prot_H-elongata_contig19385.5382.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19385.5382.1
Unique Nameprot_H-elongata_contig19385.5382.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length68
Homology
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.040e-24
Identity = 39/60 (65.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    9 RVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDLQV 68
            ++RR  NQALVDVF++LGG++W ++SGWLT GT++++WHG+TV AG LVSLNL+SNDL+V
Sbjct:   12 QIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLEV 71          
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.800e-13
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0
Query:   11 RRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVG-AGKLVSLNLISNDLQ 67
            RR  NQ L D++  LGG+ W  R GWL  G+++R WHGLT+  +G LVS+NLISNDL+
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90          
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A7X4BD87_9BACT (Intimin n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7X4BD87_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 3.410e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   17 ALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTV-GAGKLVSLNLISNDL 66
            ALV +F S GG  W D + WLT GT +  W+G+T  GAG++++L L SN+L
Sbjct:  345 ALVALFGSTGGPDWADNTNWLT-GTPVGHWYGVTTDGAGRVIALELESNNL 394          
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A3N9NSK9_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3N9NSK9_9BACT)

HSP 1 Score: 51.2 bits (121), Expect = 8.730e-6
Identity = 21/51 (41.18%), Postives = 36/51 (70.59%), Query Frame = 0
Query:   17 ALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDLQ 67
            ALV+++ S  G+QW +   WLT+   +  WHG+TVG G++V++ L +N+L+
Sbjct:  455 ALVELYYSTNGSQWFNAENWLTT-EPLSHWHGITVGHGRVVAIQLQNNNLE 504          
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: UPI00054DABB4 (leucine-rich repeat domain-containing protein n=2 Tax=Aquimarina TaxID=290174 RepID=UPI00054DABB4)

HSP 1 Score: 51.2 bits (121), Expect = 8.790e-6
Identity = 20/51 (39.22%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   16 QALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDL 66
            QAL+D+++S  G  W + S WL+    +  W+G+TV  GK++++ L+SN+L
Sbjct:  355 QALIDLYNSTNGANWTNNSNWLSVTVPVCDWYGVTVIDGKVIAVELVSNNL 405          
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Match: A0A401FQW3_9DELT (Uncharacterized protein n=2 Tax=Desulfonema ishimotonii TaxID=45657 RepID=A0A401FQW3_9DELT)

HSP 1 Score: 49.7 bits (117), Expect = 3.040e-5
Identity = 23/62 (37.10%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    5 DQILRVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLTVGAGKLVSLNLISNDL 66
            D I  + +   +ALV +++S  G+ W D+SGWLT  T    W+G+TV  G + +++L +N+L
Sbjct:  457 DSITDIPKTECEALVALYNSTDGDNWTDKSGWLTD-TVAGNWNGVTVENGHVTNISLFNNNL 517          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19385.5382.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FV03_ECTSI7.040e-2465.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI3.800e-1355.17Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A7X4BD87_9BACT3.410e-649.02Intimin n=2 Tax=Gemmatimonadetes bacterium TaxID=2... [more]
A0A3N9NSK9_9BACT8.730e-641.18T9SS C-terminal target domain-containing protein n... [more]
UPI00054DABB48.790e-639.22leucine-rich repeat domain-containing protein n=2 ... [more]
A0A401FQW3_9DELT3.040e-537.10Uncharacterized protein n=2 Tax=Desulfonema ishimo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19385contigH-elongata_contig19385:1104..1736 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19385.5382.1mRNA_H-elongata_contig19385.5382.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19385 1104..1877 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19385.5382.1 ID=prot_H-elongata_contig19385.5382.1|Name=mRNA_H-elongata_contig19385.5382.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
METQDQILRVRRFVNQALVDVFSSLGGNQWCDRSGWLTSGTEIRRWHGLT
VGAGKLVSLNLISNDLQV
back to top