mRNA_H-elongata_contig191459.5295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191459.5295.1
Unique NamemRNA_H-elongata_contig191459.5295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JRS6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS6_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.740e-29
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct:   39 WGYYAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 203          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A2Z7CTV2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CTV2_9LAMI)

HSP 1 Score: 112 bits (281), Expect = 1.040e-27
Identity = 62/175 (35.43%), Postives = 98/175 (56.00%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVP-TLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENPG 522
            W  +F   M  IGF + K D  V+ K +  E++V ++++VDD+L  +KD+  +DR    LG  F++KDM  A   +G  I R+RK   L + Q  Y+  ++ +F +K    +    G    LS +  P+N EE + M K  Y  AVG++M+ +  TRPD+A A+  ++RF  NPG
Sbjct:   54 WYIRFDQFMEEIGFSRSKFDTCVYVKNMGTESQVYLMLYVDDMLIASKDRRELDRIKGLLGTEFEMKDMGAASRILGIDIKRNRKEGTLFLSQEAYISKVLNRFSMKDSKPVTVPLGPQFRLSVSQAPKNTEEIDYMNKVPYASAVGSVMYCMVCTRPDLAHAISVISRFMANPG 228          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.710e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct:  182 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 346          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.240e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct:  895 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1059          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JQW4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQW4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.250e-27
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  RKA+G++MW  T +RPD++ A RAVAR    P
Sbjct: 1004 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVRKAIGSMMWVSTFSRPDVSFAARAVARHAHAP 1168          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.450e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct: 1274 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1438          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.480e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct: 1294 WGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1458          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 9.510e-27
Identity = 66/173 (38.15%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD +A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct: 1437 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 1601          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.570e-26
Identity = 66/173 (38.15%), Postives = 98/173 (56.65%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W       +   GF+Q KADP VFRK+VD    ++++++VDDIL    D+   +   A L  +F  K++ + +++ G  I RD  A  L+I Q  Y++SMVE+F VK  S+IPA  G     K        E EE  ++  R+A+G++MW  T +RPD++ AVRAVAR    P
Sbjct:  530 WGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAP 694          
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.670e-26
Identity = 65/173 (37.57%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 WNNKFCGDMPAIGFQQGKADPYVFRKVVDGETEVVMIVHVDDILAHAKDKATMDRFAAELG*RFKLKDMDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGVPTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVARFCENP 519
            W++     +  +GF Q  AD  VFR + +G   V ++VHVDDI +  +++   D+F  +L     +K++ D ++Y G    RD  A  LKI Q  Y E +  +F V+ G +IP   G+  LS+ D      + EE+  + +R+ +G+LMW  T TRPDIA+AVRAVAR+C +P
Sbjct:   85 WHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGL-KLSEFD------QDEEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASP 249          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191459.5295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRS6_9PHAE5.740e-2938.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z7CTV2_9LAMI1.040e-2735.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.710e-2738.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE9.240e-2738.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JQW4_9PHAE9.250e-2738.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE9.450e-2738.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE9.480e-2738.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE9.510e-2738.15Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5K164_9PHAE1.570e-2638.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLN0_9PHAE1.670e-2637.57Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191459contigH-elongata_contig191459:1..522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.3
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog4081.Solyc12g087800.1.1
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.4322703-CDS-H-elongata_contig191459:0..3181622930093.4322703-CDS-H-elongata_contig191459:0..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191459 1..318 -
1691679277.6567295-CDS-H-elongata_contig191459:0..3181691679277.6567295-CDS-H-elongata_contig191459:0..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191459 1..318 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.4492385-UTR-H-elongata_contig191459:318..5221622930093.4492385-UTR-H-elongata_contig191459:318..522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig191459 319..522 -
1691679277.6737945-UTR-H-elongata_contig191459:318..5221691679277.6737945-UTR-H-elongata_contig191459:318..522Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig191459 319..522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191459.5295.1prot_H-elongata_contig191459.5295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191459 1..318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191459.5295.1

>prot_H-elongata_contig191459.5295.1 ID=prot_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MDDAKYYIGSHITRDRKARELKIDQHLYVESMVEKFVVKKGSKIPAASGV
PTLSKADEPRNPEEKEEMRKFTYRKAVGALMWTVTMTRPDIASAVRAVAR
FCENPG
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mRNA from alignment at H-elongata_contig191459:1..522-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191459.5295.1 ID=mRNA_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig191459:1..522- (Himanthalia elongata Himel1 dioecious)
TGGAACAACAAGTTCTGCGGTGATATGCCGGCGATTGGATTTCAGCAGGG AAAGGCGGATCCGTACGTGTTCCGTAAGGTCGTTGATGGCGAGACGGAAG TGGTGATGATCGTTCACGTGGACGATATTCTTGCTCACGCCAAGGACAAA GCGACTATGGATAGATTCGCGGCTGAGCTCGGATAAAGGTTCAAATTGAA GGACATGGATGACGCCAAGTACTACATTGGCTCTCACATTACTAGGGACC GCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGTATGTGGAGTCGATG GTGGAAAAGTTCGTCGTCAAGAAGGGAAGCAAGATACCGGCTGCGTCGGG GGTGCCAACTCTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGG AGGAAATGAGAAAGTTTACATACAGGAAAGCAGTGGGGGCGCTTATGTGG ACAGTGACGATGACACGACCGGACATTGCGAGCGCAGTACGCGCTGTGGC CAGGTTCTGCGAAAACCCTGGG
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Coding sequence (CDS) from alignment at H-elongata_contig191459:1..522-

>mRNA_H-elongata_contig191459.5295.1 ID=mRNA_H-elongata_contig191459.5295.1|Name=mRNA_H-elongata_contig191459.5295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig191459:1..522- (Himanthalia elongata Himel1 dioecious)
ATGGATGACGCCAAGTACTACATTGGCTCTCACATTACTAGGGACCGCAA
GGCGCGCGAGCTGAAGATCGACCAACACTTGTATGTGGAGTCGATGGTGG
AAAAGTTCGTCGTCAAGAAGGGAAGCAAGATACCGGCTGCGTCGGGGGTG
CCAACTCTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGGA
AATGAGAAAGTTTACATACAGGAAAGCAGTGGGGGCGCTTATGTGGACAG
TGACGATGACACGACCGGACATTGCGAGCGCAGTACGCGCTGTGGCCAGG
TTCTGCGAAAACCCTGGGATGGATGACGCCAAGTACTACATTGGCTCTCA
CATTACTAGGGACCGCAAGGCGCGCGAGCTGAAGATCGACCAACACTTGT
ATGTGGAGTCGATGGTGGAAAAGTTCGTCGTCAAGAAGGGAAGCAAGATA
CCGGCTGCGTCGGGGGTGCCAACTCTCTCAAAGGCGGACGAGCCGCGGAA
CCCGGAGGAGAAGGAGGAAATGAGAAAGTTTACATACAGGAAAGCAGTGG
GGGCGCTTATGTGGACAGTGACGATGACACGACCGGACATTGCGAGCGCA
GTACGCGCTGTGGCCAGGTTCTGCGAAAACCCTGGG
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