mRNA_H-elongata_contig19366.5376.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19366.5376.1
Unique NamemRNA_H-elongata_contig19366.5376.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: D8LNU7_ECTSI (Protein kinase domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNU7_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 1.750e-141
Identity = 201/264 (76.14%), Postives = 237/264 (89.77%), Query Frame = 1
Query:    1 FPTVMRTQDVRSGRVLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAVELPSNRTGAILMEYCPRGHLLDALNKRGGQRLSENSVLSIMSDVVSAIKYLHDKGLTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPPPR 792
            F  +   +DV +GR LVLKRS+LQS  GRVVYE+EAS MR+LAHPN+VQ VTAVEL S++TGAILME+CPRGHLL+ALN  GG+R+ E +VLS+M D+VSA+KYLHDKG+THRD+KL+NILRS SG HKLCDFGSCVQGRVPL TAEQRANEEEVVEKTTT+MYRAPE+VDLY+E+ELTEKVD+W+LGC+LYAVCYLKNPFQDAGNLGILNA+IR+P+DS FS+ LV+L+RR LTASPT RPSASEVE+ +HALS+G  LPPPR
Sbjct:   34 FAFIHLVEDVNTGRALVLKRSSLQSHEGRVVYEKEASIMRSLAHPNIVQIVTAVELQSSKTGAILMEFCPRGHLLEALNSLGGKRMEEEAVLSVMCDIVSAVKYLHDKGITHRDMKLENILRSSSGPHKLCDFGSCVQGRVPLDTAEQRANEEEVVEKTTTQMYRAPEMVDLYLERELTEKVDIWALGCILYAVCYLKNPFQDAGNLGILNAKIRIPDDSVFSSGLVDLIRRCLTASPTHRPSASEVEAGIHALSKGNPLPPPR 297          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A6H5K0M2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M2_9PHAE)

HSP 1 Score: 415 bits (1067), Expect = 2.510e-137
Identity = 199/264 (75.38%), Postives = 238/264 (90.15%), Query Frame = 1
Query:    1 FPTVMRTQDVRSGRVLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAVELPSNRTGAILMEYCPRGHLLDALNKRGGQRLSENSVLSIMSDVVSAIKYLHDKGLTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPPPR 792
            F  +   +DV +GR+LVLKRS+LQS  GRV+YE+EAS MR+LAHPN+VQ VTAVEL S++TGAILME+CPRGHLL+ALN  GG+ + E +VLS+M D+VSA+KYLHDKG+THRD+KL+NILRS SGSHKLCDFGSCVQGRVPL TAEQRANEEEVVEKTTT+MYRAPE+VDLY+E+ELTE+VD+W+LGC+LYAVCYLKNPFQDAGNLGILNA+IR+P+DS FS+ LV+L+RR LTASPT RPSASEVE+ +HALS+G  LPPPR
Sbjct:   33 FAFIHLVEDVNTGRLLVLKRSSLQSHEGRVIYEKEASIMRSLAHPNIVQIVTAVELQSSKTGAILMEFCPRGHLLEALNSLGGKLMEEEAVLSVMCDIVSAVKYLHDKGITHRDVKLENILRSSSGSHKLCDFGSCVQGRVPLDTAEQRANEEEVVEKTTTQMYRAPEMVDLYLERELTERVDIWALGCILYAVCYLKNPFQDAGNLGILNAKIRIPDDSVFSSGLVDLIRRCLTASPTHRPSASEVEAGIHALSKGNPLPPPR 296          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A835ZCB7_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB7_9STRA)

HSP 1 Score: 210 bits (535), Expect = 7.350e-64
Identity = 112/259 (43.24%), Postives = 159/259 (61.39%), Query Frame = 1
Query:    1 FPTVMRTQDVRSGRVLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAVELPSNRTGAILMEYCPRGHLLDALNK--RGGQRLSENSVLSIMSDVVSAIKYLHDKGLTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRG 771
