prot_H-elongata_contig19154.5299.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig19154.5299.1
Unique Nameprot_H-elongata_contig19154.5299.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length191
Homology
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BLAST of mRNA_H-elongata_contig19154.5299.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 8.060e-26
Identity = 154/184 (83.70%), Postives = 165/184 (89.67%), Query Frame = 0 
Query:    1 MPESLCNLYTLRHLNLSYNSGLRGWIPEGLGDLVNLKTLHLYSALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLFSIEGNEQLILAHDTDFGGRGAFGT-GRSATTWEAAEEAMELHTASHFGA 183
            MPESLCNLY+L+HLNLSYN GLRGWIPEGLGDL+ LKTLHLYSAL  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    IEGNEQL+L+ ++ +GG+  F T G S   WEAAEEA+ELHTA+H GA
Sbjct:   93 MPESLCNLYSLQHLNLSYNFGLRGWIPEGLGDLIKLKTLHLYSALLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGNEQLVLSRNSHYGGQATFETSGSSNQAWEAAEEAIELHTAAHLGA 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19154.5299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJ86_ECTSI8.060e-2683.70Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..145
e-value: 1.5E-40
score: 141.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 35..94
e-value: 5.7E-7
score: 29.2
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 11..22
e-value: 0.73
score: 10.6
coord: 108..128
e-value: 0.18
score: 12.5
NoneNo IPR availablePANTHERPTHR27008:SF210coord: 2..125
coord: 84..140
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 84..140
NoneNo IPR availablePANTHERPTHR27008FAMILY NOT NAMEDcoord: 2..125
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19154contigH-elongata_contig19154:3054..4897 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19154.5299.1mRNA_H-elongata_contig19154.5299.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig19154 2562..5508 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig19154.5299.1 ID=prot_H-elongata_contig19154.5299.1|Name=mRNA_H-elongata_contig19154.5299.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
MPESLCNLYTLRHLNLSYNSGLRGWIPEGLGDLVNLKTLHLYSALLTGAI
PESLGQLRSLEELFLHGNRLTGEIPLSLGNLRRLRKLFLNSNDLIGPVPS
ELGRLSSLDTLNLSWNNLRGVIPASIGALENLRLFSIEGNEQLILAHDTD
FGGRGAFGTGRSATTWEAAEEAMELHTASHFGAGASNPLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt