mRNA_H-elongata_contig19385.5382.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19385.5382.1
Unique NamemRNA_H-elongata_contig19385.5382.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.360e-23
Identity = 39/60 (65.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:  166 RVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDLQV 345
            ++RR  NQALVDVF++LGG++W ++SGWLT GT++++WHG+TV AG LVSLNL+SNDL+V
Sbjct:   12 QIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLEV 71
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 2.170e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  172 RRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVG-AGKLVSLNLISNDLQ 342
            RR  NQ L D++  LGG+ W  R GWL  G+++R WHGLT+  +G LVS+NLISNDL+
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A7X4BD87_9BACT (Intimin n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BD87_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.960e-5
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  190 ALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTV-GAGKLVSLNLISNDL 339
            ALV +F S GG  W D + WLT GT +  W+G+T  GAG++++L L SN+L
Sbjct:  345 ALVALFGSTGGPDWADNTNWLT-GTPVGHWYGVTTDGAGRVIALELESNNL 394
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A3N9NSK9_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3N9NSK9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 4.970e-5
Identity = 21/51 (41.18%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:  190 ALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDLQ 342
            ALV+++ S  G+QW +   WLT+   +  WHG+TVG G++V++ L +N+L+
Sbjct:  455 ALVELYYSTNGSQWFNAENWLTT-EPLSHWHGITVGHGRVVAIQLQNNNLE 504
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: UPI00054DABB4 (leucine-rich repeat domain-containing protein n=2 Tax=Aquimarina TaxID=290174 RepID=UPI00054DABB4)

HSP 1 Score: 51.2 bits (121), Expect = 5.060e-5
Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  187 QALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDL 339
            QAL+D+++S  G  W + S WL+    +  W+G+TV  GK++++ L+SN+L
Sbjct:  355 QALIDLYNSTNGANWTNNSNWLSVTVPVCDWYGVTVIDGKVIAVELVSNNL 405
[Close]
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A401FQW3_9DELT (Uncharacterized protein n=2 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FQW3_9DELT)

HSP 1 Score: 50.8 bits (120), Expect = 6.670e-5
Identity = 24/78 (30.77%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:  106 LTSYAKRNQTVAMETQDQILRVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDL 339
            +++ ++ N+       D I  + +   +ALV +++S  G+ W D+SGWLT  T    W+G+TV  G + +++L +N+L
Sbjct:  441 ISNLSRTNRPCETSICDSITDIPKTECEALVALYNSTDGDNWTDKSGWLTD-TVAGNWNGVTVENGHVTNISLFNNNL 517
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FV03_ECTSI4.360e-2365.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI2.170e-1255.17Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A7X4BD87_9BACT1.960e-549.02Intimin n=2 Tax=Gemmatimonadetes bacterium TaxID=2... [more]
A0A3N9NSK9_9BACT4.970e-541.18T9SS C-terminal target domain-containing protein n... [more]
UPI00054DABB45.060e-539.22leucine-rich repeat domain-containing protein n=2 ... [more]
A0A401FQW3_9DELT6.670e-530.77Uncharacterized protein n=2 Tax=Desulfonema ishimo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19385contigH-elongata_contig19385:1104..1877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-13_002040.1
Exons2
Model size345
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19385.5382.1prot_H-elongata_contig19385.5382.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19385 1104..1736 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.9697251-CDS-H-elongata_contig19385:1103..12881622930103.9697251-CDS-H-elongata_contig19385:1103..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19385 1104..1288 -
1691679281.5240357-CDS-H-elongata_contig19385:1103..12881691679281.5240357-CDS-H-elongata_contig19385:1103..1288Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19385 1104..1288 -
1622930103.9813483-CDS-H-elongata_contig19385:1717..17361622930103.9813483-CDS-H-elongata_contig19385:1717..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19385 1718..1736 -
1691679281.5354958-CDS-H-elongata_contig19385:1717..17361691679281.5354958-CDS-H-elongata_contig19385:1717..1736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19385 1718..1736 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.99968-UTR-H-elongata_contig19385:1736..18771622930103.99968-UTR-H-elongata_contig19385:1736..1877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19385 1737..1877 -
1691679281.5515482-UTR-H-elongata_contig19385:1736..18771691679281.5515482-UTR-H-elongata_contig19385:1736..1877Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19385 1737..1877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19385.5382.1

