mRNA_H-elongata_contig19147.5296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19147.5296.1
Unique NamemRNA_H-elongata_contig19147.5296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: D8LPT2_ECTSI (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPT2_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 1.320e-99
Identity = 158/208 (75.96%), Postives = 185/208 (88.94%), Query Frame = 3
Query:   12 IMEDTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWN 635
            I  D ECQKALIAKLLGYL+ILGSLT+KAPQI+KI+ AKSVDGLAPSS+YSDL+IYIVNAVYHIV+GSPFSAYGEIMTIL QN+ +VLL+W YMK+RPS+LGI  ++A F+ T   CA L  + ++LLP SNLPLI+VAKVPQI+IN  NGHTGQLA++TT+LNFVGA++RILTTIQEVGWD+GLL MHGLSSFLNGVLALQ+ LYWN
Sbjct:   19 IASDFECQKALIAKLLGYLLILGSLTVKAPQISKIMVAKSVDGLAPSSIYSDLIIYIVNAVYHIVSGSPFSAYGEIMTILVQNIVIVLLLWYYMKNRPSALGIVGLMAVFLGTTVGCATLKMEHLMLLPYSNLPLIVVAKVPQIMINHDNGHTGQLASVTTMLNFVGATIRILTTIQEVGWDLGLLWMHGLSSFLNGVLALQVVLYWN 226          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A835YUU5_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU5_9STRA)

HSP 1 Score: 227 bits (579), Expect = 5.780e-69
Identity = 123/222 (55.41%), Postives = 159/222 (71.62%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYM--KDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
            + EC KA+ AK LGY +I  S  IKAPQIAKIV +KSV GL+PS+ YS+ V YI+NA+YHI  GSP SAYGE++TIL QN+ LV+L+W YM  ++RP+  G A +I GF   A  CA LP + + LLPL+NLPLI+VA++PQI+   +NGHTGQLA IT  +N  G ++R+LTTIQEVGWD GLL  +G S   NG+L +QI  YW  T+++   E  KK A
Sbjct:   30 NVECLKAVGAKALGYAMIAASFAIKAPQIAKIVGSKSVVGLSPSAFYSETVAYIINAMYHIARGSPLSAYGEVLTILVQNLVLVVLLWAYMTPQERPALAGRAFVIMGFATIAVGCAALPPEYLHLLPLTNLPLILVARIPQILTIYQNGHTGQLAFITMAMNVAGTALRMLTTIQEVGWDKGLLIQYGTSLVFNGILFVQILYYWGATNKFVDSEDKKKVA 251          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A7S2V5B2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B2_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.260e-53
Identity = 99/210 (47.14%), Postives = 142/210 (67.62%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEW 650
            + +C K   +KLLGY + LGSL +K PQI KI+ +KSV+GL+PSS YS+  +Y++  +YH + GSP+SA+GE+++I  QN+ LV L+WRY K         +++A F A A AC   P  L  L+PL+N+P+I++A+VPQI++N KNGHTGQLA IT  +N  G+  R+LTTI EVG D GL+  + + S LN  + LQ+  YW  T  +
Sbjct:   30 EEQCLKRSFSKLLGYALSLGSLGLKLPQILKILKSKSVEGLSPSSFYSEEALYVLCLMYHFIIGSPWSAFGEVISIFVQNLVLVGLLWRYAKPTIGLTSRLLVLAVFAAIAAACWYCPPSLQPLIPLANVPVIVMARVPQILLNFKNGHTGQLAFITVCMNAFGSLSRVLTTIIEVGGDWGLVLSYSVGSSLNTFIFLQMLYYWKNTENF 239          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A8K1CVN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVN7_PYTOL)

