mRNA_H-elongata_contig19154.5299.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19154.5299.1
Unique NamemRNA_H-elongata_contig19154.5299.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19154.5299.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 8.730e-26
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 2 
Query:  392 QGEMPESLCNLYTLRHLNLSYNSGLRGWIPEGLGDLVNLKTLHLYSALLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFSIEGNEQLILAHDTDFGGRGAFGT-GRSATTWEAAEEAMELHTASHFGA 949
            +GEMPESLCNLY+L+HLNLSYN GLRGWIPEGLGDL+ LKTLHLYSALL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IEGNEQL+L+ ++ +GG+  F T G S   WEAAEEA+ELHTA+H GA
Sbjct:   90 EGEMPESLCNLYSLQHLNLSYNFGLRGWIPEGLGDLIKLKTLHLYSALLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGNEQLVLSRNSHYGGQATFETSGSSNQAWEAAEEAIELHTAAHLGA 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19154.5299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ86_ECTSI8.730e-2683.96Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19154contigH-elongata_contig19154:2562..5508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1584
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19154.5299.1prot_H-elongata_contig19154.5299.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19154 3054..4897 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.7481534-UTR-H-elongata_contig19154:2561..27861622930093.7481534-UTR-H-elongata_contig19154:2561..2786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 2562..2786 +
1691679277.7872682-UTR-H-elongata_contig19154:2561..27861691679277.7872682-UTR-H-elongata_contig19154:2561..2786Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 2562..2786 +
1622930093.7775042-UTR-H-elongata_contig19154:2878..30531622930093.7775042-UTR-H-elongata_contig19154:2878..3053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 2879..3053 +
1691679277.8004541-UTR-H-elongata_contig19154:2878..30531691679277.8004541-UTR-H-elongata_contig19154:2878..3053Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 2879..3053 +
1622930093.8980596-UTR-H-elongata_contig19154:4897..55081622930093.8980596-UTR-H-elongata_contig19154:4897..5508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 4898..5508 +
1691679277.8610108-UTR-H-elongata_contig19154:4897..55081691679277.8610108-UTR-H-elongata_contig19154:4897..5508Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19154 4898..5508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.791992-CDS-H-elongata_contig19154:3053..31951622930093.791992-CDS-H-elongata_contig19154:3053..3195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 3054..3195 +
1691679277.8150067-CDS-H-elongata_contig19154:3053..31951691679277.8150067-CDS-H-elongata_contig19154:3053..3195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 3054..3195 +
1622930093.8109343-CDS-H-elongata_contig19154:3792..40371622930093.8109343-CDS-H-elongata_contig19154:3792..4037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 3793..4037 +
1691679277.8238227-CDS-H-elongata_contig19154:3792..40371691679277.8238227-CDS-H-elongata_contig19154:3792..4037Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 3793..4037 +