>prot_H-elongata_contig19385.5382.1 ID=prot_H-elongata_contig19385.5382.1|Name=mRNA_H-elongata_contig19385.5382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
METQDQILRVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLT
VGAGKLVSLNLISNDLQV
back to top

mRNA from alignment at H-elongata_contig19385:1104..1877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19385.5382.1 ID=mRNA_H-elongata_contig19385.5382.1|Name=mRNA_H-elongata_contig19385.5382.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig19385:1104..1877- (Himanthalia elongata Himel1 dioecious)
CCTGAATACTGAATACCTCATGCAAAATCTGTTGCTTTCCGCAGAATAAT
TCCAACTCTTCTAGCCGAAATCCTCTGAAATCTGGGGCAATTTACCTTCC
GAAGACTCACTTCGTATGCCAAACGCAATCAGACGGTCGCGATGGAGACG
CAAGACCAGAGTGAGACTGAGTATTCGATGCTGTCGTACCAGTATTAGTT
GTTGGCAGTTAAGTAGAAAGGTGGCGTCGAGTCCTTGGCCTGTTCATTCC
TGAATTTTCAATCTTTCAATCTGTGAAGAAAAAGCTCGACTCTACGTACT
TCTCTTCAGCAGACCACGAACCAAATTACCACCCGCATTGTTGCGTTGTT
GTTGGGTATACATGGAGCTCTATCGGTTAATTCGAGGGACACCGCAGAGC
TTTCTCTTGTTTCTCTACGTGTACGAGGAAGACTAAAACAGGCTGTCATC
ATAGAGAGCTTACTACCACCACAATATTGAGAATTGTGATGACATGCTCT
CTTACATGTCTTTCATCTTTCTCTCATCTGCCCTCCTGTATCCCTTCCCC
GCACTCATGAACTGTTGATACTATTGATAATATAAATAGTACTGCGGGTC
CGGCGATTTGTTAACCAAGCCTTGGTTGATGTTTTCAGCTCGCTAGGCGG
GAATCAGTGGTGCGACAGGAGCGGCTGGCTCACGTCAGGAACGGAAATCA
GGAGGTGGCACGGTCTAACAGTGGGTGCCGGAAAGCTTGTATCACTCAAC
CTGATCAGCAATGACTTGCAGGTA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19385:1104..1877-

>mRNA_H-elongata_contig19385.5382.1 ID=mRNA_H-elongata_contig19385.5382.1|Name=mRNA_H-elongata_contig19385.5382.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig19385:1104..1877- (Himanthalia elongata Himel1 dioecious)
ATGGAGACGCAAGACCAGAATGGAGACGCAAGACCAGATACTGCGGGTCC
GGCGATTTGTTAACCAAGCCTTGGTTGATGTTTTCAGCTCGCTAGGCGGG
AATCAGTGGTGCGACAGGAGCGGCTGGCTCACGTCAGGAACGGAAATCAG
GAGGTGGCACGGTCTAACAGTGGGTGCCGGAAAGCTTGTATCACTCAACC
TGATCAGCAATGACTTGCAGGTATACTGCGGGTCCGGCGATTTGTTAACC
AAGCCTTGGTTGATGTTTTCAGCTCGCTAGGCGGGAATCAGTGGTGCGAC
AGGAGCGGCTGGCTCACGTCAGGAACGGAAATCAGGAGGTGGCACGGTCT
AACAGTGGGTGCCGGAAAGCTTGTATCACTCAACCTGATCAGCAATGACT
TGCAGGTA
back to top