            F  +   +D  +G+ L LK+ ++Q+   R + +RE   MR+ +HPN++  + A E+  N    I+ME CP GHLL  + +    G+ L E  +L I+ DV   + YLH  G+ HRDIKL+N L +  GS +LCDFGS V+G V L +A QRANE EV+E+TTT+ +RAPE+ DL++ +EL   VDVW+LGCV Y + YL++PF    NL I+NARI  P     S     L+ RML A P  R SA++  S + A+  G
Sbjct:   31 FAYIYAAEDTSNGQELCLKKMHVQTPEARALAQREIDLMRSFSHPNLLSALDA-EI-HNSLAYIIMELCPGGHLLARMQRLQAAGKTLPEPEILKILGDVTRGLVYLHGMGIAHRDIKLENCLIAADGSCRLCDFGSAVRGPVSLESAAQRANEAEVIERTTTQQFRAPEMADLFVARELGTAVDVWALGCVAYTLAYLRHPFPSDSNLAIINARIVFPTAPPLSDDFKALVARMLVADPAARASAADALSCIAAMEAG 287          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A812U9J4_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U9J4_SYMMI)

HSP 1 Score: 215 bits (547), Expect = 3.390e-62
Identity = 105/249 (42.17%), Postives = 152/249 (61.04%), Query Frame = 1
Query:   52 LKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTA--VELPSNRTGAILMEYCPRGHLLDALNKRGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPP 786
            LKR  +Q      +  +E + ++   H N+V  +++  + +   R   +L+EYCP GHLL  LN R G  L  + +  I   ++ A+  LH+    + HRD+KL+NIL S+ G  KLCDFGSC+ G VP  T E+R+  EE + K TT+MYRAPE+VDLYM  ELTE  D+W+LGC+LY +C++ +PFQDAGNLGIL+A++ +P DS     +  L+ RML      RPS   +  +  AL+    +PP
Sbjct:    9 LKRCGIQRQENYDIVNKEITLLKRFRHRNIVHLISSEILTVGGKREALLLLEYCPGGHLLQRLNARNGTPLPNSDICRIFGQILQAVLPLHESSPPVIHRDLKLENILHSIGGDVKLCDFGSCMIGYVPTRTPEERSKAEEAISKETTQMYRAPEMVDLYMRDELTESTDIWALGCILYCLCFISHPFQDAGNLGILSAKVTMPHDSAVPPDMKVLIMRMLDMDAEARPSVQYLIQATDALATNNPIPP 257          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A7S1GKX8_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GKX8_CYCTE)

HSP 1 Score: 186 bits (473), Expect = 4.920e-52
Identity = 109/283 (38.52%), Postives = 160/283 (56.54%), Query Frame = 1
Query:   43 VLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQF---------VTAVELPSNRTGA----------------------ILMEYCPRGHLLDALNK--RGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPP 786
            V+VLK +++ S   R + E+EA  +  L+HP++++          V    L +N  G                       ILMEYC  GH LD  NK    GQR   ++++     + +A+ YLH +   + HRD+K  N L   +G++KLCDFGS V G V L T + RA  EEV++KTTT+M+RAPE+VDL+M K+LT+  DVW+LGC LY++ +L+N F++  NL IL+   ++PED+ +   LVEL+ RMLT     R   +EV   + A+  G  LPP
Sbjct:   77 VMVLKVTSIHSRQQRDIAEKEAKLLSRLSHPSIIKMYDSSYRTAPVQQSRLVANIVGVNKDKGDGGAAGQPGKEGRPQHLILMEYCEGGHALDVCNKLSAAGQRFDLSALIIAFGQICNAVSYLHAQRPPIVHRDLKPVNFLVK-NGAYKLCDFGSAVFGHVELKTPKSRAEAEEVIQKTTTQMFRAPEMVDLFMAKKLTQSTDVWALGCCLYSLAFLQNCFEEGSNLAILSRNYKIPEDNPYGEGLVELIDRMLTLDSKARSDMTEVILCLSAIYSGRPLPP 358          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A7S0XCH2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XCH2_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.180e-51