1622930093.826303-CDS-H-elongata_contig19154:4210..42851622930093.826303-CDS-H-elongata_contig19154:4210..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4211..4285 +
1691679277.8324666-CDS-H-elongata_contig19154:4210..42851691679277.8324666-CDS-H-elongata_contig19154:4210..4285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4211..4285 +
1622930093.844905-CDS-H-elongata_contig19154:4529..46221622930093.844905-CDS-H-elongata_contig19154:4529..4622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4530..4622 +
1691679277.840953-CDS-H-elongata_contig19154:4529..46221691679277.840953-CDS-H-elongata_contig19154:4529..4622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4530..4622 +
1622930093.8687053-CDS-H-elongata_contig19154:4879..48971622930093.8687053-CDS-H-elongata_contig19154:4879..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4880..4897 +
1691679277.8493097-CDS-H-elongata_contig19154:4879..48971691679277.8493097-CDS-H-elongata_contig19154:4879..4897Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19154 4880..4897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19154.5299.1

>prot_H-elongata_contig19154.5299.1 ID=prot_H-elongata_contig19154.5299.1|Name=mRNA_H-elongata_contig19154.5299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MPESLCNLYTLRHLNLSYNSGLRGWIPEGLGDLVNLKTLHLYSALLTGAI
PESLGQLRSLEELFLHGNRLTGEIPLSLGNLRRLRKLFLNSNDLIGPVPS
ELGRLSSLDTLNLSWNNLRGVIPASIGALENLRLFSIEGNEQLILAHDTD
FGGRGAFGTGRSATTWEAAEEAMELHTASHFGAGASNPLG*
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mRNA from alignment at H-elongata_contig19154:2562..5508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19154.5299.1 ID=mRNA_H-elongata_contig19154.5299.1|Name=mRNA_H-elongata_contig19154.5299.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2947bp|location=Sequence derived from alignment at H-elongata_contig19154:2562..5508+ (Himanthalia elongata Himel1 dioecious)
GGCCTGTCTGTGTATGTGTGTGTGTACGTACTGCTAATAGAGGCTAAAGA
GGGTTCGGATTGTAAAAATATATAAAACGGAGCTGAATTTCGTCGGGTAA
CTATTATGTGTCTGTTGGTGGGGTAAGGGCCTACTGTCGCAATCGAGAAC
TATTCTCAAAAGATATCGTGGAACTCGCCCAGATAAGTCTTGGTGGTAGT
GTAACCTCAAGACTTTTAAAAACTCTTAAAAAAAAAATGCCGTTCAAGCC
TTTTGACGTATTGTCGACCTCGTTCGGCGATTCTGCTGAATTATAAACTC
GTTAGGTTAGTGATACGTCATGCCAGGGTGAAGGAAAAAAAAGGGTGCAT
TGTGGAAACAGAAGTTTGCAGTCGGTCGCCGTTTTGACGCATCAGTCCAG
CGGCCCTTTCAATCGAACGGCTAGTTTTGGTTTTGCGTTCATCAACGGTC
CTTTACCGCCCACAAACGGGACTCACTTGCGCGCAGGGAGAAATGCCGGA
GAGCTTGTGCAATCTTTACACGTTGCGGCACCTCAATCTTTCTTACAACT
CTGGGCTGAGGGGCTGGATCCCGGAGGGACTTGGGGACCTTGTCAATCTC
AAAACCCTTCACTTGTACAGTGCTCTGCTTACAGGTGGGCTTTACGGGGT
ACTATTGTACTGTAGTCTATAACTGTGTTGAGTGACGATTGTAAGAGGGC
GATTGTAAGAGGGTATGCGCGTGGGGGGGGGGTGTGGGTTTGTAATTAGT
GCTCATGACCTATAAGGGAGTATGGATCAAAACTGGGTATCGTTGGCAAT
CCTGCTCGTGTTTTTTTTCCATGTGCCCCCGTCCGTCCGCATCTGAGAAT
ATTTGGTCTCGCGAGACGAGTTCGGCCGTCCTGTCCGATGTATATCCCAG
CCGAACATTGCACATGCCTTGTCAACGTTTTCAACCACTGTGGAAAAATC
GTTCAGCGGGCTTCGCAGTCGGAGATGGGTCGGGCGCGTGTATCGTATTG
GTTGGTCTCAACTTCAAGGTCAAGATCAGGTCATGTAACTGGTATACAGT
AGTCTAATGGGAATCGATGTAATAATAAAACATAGAAAAACGACAGCAAA
GCAAAATCAAGAGCGCAAGAAGTTTGCTTCGCGTATGAAATGAAATGAAA
TGAAATCGAGAGACCGAACGGGCAGACGTAGGTTCAAATCATCCCGCCTT
TGTCTTCCCCGTTGATTTCCCCTCCCCCCAGGCGCCATACCAGAGTCACT
GGGGCAACTAAGAAGCTTGGAAGAATTGTTCCTACACGGCAACCGCCTCA
CCGGCGAGATTCCGCTGTCTCTCGGCAACCTCAGGCGGCTGCGAAAGCTT