HSP 1 Score: 171 bits (432), Expect = 4.290e-47
Identity = 93/219 (42.47%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDR-PSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
            +T+C K +++KLLGY +I GS  +K PQI KI+ AK V GL P+S Y ++++Y+   VY+++ G P S +GE + IL QN+ LVLL+W Y   + P S  +A+++  FVA      + P +L  +L  + +P+ IVA++PQ++ N K GHTGQLA +T +LNF G   R+ TT+QE G  + L+ + G++  LNG+L LQ+ L+W  T++  A  A KK
Sbjct:   31 NTDCIKFVVSKLLGYAIITGSFVLKLPQILKIIGAKDVTGLTPTSFYMEVLLYVSGTVYNVLKGYPVSTWGENLVILVQNIILVLLLWAYSTPKIPISTRLALVVT-FVAVTTGMLLTPPELQWVLVSAGIPVTIVARIPQVISNFKQGHTGQLAFVTLVLNFGGTIARLFTTLQETGDQVQLIGL-GVAIVLNGLLVLQVLLFWGATNKALAKAAKKK 247          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A6G0XK20_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK20_9STRA)

HSP 1 Score: 170 bits (431), Expect = 5.860e-47
Identity = 95/219 (43.38%), Postives = 138/219 (63.01%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKK 677
              EC KA+++K+LGYL+ILGS  +K PQI KIVAA +V GL+PSS Y ++V ++ + +Y+++ G P S +GE   IL QN+ LV+L+W Y    P +  +  ++  FV        LP +   +LP +++PL + A++PQI+ N + GHTGQLA +T  LNF G++ R+ TT+QE G  + LL    +S  LNG L  QI +YW  T    A EA KKK
Sbjct:   32 QVECGKAVVSKVLGYLIILGSFVLKLPQILKIVAAGNVAGLSPSSFYLEVVTFLASVIYNVIRGYPISTWGESAVILVQNVILVVLLWYY-SSAPKTTQLLGVVT-FVGLGAGMYHLPSEFDWVLPSASIPLSVAARIPQIISNFRQGHTGQLAFLTLFLNFGGSAARLFTTLQETGDQVVLLGF-AISMLLNGTLLTQILIYWKATDAVLAKEAQKKK 247          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A485KEC0_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.260e-46
Identity = 99/221 (44.80%), Postives = 139/221 (62.90%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEW--SAVEAHKKK 677
              +C KA+++K+LGYL+ILGS  +K PQI KIVAA +V GL PSS Y +++ +  + VY+++ G P S +GE +TIL QN+ LV ++W Y K   S+  +   +A FVA       LP +   +LP S++PL ++A++PQI  N K GHTGQLA IT  LNF G++ R+ TT+QE G  + LL    +S  LNG L  QI +YW  T      A +A KKK
Sbjct:   32 QVDCGKAVVSKVLGYLIILGSFILKVPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVIRGYPISTWGESLTILIQNIILVAMLWVYSKAPASTQLLG--VATFVALGAGMLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETGDQVVLLGFL-ISMLLNGTLIAQILIYWKATDAALAKAKDAEKKK 249          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A024TCH2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCH2_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.250e-45
Identity = 97/216 (44.91%), Postives = 135/216 (62.50%), Query Frame = 3
Query:   27 ECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
            EC KA+++KLLGYL+ILGS  +K PQI KIVAA +V GL PSS Y +++ +  + VY+++ G P S++GE   IL QN  LVLL+W Y     S+  +   +  FVA       LP +   LLP +++PL ++A++PQI+ N + GHTGQLA +T  LNF G++ R+ TT+QE G D  +L    +S  LNG L  QI LYW+ T    A    KK
