mRNA_H-elongata_contig19147.5296.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: D8LPT2_ECTSI (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPT2_ECTSI) HSP 1 Score: 305 bits (782), Expect = 1.320e-99 Identity = 158/208 (75.96%), Postives = 185/208 (88.94%), Query Frame = 3
Query: 12 IMEDTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWN 635
I D ECQKALIAKLLGYL+ILGSLT+KAPQI+KI+ AKSVDGLAPSS+YSDL+IYIVNAVYHIV+GSPFSAYGEIMTIL QN+ +VLL+W YMK+RPS+LGI ++A F+ T CA L + ++LLP SNLPLI+VAKVPQI+IN NGHTGQLA++TT+LNFVGA++RILTTIQEVGWD+GLL MHGLSSFLNGVLALQ+ LYWN
Sbjct: 19 IASDFECQKALIAKLLGYLLILGSLTVKAPQISKIMVAKSVDGLAPSSIYSDLIIYIVNAVYHIVSGSPFSAYGEIMTILVQNIVIVLLLWYYMKNRPSALGIVGLMAVFLGTTVGCATLKMEHLMLLPYSNLPLIVVAKVPQIMINHDNGHTGQLASVTTMLNFVGATIRILTTIQEVGWDLGLLWMHGLSSFLNGVLALQVVLYWN 226
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A835YUU5_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU5_9STRA) HSP 1 Score: 227 bits (579), Expect = 5.780e-69 Identity = 123/222 (55.41%), Postives = 159/222 (71.62%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYM--KDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
+ EC KA+ AK LGY +I S IKAPQIAKIV +KSV GL+PS+ YS+ V YI+NA+YHI GSP SAYGE++TIL QN+ LV+L+W YM ++RP+ G A +I GF A CA LP + + LLPL+NLPLI+VA++PQI+ +NGHTGQLA IT +N G ++R+LTTIQEVGWD GLL +G S NG+L +QI YW T+++ E KK A
Sbjct: 30 NVECLKAVGAKALGYAMIAASFAIKAPQIAKIVGSKSVVGLSPSAFYSETVAYIINAMYHIARGSPLSAYGEVLTILVQNLVLVVLLWAYMTPQERPALAGRAFVIMGFATIAVGCAALPPEYLHLLPLTNLPLILVARIPQILTIYQNGHTGQLAFITMAMNVAGTALRMLTTIQEVGWDKGLLIQYGTSLVFNGILFVQILYYWGATNKFVDSEDKKKVA 251
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A7S2V5B2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B2_9STRA) HSP 1 Score: 187 bits (476), Expect = 1.260e-53 Identity = 99/210 (47.14%), Postives = 142/210 (67.62%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEW 650
+ +C K +KLLGY + LGSL +K PQI KI+ +KSV+GL+PSS YS+ +Y++ +YH + GSP+SA+GE+++I QN+ LV L+WRY K +++A F A A AC P L L+PL+N+P+I++A+VPQI++N KNGHTGQLA IT +N G+ R+LTTI EVG D GL+ + + S LN + LQ+ YW T +
Sbjct: 30 EEQCLKRSFSKLLGYALSLGSLGLKLPQILKILKSKSVEGLSPSSFYSEEALYVLCLMYHFIIGSPWSAFGEVISIFVQNLVLVGLLWRYAKPTIGLTSRLLVLAVFAAIAAACWYCPPSLQPLIPLANVPVIVMARVPQILLNFKNGHTGQLAFITVCMNAFGSLSRVLTTIIEVGGDWGLVLSYSVGSSLNTFIFLQMLYYWKNTENF 239
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A8K1CVN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CVN7_PYTOL) HSP 1 Score: 171 bits (432), Expect = 4.290e-47 Identity = 93/219 (42.47%), Postives = 143/219 (65.30%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDR-PSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
+T+C K +++KLLGY +I GS +K PQI KI+ AK V GL P+S Y ++++Y+ VY+++ G P S +GE + IL QN+ LVLL+W Y + P S +A+++ FVA + P +L +L + +P+ IVA++PQ++ N K GHTGQLA +T +LNF G R+ TT+QE G + L+ + G++ LNG+L LQ+ L+W T++ A A KK