Identity = 90/200 (45.00%), Postives = 132/200 (66.00%), Query Frame = 1
Query:   49 VLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAVELPSNRTGA----ILMEYCPRGHLLDALNKRGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGIL 630
            VLKR  +Q+     + ++E + ++      +V+   A ++  NR+GA    +L+EYCP GHLL+ LN R GQ L   S+  I   ++ AI+  H     +THRD+KL+NIL  +  + ++CDFGSCV G   L  +E+R   EE++ K TT+MYRAPE+VDLY+ + LTEK D+W+LGC+ YA+C+L +PFQDAG+LGIL
Sbjct:   41 VLKRCVIQTNDSLEIVKKEINILQRFEGSYIVKMF-ASDVIVNRSGAREALLLLEYCPGGHLLERLNNRKGQPLPLTSIYRIFGQILLAIQTFHHSNPIITHRDLKLENILFGIDSNVRICDFGSCVSGYTYLRNSEERYAAEEIISKETTQMYRAPEMVDLYLRQVLTEKTDIWALGCIFYALCFLSHPFQDAGSLGIL 239          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A7S3P7A6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7A6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 4.800e-51
Identity = 109/276 (39.49%), Postives = 162/276 (58.70%), Query Frame = 1
Query:   22 QDVRSGRV-LVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTA----VELPSNR------------TGAILMEYCPRGHLLDALNK--RGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPP 786
            ++  +G+V +VLK +++ S   R + E+EA  +  L+HP++++        V  PS R               ILMEYC  GH LD  +     G+R   + ++     + +A+ YLH +   + HRD+K  N L   +G +KLCDFGS V G V L T E RA  EEV++KTTT+M+RAPE+VDLYM K+LT+  DVW+LGC LY++ +L+N F++  NL IL+ + ++PED+ +   LVEL+ RMLT     R   +EV   + A+  G  LPP
Sbjct:   89 KEAAAGKVEMVLKVTSILSRQQRDIAEKEAKLLSRLSHPSIIKMFDTCYRTVAGPSKRGKDDAGKPKERPQHLILMEYCEGGHALDVCSNLAAAGERFDLSQLIIAFGQICNAVSYLHAQRPPIVHRDLKPANFLVKNTG-YKLCDFGSAVFGHVDLRTPEARAEAEEVIQKTTTQMFRAPEMVDLYMAKKLTQATDVWALGCCLYSLAFLQNCFEEGSNLAILSRKYKIPEDNPYGDGLVELLDRMLTVDSKARADMTEVILCLSAVYSGRPLPP 363          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A1E7FEA7_9STRA (Kinase-like protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEA7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.030e-51
Identity = 99/253 (39.13%), Postives = 153/253 (60.47%), Query Frame = 1
Query:   49 VLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQ-----FVTAVELPSNRTGA-------------ILMEYCPRGHLLDALNKRG--GQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEV 741
            VLK +++ S   R + E+EA  +  L+HP++V+     + TA +  S + G              ILMEYC  GH LD  NK    GQR   ++++     + +A+ YLH +   + HRD+K  N L   +G++KLCDFGS V G V L T + R++ E+VV+KTTT+M+RAPE++DL++ K+LT+  DVW+LGC LY++ +L+N F++  NL IL+ +  +P+D+ +   LVEL+ RML      R   +EV