Sbjct:   34 ECGKAVVSKLLGYLIILGSFILKLPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVLKGYPISSWGESAVILIQNAILVLLLWHYSGAAKSTQFLG--VVTFVALGAGMFYLPSEFNWLLPSASIPLSVMARIPQIMSNFQQGHTGQLAFLTLFLNFGGSAARLFTTLQETG-DQVVLFGFAISMLLNGTLLAQIGLYWSATEAAMAKVKAKK 246          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A5D6XZP8_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP8_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.450e-45
Identity = 96/219 (43.84%), Postives = 143/219 (65.30%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPS-SLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
            +  C K +++K LGY +I GSL +K PQI KI+ A+ V GL P+S Y ++++++ + VY+++ G P S +GE + IL QN+ LVLL+W Y+  + + S  +A+++A    TAGA  + P +   LL  + +P+ IVA++PQIV N K GHTGQLA +T +LNF G+  RI TT+QE G  + LL   G+   LNG L LQ+ L+W  T++  AV A KK
Sbjct:   54 NVACLKLVVSKALGYAIIAGSLVLKLPQILKILRARDVTGLTPASFYLEVLLFVSSTVYNVLKGYPVSTWGENLIILAQNIVLVLLLWTYVTPKIAYSTRLALVVAFVAVTAGAL-LTPPEYQWLLASAGIPVSIVARIPQIVSNFKQGHTGQLAFVTLVLNFGGSVARIFTTLQETGDPVQLLGF-GVGILLNGTLVLQVLLFWGATNKALAVAAKKK 270          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: G4ZVB4_PHYSP (Mannose-P-dolichol utilization defect 1 protein homolog n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZVB4_PHYSP)

HSP 1 Score: 165 bits (417), Expect = 1.300e-44
Identity = 95/221 (42.99%), Postives = 141/221 (63.80%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDR-PSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
            + EC KA+++K L Y +I GSL +K PQI KI+ AK V GL PS+ Y ++V+Y+ + +Y+++ G P S +GE + IL QN+ LVLL+W +   + P S    +++  F A AG    +P +   LL  + +P+ IVA+ PQI+ N K GHTGQLA IT +LN  G+  R+ TT+QE G D   ++  G++  LNG L LQ+ L+W  T++ +  EA KKKA
Sbjct:   53 NVECIKAVVSKALSYAIITGSLILKLPQILKILGAKDVTGLTPSAFYMEVVLYLSSTIYNLLRGYPLSTWGENLVILAQNVILVLLLWAFYTPKIPVSTRFGLVVV-FAAMAGGMLSIPDEYQWLLASAGIPVSIVARTPQILSNFKQGHTGQLALITLVLNLAGSIARLFTTLQETG-DPVQVAGFGVTIVLNGTLVLQVLLFWGATNK-ALAEASKKKA 270          
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A662X041_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X041_9STRA)

HSP 1 Score: 162 bits (411), Expect = 9.880e-44
Identity = 91/220 (41.36%), Postives = 139/220 (63.18%), Query Frame = 3
Query:   21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
            + EC KA+++K L Y +I GSL +K PQI KI+ AK V GL P+S Y ++V+Y+ + +Y+++ G P S +GE + IL QN+ LVLL+W +   +  +     ++ GF A       +P +   LL  + +P+ IVA++PQI+ N K GHTGQLA IT +LN  G+  R+ TT+QE G D   ++  G++  LNG L LQ+ L+W  T++ +  +A KKKA
