mRNA_H-elongata_contig191459.5295.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE) HSP 1 Score: 115 bits (288), Expect = 5.740e-29 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 39 WGYYAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 203
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A2Z7CTV2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CTV2_9LAMI) HSP 1 Score: 112 bits (281), Expect = 1.040e-27 Identity = 62/175 (35.43%), Postives = 98/175 (56.00%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVP-TLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 522
W +F M IGF + K D V+ K + E++V ++++VDD+L +KD+ +DR LG F++KDM A +G I R+RK L + Q Y+ ++ +F +K + G LS + P+N EE + M K Y AVG++M+ + TRPD+A A+ ++RF NPG
Sbjct: 54 WYIRFDQFMEEIGFSRSKFDTCVYVKNMGTESQVYLMLYVDDMLIASKDRRELDRIKGLLGTEFEMKDMGAASRILGIDIKRNRKEGTLFLSQEAYISKVLNRFSMKDSKPVTVPLGPQFRLSVSQAPKNTEEIDYMNKVPYASAVGSVMYCMVCTRPDLAHAISVISRFMANPG 228
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 115 bits (289), Expect = 3.710e-27 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 182 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 346
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.240e-27 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 895 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1059
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.250e-27 Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ RKA+G++MW T +RPD++ A RAVAR P
Sbjct: 1004 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAP 1168
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.450e-27 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 1274 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1438
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.480e-27 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 1294 WGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1458
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 115 bits (289), Expect = 9.510e-27 Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD +A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 1437 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1601
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.570e-26 Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W + GF+Q KADP VFRK+VD ++++++VDDIL D+ + A L +F K++ + +++ G I RD A L+I Q Y++SMVE+F VK S+IPA G K E EE ++ R+A+G++MW T +RPD++ AVRAVAR P
Sbjct: 530 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 694
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.670e-26 Identity = 65/173 (37.57%), Postives = 100/173 (57.80%), Query Frame = 1
Query: 1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
W++ + +GF Q AD VFR + +G V ++VHVDDI + +++ D+F +L +K++ D ++Y G RD A LKI Q Y E + +F V+ G +IP G+ LS+ D + EE+ + +R+ +G+LMW T TRPDIA+AVRAVAR+C +P
Sbjct: 85 WHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 249 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig191459.5295.1 >prot_H-elongata_contig191459.5295.1 ID=prot_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVback to top mRNA from alignment at H-elongata_contig191459:1..522- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig191459.5295.1 ID=mRNA_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig191459:1..522- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig191459:1..522- >mRNA_H-elongata_contig191459.5295.1 ID=mRNA_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig191459:1..522- (Himanthalia elongata Himel1 dioecious)back to top |