Sbjct: 31 NTDCIKFVVSKLLGYAIITGSFVLKLPQILKIIGAKDVTGLTPTSFYMEVLLYVSGTVYNVLKGYPVSTWGENLVILVQNIILVLLLWAYSTPKIPISTRLALVVT-FVAVTTGMLLTPPELQWVLVSAGIPVTIVARIPQVISNFKQGHTGQLAFVTLVLNFGGTIARLFTTLQETGDQVQLIGL-GVAIVLNGLLVLQVLLFWGATNKALAKAAKKK 247
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A6G0XK20_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XK20_9STRA) HSP 1 Score: 170 bits (431), Expect = 5.860e-47 Identity = 95/219 (43.38%), Postives = 138/219 (63.01%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKK 677
EC KA+++K+LGYL+ILGS +K PQI KIVAA +V GL+PSS Y ++V ++ + +Y+++ G P S +GE IL QN+ LV+L+W Y P + + ++ FV LP + +LP +++PL + A++PQI+ N + GHTGQLA +T LNF G++ R+ TT+QE G + LL +S LNG L QI +YW T A EA KKK
Sbjct: 32 QVECGKAVVSKVLGYLIILGSFVLKLPQILKIVAAGNVAGLSPSSFYLEVVTFLASVIYNVIRGYPISTWGESAVILVQNVILVVLLWYY-SSAPKTTQLLGVVT-FVGLGAGMYHLPSEFDWVLPSASIPLSVAARIPQIISNFRQGHTGQLAFLTLFLNFGGSAARLFTTLQETGDQVVLLGF-AISMLLNGTLLTQILIYWKATDAVLAKEAQKKK 247
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A485KEC0_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.260e-46 Identity = 99/221 (44.80%), Postives = 139/221 (62.90%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEW--SAVEAHKKK 677
+C KA+++K+LGYL+ILGS +K PQI KIVAA +V GL PSS Y +++ + + VY+++ G P S +GE +TIL QN+ LV ++W Y K S+ + +A FVA LP + +LP S++PL ++A++PQI N K GHTGQLA IT LNF G++ R+ TT+QE G + LL +S LNG L QI +YW T A +A KKK
Sbjct: 32 QVDCGKAVVSKVLGYLIILGSFILKVPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVIRGYPISTWGESLTILIQNIILVAMLWVYSKAPASTQLLG--VATFVALGAGMLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETGDQVVLLGFL-ISMLLNGTLIAQILIYWKATDAALAKAKDAEKKK 249
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A024TCH2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCH2_9STRA) HSP 1 Score: 167 bits (422), Expect = 1.250e-45 Identity = 97/216 (44.91%), Postives = 135/216 (62.50%), Query Frame = 3
Query: 27 ECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
EC KA+++KLLGYL+ILGS +K PQI KIVAA +V GL PSS Y +++ + + VY+++ G P S++GE IL QN LVLL+W Y S+ + + FVA LP + LLP +++PL ++A++PQI+ N + GHTGQLA +T LNF G++ R+ TT+QE G D +L +S LNG L QI LYW+ T A KK
Sbjct: 34 ECGKAVVSKLLGYLIILGSFILKLPQILKIVAAGNVAGLNPSSFYLEVITFQASVVYNVLKGYPISSWGESAVILIQNAILVLLLWHYSGAAKSTQFLG--VVTFVALGAGMFYLPSEFNWLLPSASIPLSVMARIPQIMSNFQQGHTGQLAFLTLFLNFGGSAARLFTTLQETG-DQVVLFGFAISMLLNGTLLAQIGLYWSATEAAMAKVKAKK 246
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A5D6XZP8_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP8_9STRA) HSP 1 Score: 167 bits (422), Expect = 2.450e-45 Identity = 96/219 (43.84%), Postives = 143/219 (65.30%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPS-SLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKK 674
+ C K +++K LGY +I GSL +K PQI KI+ A+ V GL P+S Y ++++++ + VY+++ G P S +GE + IL QN+ LVLL+W Y+ + + S +A+++A TAGA + P + LL + +P+ IVA++PQIV N K GHTGQLA +T +LNF G+ RI TT+QE G + LL G+ LNG L LQ+ L+W T++ AV A KK