Sbjct:   53 NVECLKAVVSKALSYAIITGSLILKLPQILKILGAKDVTGLTPTSFYMEVVLYLSSTIYNMLRGYPVSTWGENLVILAQNVVLVLLLWAFYVPKIPATSRLGLVLGFAALGAGMFAIPPEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLAIITLVLNLGGSIARLFTTMQETG-DPVQIAGFGVAILLNGTLVLQVLLFWGATNK-ALAQASKKKA 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT2_ECTSI1.320e-9975.96Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A835YUU5_9STRA5.780e-6955.41Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A7S2V5B2_9STRA1.260e-5347.14Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A8K1CVN7_PYTOL4.290e-4742.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XK20_9STRA5.860e-4743.38Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A485KEC0_9STRA1.260e-4644.80Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A024TCH2_9STRA1.250e-4544.91Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A5D6XZP8_9STRA2.450e-4543.84Mannose-P-dolichol utilization defect 1 protein ho... [more]
G4ZVB4_PHYSP1.300e-4442.99Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A662X041_9STRA9.880e-4441.36Mannose-P-dolichol utilization defect 1 protein ho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19147contigH-elongata_contig19147:932..4739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.4
Seed ortholog evalue2.1e-80
Seed eggNOG ortholog2880.D8LPT2
KEGG koko:K09660
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMannose-P-dolichol utilization defect 1 protein
Ec32 orthologEc-18_002360.1
Exons5
Model size1226
Cds size669
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.4987657-UTR-H-elongata_contig19147:931..14741622930093.4987657-UTR-H-elongata_contig19147:931..1474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19147 932..1474 -
1691679277.6908212-UTR-H-elongata_contig19147:931..14741691679277.6908212-UTR-H-elongata_contig19147:931..1474Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19147 932..1474 -
1622930093.5943494-UTR-H-elongata_contig19147:4725..47391622930093.5943494-UTR-H-elongata_contig19147:4725..4739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19147 4726..4739 -
1691679277.7589722-UTR-H-elongata_contig19147:4725..47391691679277.7589722-UTR-H-elongata_contig19147:4725..4739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19147 4726..4739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.5177147-CDS-H-elongata_contig19147:1474..16121622930093.5177147-CDS-H-elongata_contig19147:1474..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 1475..1612 -
1691679277.7074165-CDS-H-elongata_contig19147:1474..16121691679277.7074165-CDS-H-elongata_contig19147:1474..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 1475..1612 -