Sbjct:    1 VLKVTSIHSRAQRDIAEKEAKLLSRLSHPSIVKMYNACYRTASQQQSGKRGKDQSNTGKERPQHLILMEYCEGGHALDVCNKLASQGQRFDLSTLIIAFGQICNAVSYLHAQRPPIVHRDLKPVNFLVK-NGAYKLCDFGSAVFGHVDLRTPKARSDAEDVVQKTTTQMFRAPEMIDLFVTKKLTQSTDVWALGCCLYSLAFLQNCFEEGSNLAILSRKYTIPDDNPYGDGLVELIDRMLAVDYKARADMTEV 252          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: B7G086_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G086_PHATC)

HSP 1 Score: 182 bits (462), Expect = 2.560e-49
Identity = 107/274 (39.05%), Postives = 158/274 (57.66%), Query Frame = 1
Query:   40 RVLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFV-----TAVELPSNRTGA----------------ILMEYCPRGHLLDALNK--RGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPP 786
            R +VLK +++ S   R + E+EA  +  L+HP++++ +     T  +  S+  G                 ILMEYC  GH LD  N+    G R    +++     + +A+ YLH +   + HRD+K+ N L    G++KLCDFGS V G V L T + R+  EEV+EKTTT+M+RAPE+VDLYM K+LT+  DVW+LG  LY++ YL+N F++  NL IL+   ++PE++ +   LVEL+ RMLT     R   +EV   + AL  G  LPP
Sbjct:   99 REMVLKVTSIISRQQREIAEKEAKLLSRLSHPSIIKMIEACYRTVTQSASSGVGRFGKGDSDKAKERPQHMILMEYCEGGHSLDVCNQMVEQGTRYDLGTLIIAFGQICNAVSYLHAQRPPIVHRDLKMANFLVK-DGAYKLCDFGSAVFGHVDLKTPQNRSEAEEVIEKTTTQMFRAPEMVDLYMCKKLTQATDVWALGVCLYSMAYLQNCFEEGSNLAILSNNYKIPEENHYGEGLVELIDRMLTIDSKHRADMTEVILCLSALYSGRPLPP 371          
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Match: A0A1Z5JH39_FISSO (AP2-associated kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JH39_FISSO)

HSP 1 Score: 179 bits (454), Expect = 6.210e-49
Identity = 102/268 (38.06%), Postives = 157/268 (58.58%), Query Frame = 1
Query:   46 LVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAVEL--PSNRTGA---------------ILMEYCPRGHLLDALNK--RGGQRLSENSVLSIMSDVVSAIKYLHDKG--LTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEEVVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDAGNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHALSRGGALPP 786
            LVLK +++ S   R + E+EA  +  L+HP++++ V A     P+ ++G                ILMEYC  GH L+  N     G R   ++++     + +A+ YLH +   + HRD+K  N L    G++KLCDFGS V G V L T + R+  EEV++KTTT+M+RAPE+VDL+M K+LT+  DVW+LGC LY++ +L++ F++  NL IL+   ++PE++ +   L EL+ RMLT     R   +EV   + A+  G  LPP
Sbjct:   86 LVLKVTSIISRQQRDIAEKEAKLLSRLSHPSIIKMVDACYRTPPTEKSGGFRSKDDGKKERPQHLILMEYCEGGHALNVCNNLMASGMRFDLSTLIIAFGQICNAVSYLHAQRPPIVHRDLKPANFLVK-GGAYKLCDFGSAVFGHVKLDTPQARSEAEEVIQKTTTQMFRAPEMVDLFMAKKLTQATDVWALGCCLYSMAFLQDCFEEGSNLAILSRNFKIPENNPYGDGLTELIDRMLTVDVKARADMTEVILCLSAVYSGRPLPP 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19366.5376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNU7_ECTSI1.750e-14176.14Protein kinase domain-containing protein (Fragment... [more]