TTCTTGAACTCGAATGATCTAATAGGGCCAGTGCCATCGGAGCTGGGACG
CTTATCATCCCTCGACACTCTGAATCTGAGCTGGAATAACTTGCGCGGAG
TGATTCCGGCGAGCATTGGGGCCCTGGTGAGATGAGTAGTCCCAGAGGCA
GCCTTCAGAGTGGTGGTTAGACGGTTTTCAACCGCACCGCAACCGAGGTG
CCCGGGTGCAGTCGCCTGTTTCTGTGTTGCCCTCCTGATGTCGCCTGCTG
GACCGCACGCTCTGTAGCCTCATGCCTCAGATGTTTTTGTGTTGCGCAGG
AAAACCTTCGGCTCTTTTCTATCGAGGGAAACGAACAGCTCATCCTCGCG
CACGATACCGACTTCGGTGGAAGGGTGAGCGAACGAGCGCTGCCAAGCCC
CAGAATATATATCACCAGTACGCTAGTACGAGGCGCACTGGAAACCGCGT
CGAACTCTTGAGGCAGCGAAGCGCGCTTTTTCTTGAGGCCTCTTCAAGGC
CAGAGGAGTTCGCAAGAGGCTTTGTTTACTCCGCGGCTTTCTCACCCCAT
GCCTTGCTCAAACCATCTAAATCGTTGATGGCTGCACCCGCCCCCCCCTC
TGGCCATTCCACCTTAAGGGTGCCTTTGGCACTGGTCGGTCGGCGACAAC
GTGGGAAGCGGCCGAGGAAGCCATGGAGCTGCACACAGCCTCACATTTCG
GTGCTGGAGCGGTAAGCGAAGCACTTTAGCGGTTGTGAAAGACGTAATGT
TGAAGAAGCAACCATCGCACGCTGTTGAAGAAGTTGTTGAGATGACCCGT
GCTTCCGGTGTGGTTTCCGAGAGTGGAGGGGGGGGGCTGTACTTTGCGTT
CTCGGTCGAATTACAATCCACCTGGCACAACATCAATCAGTGCGTTCACA
TCGTTTCCTGATCTCGAACCACTGCTTTTTGCCCTCCCCGCGTTTCGTCG
CTACGCGGTTTTGAGCAGTCTAATCCTCTGGGCTGACAGGCAAGGGTCTG
GCTGGGCTCCTGCTCAAGGCTTCCCATGTGCTGTCGGGTACAATCCCTAT
CACTCAGATATAGTTCTACCGAAACCCCAACGGAAGCGGTTCGGTTCCAT
CGGCGTATGTTCTGGCGGCTTCTGTTGTGCCTATACAACCCCCTGGACGA
ATGTCACGCTGGCTTCAGACTGGCTTCAGAATGGCTTCAGAATTAAAAGA
GTGTGTATTTGCCGTAACGCTCGATTCTGCCATAGTCATCGCCATAGTCA
TCGTTTTGCGTATATTCGTAGCCGAAGATGTGCTTTTGGAATTTTGCCCT
TGAGGAGAGGTACGCTCTACACTACTAGTCGTGATTGACGCCTGAGTTGT
TCATTTTGTGTCATGTTTCTTACGCCGATGTATGTCCGTCTCGGCATATT
ACTCTTAGCAGACAGCTACGAACTGTACCAGGTAGCTGCTACATGGGAGC
CTAGTTAGCTACATGGGGGACTAGCAAGAGTAATACTTGACAACACGTCT
TTCTTTGAGATGATTTGGTTAGTTGCTGTTGCCTGTGTCTCACAATCGCT
GCTTTTCGATATATATATATATATATATTTTATGTCATTTCTCGATA
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Coding sequence (CDS) from alignment at H-elongata_contig19154:2562..5508+

>mRNA_H-elongata_contig19154.5299.1 ID=mRNA_H-elongata_contig19154.5299.1|Name=mRNA_H-elongata_contig19154.5299.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig19154:2562..5508+ (Himanthalia elongata Himel1 dioecious)
ATGCCGGAGAGCTTGTGCAATCTTTACACGTTGCGGCACCTCAATCTTTC
TTACAACTCTGGGCTGAGGGGCTGGATCCCGGAGGGACTTGGGGACCTTG
TCAATCTCAAAACCCTTCACTTGTACAGTGCTCTGCTTACAGATGCCGGA
GAGCTTGTGCAATCTTTACACGTTGCGGCACCTCAATCTTTCTTACAACT
CTGGGCTGAGGGGCTGGATCCCGGAGGGACTTGGGGACCTTGTCAATCTC
AAAACCCTTCACTTGTACAGTGCTCTGCTTACAGGCGCCATACCAGAGTC
ACTGGGGCAACTAAGAAGCTTGGAAGAATTGTTCCTACACGGCAACCGCC
TCACCGGCGAGATTCCGCTGTCTCTCGGCAACCTCAGGCGGCTGCGAAAG
CTTTTCTTGAACTCGAATGATCTAATAGGGCCAGTGCCATCGGAGCTGGG
ACGCTTATCATCCCTCGACACTCTGAATCTGAGCTGGAATAACTTGCGCG
GAGTGATTCCGGCGAGCATTGGGGCCCTGGCGCCATACCAGAGTCACTGG
GGCAACTAAGAAGCTTGGAAGAATTGTTCCTACACGGCAACCGCCTCACC
GGCGAGATTCCGCTGTCTCTCGGCAACCTCAGGCGGCTGCGAAAGCTTTT
CTTGAACTCGAATGATCTAATAGGGCCAGTGCCATCGGAGCTGGGACGCT
TATCATCCCTCGACACTCTGAATCTGAGCTGGAATAACTTGCGCGGAGTG
ATTCCGGCGAGCATTGGGGCCCTGGAAAACCTTCGGCTCTTTTCTATCGA
GGGAAACGAACAGCTCATCCTCGCGCACGATACCGACTTCGGTGGAAGGG
AAAACCTTCGGCTCTTTTCTATCGAGGGAAACGAACAGCTCATCCTCGCG
CACGATACCGACTTCGGTGGAAGGGGTGCCTTTGGCACTGGTCGGTCGGC
GACAACGTGGGAAGCGGCCGAGGAAGCCATGGAGCTGCACACAGCCTCAC
ATTTCGGTGCTGGAGCGGGTGCCTTTGGCACTGGTCGGTCGGCGACAACG
TGGGAAGCGGCCGAGGAAGCCATGGAGCTGCACACAGCCTCACATTTCGG
TGCTGGAGCGTCTAATCCTCTGGGCTGATCTAATCCTCTGGGCTGA
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