1622930093.5336046-CDS-H-elongata_contig19147:2191..22961622930093.5336046-CDS-H-elongata_contig19147:2191..2296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 2192..2296 -
1691679277.717348-CDS-H-elongata_contig19147:2191..22961691679277.717348-CDS-H-elongata_contig19147:2191..2296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 2192..2296 -
1622930093.5567594-CDS-H-elongata_contig19147:2985..32021622930093.5567594-CDS-H-elongata_contig19147:2985..3202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 2986..3202 -
1691679277.7277758-CDS-H-elongata_contig19147:2985..32021691679277.7277758-CDS-H-elongata_contig19147:2985..3202Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 2986..3202 -
1622930093.5726392-CDS-H-elongata_contig19147:3500..36191622930093.5726392-CDS-H-elongata_contig19147:3500..3619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 3501..3619 -
1691679277.7397885-CDS-H-elongata_contig19147:3500..36191691679277.7397885-CDS-H-elongata_contig19147:3500..3619Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 3501..3619 -
1622930093.5838304-CDS-H-elongata_contig19147:4635..47251622930093.5838304-CDS-H-elongata_contig19147:4635..4725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 4636..4725 -
1691679277.750347-CDS-H-elongata_contig19147:4635..47251691679277.750347-CDS-H-elongata_contig19147:4635..4725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19147 4636..4725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19147.5296.1prot_H-elongata_contig19147.5296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19147 1475..4725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19147.5296.1

>prot_H-elongata_contig19147.5296.1 ID=prot_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp
MEDTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYS
DLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSL
GIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNG
HTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLAL
QIALYWNRTSEWSAVEAHKKKA*
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mRNA from alignment at H-elongata_contig19147:932..4739-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19147.5296.1 ID=mRNA_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3808bp|location=Sequence derived from alignment at H-elongata_contig19147:932..4739- (Himanthalia elongata Himel1 dioecious)
