPNISPDSKELPIKVVEAVMQVIEEVPTMIFVDMEFQ 165 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig106547.539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig106547.539.1 >prot_H-elongata_contig106547.539.1 ID=prot_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp MYEILGWYTVGTEATELDLRIQRQMMKFNQAPLFLLMNPNPAQGSKELPVback to top mRNA from alignment at H-elongata_contig106547:278..688- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig106547.539.1 ID=mRNA_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig106547:278..688- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig106547:278..688- >mRNA_H-elongata_contig106547.539.1 ID=mRNA_H-elongata_contig106547.539.1|Name=mRNA_H-elongata_contig106547.539.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig106547:278..688- (Himanthalia elongata Himel1 dioecious)back to top |