A0A6H5K0M2_9PHAE2.510e-13775.38Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A835ZCB7_9STRA7.350e-6443.24Kinase-like domain-containing protein (Fragment) n... [more]
A0A812U9J4_SYMMI3.390e-6242.17Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7S1GKX8_CYCTE4.920e-5238.52Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S0XCH2_9STRA2.180e-5145.00Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3P7A6_9STRA4.800e-5139.49Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1E7FEA7_9STRA9.030e-5139.13Kinase-like protein (Fragment) n=1 Tax=Fragilariop... [more]
B7G086_PHATC2.560e-4939.05Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JH39_FISSO6.210e-4938.06AP2-associated kinase n=2 Tax=Fistulifera solaris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19366contigH-elongata_contig19366:3761..6922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue3.7e-44
Seed eggNOG ortholog2850.Phatr46154
KEGG koko:K08853
EggNOG free text desc.Protein tyrosine kinase
EggNOG OGs2XB8V@2836,KOG1989@1,KOG1989@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-08_005770.1
Exons7
Model size792
Cds size780
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19366.5376.1prot_H-elongata_contig19366.5376.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19366 3773..6922 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.156682-UTR-H-elongata_contig19366:3760..37721622930103.156682-UTR-H-elongata_contig19366:3760..3772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19366 3761..3772 +
1691679281.1778045-UTR-H-elongata_contig19366:3760..37721691679281.1778045-UTR-H-elongata_contig19366:3760..3772Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19366 3761..3772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930103.176883-CDS-H-elongata_contig19366:3772..39071622930103.176883-CDS-H-elongata_contig19366:3772..3907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 3773..3907 +
1691679281.18739-CDS-H-elongata_contig19366:3772..39071691679281.18739-CDS-H-elongata_contig19366:3772..3907Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 3773..3907 +
1622930103.1972244-CDS-H-elongata_contig19366:4587..47391622930103.1972244-CDS-H-elongata_contig19366:4587..4739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 4588..4739 +
1691679281.1948426-CDS-H-elongata_contig19366:4587..47391691679281.1948426-CDS-H-elongata_contig19366:4587..4739Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 4588..4739 +
1622930103.2149556-CDS-H-elongata_contig19366:5139..52541622930103.2149556-CDS-H-elongata_contig19366:5139..5254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 5140..5254 +
1691679281.2023485-CDS-H-elongata_contig19366:5139..52541691679281.2023485-CDS-H-elongata_contig19366:5139..5254Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 5140..5254 +
1622930103.2310069-CDS-H-elongata_contig19366:5559..57001622930103.2310069-CDS-H-elongata_contig19366:5559..5700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 5560..5700 +
1691679281.2183373-CDS-H-elongata_contig19366:5559..57001691679281.2183373-CDS-H-elongata_contig19366:5559..5700Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 5560..5700 +
1622930103.2464006-CDS-H-elongata_contig19366:6026..61091622930103.2464006-CDS-H-elongata_contig19366:6026..6109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6027..6109 +
1691679281.2347636-CDS-H-elongata_contig19366:6026..61091691679281.2347636-CDS-H-elongata_contig19366:6026..6109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6027..6109 +
1622930103.2615595-CDS-H-elongata_contig19366:6519..66191622930103.2615595-CDS-H-elongata_contig19366:6519..6619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6520..6619 +
1691679281.256816-CDS-H-elongata_contig19366:6519..66191691679281.256816-CDS-H-elongata_contig19366:6519..6619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6520..6619 +
1622930103.2779305-CDS-H-elongata_contig19366:6868..69221622930103.2779305-CDS-H-elongata_contig19366:6868..6922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6869..6922 +
1691679281.2773979-CDS-H-elongata_contig19366:6868..69221691679281.2773979-CDS-H-elongata_contig19366:6868..6922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19366 6869..6922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19366.5376.1

>prot_H-elongata_contig19366.5376.1 ID=prot_H-elongata_contig19366.5376.1|Name=mRNA_H-elongata_contig19366.5376.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
MRTQDVRSGRVLVLKRSNLQSLHGRVVYEREASTMRTLAHPNVVQFVTAV
ELPSNRTGAILMEYCPRGHLLDALNKRGGQRLSENSVLSIMSDVVSAIKY
LHDKGLTHRDIKLDNILRSLSGSHKLCDFGSCVQGRVPLVTAEQRANEEE
VVEKTTTRMYRAPELVDLYMEKELTEKVDVWSLGCVLYAVCYLKNPFQDA
GNLGILNARIRVPEDSKFSASLVELMRRMLTASPTCRPSASEVESSVHAL
SRGGALPPPR
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mRNA from alignment at H-elongata_contig19366:3761..6922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19366.5376.1 ID=mRNA_H-elongata_contig19366.5376.1|Name=mRNA_H-elongata_contig19366.5376.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3162bp|location=Sequence derived from alignment at H-elongata_contig19366:3761..6922+ (Himanthalia elongata Himel1 dioecious)