GCGTGAACGTGATCATGGAGGACACAGAGTGCCAAAAGGCGTTGATCGCC AAGTTGCTCGGCTACCTGGTGATCCTCGGGAGTCTAACGATCAAGGCGCC GCAGGTGAAAAAGAGGGCACAAATAGCTTGCGAGCCCTACCCCACTTTGA CTTCCGCGCCACTCAAAAGCGACTGTTGGCCATAAAGCTCTAGATACGCT ACAGACAGCCCATTGGCAGCACACACACCGGGAGTACAGTGGAATGGGAA TATCCCTCGAGGCCGCAGACGGGACGGAGGGCTGTGTTGCAAATAAGTGG GATTGGTTACCTGGCACGTTCAACGGCCGCGCCCCATCGGCAGAATATCT GGGGCGAGACTGTCAGGCCGCCTGCCACAAGAATGGCCCTAAAGCTAGGA TTACCTTGCGCCGCGTTTCTATATAATTTTCCGAAGGTACCGCAATGAAC CACAATGTACCGCAATGTCGGTGGGTTGTGGAATGAGAGTAAGGTACCGC AATGTAGTTTTCCTGCCGTCCCTGTGCAGTGATCTCCAGGGGGGCGGGGG GGCTATAGTGGGGGGGTTAATCAGGCAAGGTCGACACTGTTTGGTACGTC CAGGCTTCGGATTTACGGGGGAAAATGTCGTGCCCTGCAGTTAGAGGGTA CTGCACCCTTATTTATTTCAAGAGGGCAAGATACATAGGACCCTCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCGCGGCGCCCCCCACGTTTGGTGTT TTGTAAAAGGGGGGGGGGGACGGCGCCGGAAGCTTCTNNNNNNNNNNCTT ATTTATTTCAAGAGGGCAAGATACATAGGACCCTCCCCTCCGCCCCCCCC CCTCGCACCCACCCGGAGGCGCCACAAGGTTTGGTTGTTGTAAAAGAGGA GGGAGAGAGCGAGCGATGATCTTCATGTCAATCTATCTATCGATGCGTCC TTTCCCTTCTACAAGGCGCGAAGATTGGTCTAGGGGTTTCGTTCGAAGCA CGCGCATGCTGGCTAGCTCTATCGATCGAGTGTCGTCGCGCGTCATAGTT CAATCGCGTGAGCTTGTTCTGTGGCTGGTTGTGGGGGGGGGGGTGCTTGC TCGCGCTTCTGCCTCTTTAGATCGCCAAGATCGTGGCCGCGAAGAGTGTT GACGGATTGGCTCCGTCCTCTATGTACAGTGACCTGGTGATCTACATCGT TAATGCCGTCTATCACATTGTCACCGGTTCGCCGTTTAGGTGAGCGTAGG ATCTTGCGTGTCTCCTTGACGGCAAAATTATAAATGAGGCGTTTTTTCTT TTTGTTCAAAACGATGCGCCCTCTCCCTGGAAATGATAGAATCCCACTCC GTGGTGACTTTTCAGCGATGCGTGCGTGCGTGTGTGCGTATCTGGTCGAG ACTCCTCACAGCGGTCGATCGTTCGTTGTGAAGAAGTGTGTGCGTGGAAA CCCACGACCCGCGCATAAGCGGTCGCGTCTTTTTTAAGAGCGGAACCCGT CTTTTGTCCCCTTTCGGGGGGGGTTGTTGTCCACCAGTGCGTATGGCGAG ATCATGACGATTCTTTTCCAGAACATGTTCTTGGTCCTGCTGATGTGGCG TTACATGAAGGATCGACCGTCCAGCCTCGGCATCGCGATGATGATCGCGG GTTTCGTCGCCACGGCGGGGGCGTGTGCAATGCTCCCCGGCGACTTGATG GTGCTGCTGCCCCTGAGCAATCTGCCTCTGATCATCGTCGCGAAGGTCCC ACAGGCAAGCGAGAAACGCCCAGAAATCCAGCGGAGTTCCAATAAACCTG GCAGGCCGCCTTTCTTCTCTTTACACTCCCTTCCTCCGCCTTGGTTATGC GCCGTTGCGGCTTTTCGCTGGAGATTTCCTTCCGCTCGGGCAGAATCTTT CGACGACGCGGCGAAGCGCGTCGAAAAAGTCGGCGGCAGCGATGGACGCT AATTTTCTCTCCCCTTCAGACCACCGTCGCGAGAGACGACATACAGTAAA ATCAAAGGCGGTTCATCCCGCGACTCGTGATTGCCTCACCCTTGACCCCC TCGTATCTATAGTTGTAATAGTCATGTTTTGCACAAAAATAGCGTGCCCC GTCTCACCTGTTGCGTTGACAGACTTTGCGTGAGTACTTTTTGGACTGAG ATTAGAAGGGGCATCCTCTCCCCCCCCAAAAAAATGGGAAGGGGACGATA ACATCCTGCACAACCATCCAACAAAGAATGCGTGAACCTCTCCTCGCATC CTATTGGCCGCAATTGGTATAATCTAGCCCAACCTAGGAGCGTATCTCGT CATGACGGCTAGGAGTACAGCGGGGGTGGCACGGCCTTCCGCTACTGTAG CCTTGCGTGCGCTACATGAGTCCCTCTTCGCGTTTCGTTTGGTATAGCGT GTGCTCCTTCCGCCCTTTACTATCCCCGTCACCACCCCTGCAGATAGTTA TCAACCTCAAGAACGGGCACACCGGGCAGCTGGCGGCGATTACTACCTTG CTAAACTTTGTAGGAGCGAGCGTGCGGATACTCACCACGATACAAGAGGT GTGGCCGGCGACCATTCCTCAGTCGCTCCCGCTCACCCGCCTTCTGTTGC CGCGCAATGCCGCGTCGAGCGCTCGGCGGCGCGGATATATCACAGATCGC TTGACTTATGGCATTTTGACCGACGGGAAGCAATCAAAGTACTACAACCG TGCTTTTGTAGCCAATAAAAATGTTGATGGTTTTTATCCTCAAGGCACAC CAGCCTTGGCCGGCGGGTGGTTTTTGTCGTATGAACGGATGCAGGGCGAG GGGAAGACTTGTCCACCCGCAAAGGGGTCCCCATCGCAACCCCCAGAAGT CGACCGTATGAACAAAGACACAAGCGGTGTCTCGTTCCCGCCGTCACGCG AGGGGCTTTCCCTGTCCGCCGCCGCCACCGACTCCGCGCGCGGAATTTTC TCCGAAATTGCAACGCCCCCGGATGGTCATGTAACACGTGTTGCGTTTCT TCCCCGTGTCTCATACACGACGTGGTGGCCCCTCCTCTGCCTTTTACATG TTTCCTCTCCTCCTGCGTCCCCTGTTTTCCGGTGCGCCGATATGTTGGGT CCTTTGAATGGCGTTCGCCACGACTAGGTCGGATGGGACATGGGCCTGCT TTCGATGCACGGTCTGTCTTCCTTTTTGAACGGAGTCTTGGCTCTGCAAA TTGCGCTCTATTGGAATCGCACCTCTGAGTGGTCTGCGGTAGAGGCACAC AAGAAAAAGGCATGACCGCCTGCACGGCGTGGCGTGGTGTGGGTGGCGGT AGCTGGTGCGACTGCTGCCGCGGGGTAGGAGAGCTTCGCGCGGCGATTCG CGATTCGCTGTCGCCTTTTCATCGGCACGCACGTCTGTGTTCGAATCAGT GCTGTTTTTTATGTTGCTGTTGATTTTTTATTGGAGCCTACAGCTGTAGT CCAGGGGAGCTGCTTGAGTGGTCCAAGAAGCAGCTTTATGAGGCATAAAG CCGCCGCATGTTGGTTGCTCTCAAGGGCTCTACATTGAGTAACGAGTCAA AGAAAATCCGCCAGCAGGGGCACCGCGTTGGGGTGAGGAAGAGCGCTATG GCTGGAGATCCACATGGCAGCACGCGCGTTTCGGCCAGGTTAAGATCCTC GTAGGAGCCCTCCCCGTTGGTGGTGTCGTGATGATTACCGCCAGCGCTTC TTTCCCCGAGAGGCCGTCGATTTTCCGTCACGTGCCGTAGCTCTTGTCAA GAGCTGCACCGACATGTTCAGGAGGGGACAATGTTAGACTTATGCCAAGA CTGCAGCC
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Coding sequence (CDS) from alignment at H-elongata_contig19147:932..4739-

>mRNA_H-elongata_contig19147.5296.1 ID=mRNA_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig19147:932..4739- (Himanthalia elongata Himel1 dioecious)
ATGGAGGACACAGAGTGCCAAAAGGCGTTGATCGCCAAGTTGCTCGGCTA
CCTGGTGATCCTCGGGAGTCTAACGATCAAGGCGCCGCAGATGGAGGACA
CAGAGTGCCAAAAGGCGTTGATCGCCAAGTTGCTCGGCTACCTGGTGATC
CTCGGGAGTCTAACGATCAAGGCGCCGCAGATCGCCAAGATCGTGGCCGC
GAAGAGTGTTGACGGATTGGCTCCGTCCTCTATGTACAGTGACCTGGTGA
TCTACATCGTTAATGCCGTCTATCACATTGTCACCGGTTCGCCGTTTAGA
TCGCCAAGATCGTGGCCGCGAAGAGTGTTGACGGATTGGCTCCGTCCTCT
ATGTACAGTGACCTGGTGATCTACATCGTTAATGCCGTCTATCACATTGT
CACCGGTTCGCCGTTTAGTGCGTATGGCGAGATCATGACGATTCTTTTCC
AGAACATGTTCTTGGTCCTGCTGATGTGGCGTTACATGAAGGATCGACCG
TCCAGCCTCGGCATCGCGATGATGATCGCGGGTTTCGTCGCCACGGCGGG
GGCGTGTGCAATGCTCCCCGGCGACTTGATGGTGCTGCTGCCCCTGAGCA
ATCTGCCTCTGATCATCGTCGCGAAGGTCCCACAGTGCGTATGGCGAGAT
CATGACGATTCTTTTCCAGAACATGTTCTTGGTCCTGCTGATGTGGCGTT
ACATGAAGGATCGACCGTCCAGCCTCGGCATCGCGATGATGATCGCGGGT
TTCGTCGCCACGGCGGGGGCGTGTGCAATGCTCCCCGGCGACTTGATGGT
GCTGCTGCCCCTGAGCAATCTGCCTCTGATCATCGTCGCGAAGGTCCCAC
AGATAGTTATCAACCTCAAGAACGGGCACACCGGGCAGCTGGCGGCGATT
ACTACCTTGCTAAACTTTGTAGGAGCGAGCGTGCGGATACTCACCACGAT
ACAAGAGATAGTTATCAACCTCAAGAACGGGCACACCGGGCAGCTGGCGG
CGATTACTACCTTGCTAAACTTTGTAGGAGCGAGCGTGCGGATACTCACC
ACGATACAAGAGGTCGGATGGGACATGGGCCTGCTTTCGATGCACGGTCT
GTCTTCCTTTTTGAACGGAGTCTTGGCTCTGCAAATTGCGCTCTATTGGA
ATCGCACCTCTGAGTGGTCTGCGGTAGAGGCACACAAGAAAAAGGCATGA
GTCGGATGGGACATGGGCCTGCTTTCGATGCACGGTCTGTCTTCCTTTTT
GAACGGAGTCTTGGCTCTGCAAATTGCGCTCTATTGGAATCGCACCTCTG
AGTGGTCTGCGGTAGAGGCACACAAGAAAAAGGCATGA
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