Sbjct: 54 NVACLKLVVSKALGYAIIAGSLVLKLPQILKILRARDVTGLTPASFYLEVLLFVSSTVYNVLKGYPVSTWGENLIILAQNIVLVLLLWTYVTPKIAYSTRLALVVAFVAVTAGAL-LTPPEYQWLLASAGIPVSIVARIPQIVSNFKQGHTGQLAFVTLVLNFGGSVARIFTTLQETGDPVQLLGF-GVGILLNGTLVLQVLLFWGATNKALAVAAKKK 270
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: G4ZVB4_PHYSP (Mannose-P-dolichol utilization defect 1 protein homolog n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZVB4_PHYSP) HSP 1 Score: 165 bits (417), Expect = 1.300e-44 Identity = 95/221 (42.99%), Postives = 141/221 (63.80%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDR-PSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
+ EC KA+++K L Y +I GSL +K PQI KI+ AK V GL PS+ Y ++V+Y+ + +Y+++ G P S +GE + IL QN+ LVLL+W + + P S +++ F A AG +P + LL + +P+ IVA+ PQI+ N K GHTGQLA IT +LN G+ R+ TT+QE G D ++ G++ LNG L LQ+ L+W T++ + EA KKKA
Sbjct: 53 NVECIKAVVSKALSYAIITGSLILKLPQILKILGAKDVTGLTPSAFYMEVVLYLSSTIYNLLRGYPLSTWGENLVILAQNVILVLLLWAFYTPKIPVSTRFGLVVV-FAAMAGGMLSIPDEYQWLLASAGIPVSIVARTPQILSNFKQGHTGQLALITLVLNLAGSIARLFTTLQETG-DPVQVAGFGVTIVLNGTLVLQVLLFWGATNK-ALAEASKKKA 270
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Match: A0A662X041_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X041_9STRA) HSP 1 Score: 162 bits (411), Expect = 9.880e-44 Identity = 91/220 (41.36%), Postives = 139/220 (63.18%), Query Frame = 3
Query: 21 DTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSDLVIYIVNAVYHIVTGSPFSAYGEIMTILFQNMFLVLLMWRYMKDRPSSLGIAMMIAGFVATAGACAMLPGDLMVLLPLSNLPLIIVAKVPQIVINLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDMGLLSMHGLSSFLNGVLALQIALYWNRTSEWSAVEAHKKKA 680
+ EC KA+++K L Y +I GSL +K PQI KI+ AK V GL P+S Y ++V+Y+ + +Y+++ G P S +GE + IL QN+ LVLL+W + + + ++ GF A +P + LL + +P+ IVA++PQI+ N K GHTGQLA IT +LN G+ R+ TT+QE G D ++ G++ LNG L LQ+ L+W T++ + +A KKKA
Sbjct: 53 NVECLKAVVSKALSYAIITGSLILKLPQILKILGAKDVTGLTPTSFYMEVVLYLSSTIYNMLRGYPVSTWGENLVILAQNVVLVLLLWAFYVPKIPATSRLGLVLGFAALGAGMFAIPPEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLAIITLVLNLGGSIARLFTTMQETG-DPVQIAGFGVAILLNGTLVLQVLLFWGATNK-ALAQASKKKA 270 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19147.5296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19147.5296.1 >prot_H-elongata_contig19147.5296.1 ID=prot_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=223bp MEDTECQKALIAKLLGYLVILGSLTIKAPQIAKIVAAKSVDGLAPSSMYSback to top mRNA from alignment at H-elongata_contig19147:932..4739- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19147.5296.1 ID=mRNA_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3808bp|location=Sequence derived from alignment at H-elongata_contig19147:932..4739- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19147:932..4739- >mRNA_H-elongata_contig19147.5296.1 ID=mRNA_H-elongata_contig19147.5296.1|Name=mRNA_H-elongata_contig19147.5296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1338bp|location=Sequence derived from alignment at H-elongata_contig19147:932..4739- (Himanthalia elongata Himel1 dioecious)back to top |