TTTCCGACGGTGATGAGAACTCAGGACGTGCGTAGCGGGCGAGTGCTGGT GCTGAAGCGCTCCAACCTTCAGAGCCTTCATGGCCGTGTGGTGTACGAGC GCGAGGCCTCCACCATGCGGACGCTCGCCCACCCCAACGTCGTTCAGGTA TTATTAATAGGAATATTCAATGGGGATTCAATGGGGAGCGGGGTGGGAGG GGGATTTTTCATTTTTTTCGGCCGATGCGCCCTTCAACGCGCTAGGTTCT ACCAATCCTATCAATCCAACCTACTACAGCCGTGCCCTGCCGTACCGCAT GCCACCTGTGACCTCCAAGATAATGTATGAATATATGGCTATATATATAT ATAGCCATATATTCCCGTTTCATGCGTATAGCTAATATTGATAATTAGTA CTGCAATGCAATTAGTTAATAGTACCCCTCCGTCCTCAACCGATGGCTGA ACTTTTCTGGAGTCATGACGCTGTTCGCCTCAGGAATAAATAAAATAATA AAATCCTCGTAAAGGTTGATCCATCGTCGTTGTTGATACAGCGCGATGAA ATCCATGTCCGGAAATCGGTATAGAGGGGGTTTGCACCGGCAGGGGAGGA TAGAGGACGAAGGGGCTTTTAAATGTAAACGATATTTCTTGGGAAGGCGC AGGCATGTACGTAGCTCGAAAGACGAGAAACGAAGCGGTATAGATACACG TATTTATAGGCCTTTTTTGTTCTTTTAGAGAAATCAACTATTAATAACAG CTTGAGCTCGACGGTCACGGCGCCCCTCCTGCCCGTTGCCTGTCTCTTTT GTCGAAATCGTGTCGAAATTGTTGTAGTTTGTCACCGCCGTGGAGCTTCC AAGCAACCGAACGGGCGCGATTTTGATGGAGTACTGTCCAAGGGGTCACC TGCTGGACGCGCTCAACAAACGAGGGGGTCAGCGCTTGTCAGAAAATTCG GTGCTGTCGATCATGAGCGACGTTGTCAGGTGAAAAAAACACGCTTTTGG GGGGGAGGTGCAAGGCATCCTACAAACTGAAAGAAAGAGAGAGGGGGCAT CTAGGAGGGGGACACGGGCGCTAAAAAACATTGAAACGCTTTGCCGTTTC TCTTCCGTAGAGTGAAAGAAGCGCACGGCGTGCCTTGTTGAGACATAGTT TTCGGGAAATCTCCGCCGTCGTCGAGGGATCCACGTTAGTTTTGTACGAG GGCAAGAGGAGGGAGGGGCGTTCTCTCACGTTCGCGCCTGCCCGAGTTCG TGTTCAAATGAAACCAAGCATTGGCAAGGGGGGGCGGTTACCCTCCGTCC CCGGCTGCTCCTTCCTCCCGCCCCTGGTTCGGAGCTTATGTTATTCCCTC CGGCCGGCCCGTTCTGTTGACGTGATCAGCGCGATCAAGTACCTCCACGA CAAGGGCCTGACCCACCGCGATATCAAGCTCGACAACATCCTCAGATCAT TGTCTGGGTCGCACAAGCTGTGCGACTTCGGATCTTGCGTACAGGTGCGT TTGGCTTGGCTGGCTAGAAACACAAACACACGCACACGTGTCGATGCACG CGTCGCACGGGTGCAGGCTTGAAAAGAGAAGGTCGATAACGACGAGCCTC CCCCCCCTCCTTTATCTCCTTTATCTGGCTTTTTATTTCGCGGTGCCTCC TTTCACAACCACGCAAGATATATTTTATCGTCGAACGCTCTGCAAGTGTC TCCCCAAGATTGCAGGGAAAATCTCGAAGATCGCTTCGGTTGACTCAATT GAAACCACCCTCTCCCCCCTTATGCCCCGAACGCGCGGGGACCATCCAGG GTCGAGTACCGCTTGTCACAGCGGAGCAGAGGGCGAACGAGGAAGAGGTG GTGGAGAAGACGACCACGAGGATGTACCGTGCGCCAGAATTGGTGGACCT TTACATGGAGAAAGAGCTGACGGAGAAGGTGGACGTCTGGGTAAGAGGCG GGTAAATAGTCGGGTGGTCTACACACCGTTGGGGGTGGTGGGGGAGGGAT ATTTCTTCTGGATCAACCTCCTTTCATTATCACTCTCTTTCTCAGAAATA CCACCAACCTGACCCGTCATCGCGGTTGCCAGCTTCCCGAACGGTATCGG TGGGAGCATCTTCGTGAATCCGTTTAACGGAAGGAAGGGCGTGGTGCAGC TCTCGCCTCGAGCACTGTCGACCTCCTCGTGGGGATACTCAATGAATCGC GGTAGGCCCGTCCGCCCGCTTTCCCTCCCTTCGCTTGACGCCGTTCGCCG TCCCTCATTTTCTTAGTCCTTGGGCTGTGTACTGTACGCTGTCTGCTACC TGAAAAACCCTTTCCAAGACGCGGGCAACCTTGGGATCCTCAACGCAAGG TGACACGTTATCCTTGAAGTCCGTTTCGCGGCGCGGCGCAGGGTGGCCCC GCTAAAATATATTGTGTTTCGTTTTGCTCGTGAAGCAGGCGCAGCTGCGT GTGTGTGTGTATTTATTAAATTGTACATAACCGCGCAATCCAGTTCTTTC ATTCTAGCTCTTCTAGGCTACTCTCGCATTGATCCTCCCAAAAGGGGATT CAATCATATTTGCTTGTGTGTGTGTCTGTGTCTCTGTGTGTGTGTGTGTA TTTATTAAATTGCGCATAACCGCGCAATCCGGCCCTGTCGTCCTAATCCT TCTATGCCACTCGTATTGATCCTCCTAGGGTGGGTATGTGTGTGTGTGTG TATCACGAGTGACCAATTTCCTTATACCTGTTCTCCTCGTAACGTGCTGG CTCTCGCAGGATTCGCGTCCCCGAAGATTCGAAATTTTCGGCCAGCTTGG TGGAACTCATGCGGCGCATGCTCACGGCGTCACCGACCTGCAGACCCAGC GCCTCCGAGGTGTGTGTGTGTGTAATGAGTCGGCCATGTGCTGGGAGACG TTGTTGTGCACGAGTCGTGCTATTATTTTCGTGAAAGCTGTCTCTGTTTT AAAAGTCGCACCACTTCACAGGCTCAACGATGATTGATTTGAGCGCCGGA TAGAGCCTCCCCAGGCAGCGTCCAATGTGAACCTACCAGCAGCGCAACCG CACGGGGGGTAGGAACCACGAAGGAACCCGATGATTGCACGCCCTCGATC AACGACAGGTGGAGAGCAGTGTTCATGCTTTGAGCAGGGGGGGGGCGCTT CCCCCGCCGCGG
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Coding sequence (CDS) from alignment at H-elongata_contig19366:3761..6922+

>mRNA_H-elongata_contig19366.5376.1 ID=mRNA_H-elongata_contig19366.5376.1|Name=mRNA_H-elongata_contig19366.5376.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig19366:3761..6922+ (Himanthalia elongata Himel1 dioecious)
ATGAGAACTCAGGACGTGCGTAGCGGGCGAGTGCTGGTGCTGAAGCGCTC
CAACCTTCAGAGCCTTCATGGCCGTGTGGTGTACGAGCGCGAGGCCTCCA
CCATGCGGACGCTCGCCCACCCCAACGTCGTTCAGATGAGAACTCAGGAC
GTGCGTAGCGGGCGAGTGCTGGTGCTGAAGCGCTCCAACCTTCAGAGCCT
TCATGGCCGTGTGGTGTACGAGCGCGAGGCCTCCACCATGCGGACGCTCG
CCCACCCCAACGTCGTTCAGTTTGTCACCGCCGTGGAGCTTCCAAGCAAC
CGAACGGGCGCGATTTTGATGGAGTACTGTCCAAGGGGTCACCTGCTGGA
CGCGCTCAACAAACGAGGGGGTCAGCGCTTGTCAGAAAATTCGGTGCTGT
CGATCATGAGCGACGTTGTCAGTTTGTCACCGCCGTGGAGCTTCCAAGCA
ACCGAACGGGCGCGATTTTGATGGAGTACTGTCCAAGGGGTCACCTGCTG
GACGCGCTCAACAAACGAGGGGGTCAGCGCTTGTCAGAAAATTCGGTGCT
GTCGATCATGAGCGACGTTGTCAGCGCGATCAAGTACCTCCACGACAAGG
GCCTGACCCACCGCGATATCAAGCTCGACAACATCCTCAGATCATTGTCT
GGGTCGCACAAGCTGTGCGACTTCGGATCTTGCGTACAGCGCGATCAAGT
ACCTCCACGACAAGGGCCTGACCCACCGCGATATCAAGCTCGACAACATC
CTCAGATCATTGTCTGGGTCGCACAAGCTGTGCGACTTCGGATCTTGCGT
ACAGGGTCGAGTACCGCTTGTCACAGCGGAGCAGAGGGCGAACGAGGAAG
AGGTGGTGGAGAAGACGACCACGAGGATGTACCGTGCGCCAGAATTGGTG
GACCTTTACATGGAGAAAGAGCTGACGGAGAAGGTGGACGTCTGGGGTCG
AGTACCGCTTGTCACAGCGGAGCAGAGGGCGAACGAGGAAGAGGTGGTGG
AGAAGACGACCACGAGGATGTACCGTGCGCCAGAATTGGTGGACCTTTAC
ATGGAGAAAGAGCTGACGGAGAAGGTGGACGTCTGGTCCTTGGGCTGTGT
ACTGTACGCTGTCTGCTACCTGAAAAACCCTTTCCAAGACGCGGGCAACC
TTGGGATCCTCAACGCAAGTCCTTGGGCTGTGTACTGTACGCTGTCTGCT
ACCTGAAAAACCCTTTCCAAGACGCGGGCAACCTTGGGATCCTCAACGCA
AGGATTCGCGTCCCCGAAGATTCGAAATTTTCGGCCAGCTTGGTGGAACT
CATGCGGCGCATGCTCACGGCGTCACCGACCTGCAGACCCAGCGCCTCCG
AGGATTCGCGTCCCCGAAGATTCGAAATTTTCGGCCAGCTTGGTGGAACT
CATGCGGCGCATGCTCACGGCGTCACCGACCTGCAGACCCAGCGCCTCCG
AGGTGGAGAGCAGTGTTCATGCTTTGAGCAGGGGGGGGGCGCTTCCCCCG
CCGCGGGTGGAGAGCAGTGTTCATGCTTTGAGCAGGGGGGGGGCGCTTCC
CCCGCCGCGG
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