mRNA_H-elongata_contig191400.5291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig191400.5291.1
Unique NamemRNA_H-elongata_contig191400.5291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A7S6UA18_9STRA (50S ribosomal protein L13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA18_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.190e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY
Sbjct:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A6B9TNL2_SARFS (50S ribosomal protein L13, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNL2_SARFS)

HSP 1 Score: 186 bits (473), Expect = 1.220e-58
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPSK +L+K+WYIIDA NKCLGRLATEI  +LRGK K+ + P Q+L   II+IN+ K+ V+GKK  QKVYFRHSG PGG T+ETF++LQ R+PERILEKA+KGMLPKN+LGR+ FKNL+VY
Sbjct:    1 MKDTFIPSKQNLKKQWYIIDAKNKCLGRLATEISILLRGKKKVIFTPTQNLGDSIIIINAEKIFVSGKKRTQKVYFRHSGSPGGKTIETFEDLQMRIPERILEKAIKGMLPKNRLGRKFFKNLRVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A7T8G5D9_SCYLO (50S ribosomal protein L13, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A7T8G5D9_SCYLO)

HSP 1 Score: 185 bits (470), Expect = 3.390e-58
Identity = 87/126 (69.05%), Postives = 108/126 (85.71%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTF+PSK +L+++WYIIDA +KCLGRLATE+  +LRGKNK  + PAQD+   II+IN++K++VTGKK  QK+YFRHSGRPGG T+E F+ LQ RLPERI+EKAVKGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFVPSKLNLKQQWYIIDAKDKCLGRLATEVSNLLRGKNKTIFTPAQDIGDYIIIINANKINVTGKKRSQKIYFRHSGRPGGKTVENFEELQLRLPERIIEKAVKGMLPKNRLGRKLFTKLKVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0F9Q3_9PHAE (Ribosomal protein L13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q3_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.130e-56
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPS+ +L+++WY+IDA NKCLGRLATE+  +LRGK K  + P+QD+   II+IN++K++VTGKK  +K+YFRHSGRPGG T+ETF++LQ R+PERILEKAV+GMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSQLNLKQQWYLIDAQNKCLGRLATEVSTLLRGKKKAIFTPSQDVGDYIIIINANKINVTGKKQNKKIYFRHSGRPGGKTIETFEDLQLRIPERILEKAVRGMLPKNRLGRKLFTKLKVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A0R6ME26_UNDPI (50S ribosomal protein L13, chloroplastic n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6ME26_UNDPI)

HSP 1 Score: 181 bits (458), Expect = 2.280e-56
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPSK  L+++WYIIDA +KCLGRLATE+  +LRGKNK  + P+QD+   II++N+S+++V+GKK  QK+YFRHSGRPGG T+E+F++LQ R+PERILEKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSKLDLKQQWYIIDAKDKCLGRLATEVSNLLRGKNKSIFTPSQDVGDYIIIVNASQINVSGKKRVQKLYFRHSGRPGGKTVESFEDLQIRIPERILEKAIKGMLPKNRLGRKLFTKLKVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0JZV9_9PHAE (Ribosomal protein L13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZV9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.590e-56
Identity = 84/126 (66.67%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPSK  L+++WYIIDA +KCLGRLAT++  +L GKNK  + PAQD+   II+ N+ K++VTGKK  QK+YFRHSGRPGG T+ETF++LQ R+PERI+EKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSKLELKQQWYIIDAEDKCLGRLATKVANLLTGKNKSIFTPAQDIGDCIIITNADKINVTGKKRTQKLYFRHSGRPGGKTIETFEDLQLRIPERIVEKAIKGMLPKNRLGRKLFTKLKVY 126
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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: D1GJR0_FUCVE (50S ribosomal protein L13, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR0_FUCVE)

HSP 1 Score: 179 bits (453), Expect = 1.310e-55
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIPSK  L+K+WYI DA +KCLGRLATE+  +LRGK K  + PAQD+   II+IN+ KV V+GKK  QK+YFRHSGRPGG  +E F+++Q R+PERILEKA+KGMLPKN+LGR+LF NLKVY
Sbjct:    1 MKDTFIPSKCDLKKQWYIADAKDKCLGRLATEVSNLLRGKGKTIFTPAQDVGDYIIIINADKVFVSGKKRIQKMYFRHSGRPGGKKIENFESIQIRIPERILEKAIKGMLPKNRLGRQLFTNLKVY 126
[Close]
BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A1I9LVW0_9PHAE (50S ribosomal protein L13, chloroplastic n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVW0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.730e-55
Identity = 81/126 (64.29%), Postives = 105/126 (83.33%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MK+TF+PSK  L++ WYIIDA +KCLGRL+T++  +LRGKNK  + P+QD+   II+IN++K+ V+GKK  QK+YFRHSGRPGG T+E F++LQ RLPERI+EKA+KGMLPKN LGR+LF  LKVY
Sbjct:    1 MKETFVPSKLDLKQHWYIIDAKDKCLGRLSTQVSNLLRGKNKTIFTPSQDIGDYIIIINANKIKVSGKKRLQKIYFRHSGRPGGKTIENFEDLQSRLPERIIEKAIKGMLPKNHLGRKLFTKLKVY 126
[Close]
BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: B7T1W2_VAULI (50S ribosomal protein L13, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W2_VAULI)

HSP 1 Score: 175 bits (444), Expect = 2.890e-54
Identity = 84/126 (66.67%), Postives = 101/126 (80.16%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MK+TFI S +SLQ +W+I DA  +CLGRLAT++  IL+GKNK FYNPAQ++   +I+IN+ K+ VTGKK+ QK Y RHSGRPGG  LE F+ L  RLPERILEKA+KGMLPKNKLGRRLF  LKVY
Sbjct:    1 MKNTFISSNTSLQSQWFIFDANEECLGRLATKVAIILQGKNKNFYNPAQNIGDFVIIINAEKIKVTGKKNLQKNYMRHSGRPGGKKLENFEQLHIRLPERILEKAIKGMLPKNKLGRRLFTKLKVY 126
[Close]
BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0F7E0_9PHAE (Ribosomal protein L13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7E0_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.960e-53
Identity = 79/126 (62.70%), Postives = 106/126 (84.13%), Query Frame = 1 
Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 378
            MKDTFIP+K  ++++WYIIDA ++CLGRLAT +  +LRGK KI + P+QD+   I++IN+ K++V+GKK  QK+YFRHSGRPGG T+E+F+ L+ RLPERI+EKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPTKLRVKQKWYIIDAKDQCLGRLATRVSNLLRGKKKILFTPSQDVGDYIVIINADKINVSGKKFIQKLYFRHSGRPGGKTIESFEKLKLRLPERIIEKAIKGMLPKNRLGRKLFTKLKVY 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6UA18_9STRA1.190e-83100.0050S ribosomal protein L13, chloroplastic n=1 Tax=S... [more]
A0A6B9TNL2_SARFS1.220e-5869.8450S ribosomal protein L13, chloroplastic n=13 Tax=... [more]
A0A7T8G5D9_SCYLO3.390e-5869.0550S ribosomal protein L13, chloroplastic n=5 Tax=E... [more]
A0A8F0F9Q3_9PHAE1.130e-5666.67Ribosomal protein L13 n=1 Tax=Chorda asiatica TaxI... [more]
A0A0R6ME26_UNDPI2.280e-5666.6750S ribosomal protein L13, chloroplastic n=27 Tax=... [more]
A0A8F0JZV9_9PHAE4.590e-5666.67Ribosomal protein L13 n=1 Tax=Desmarestia aculeata... [more]
D1GJR0_FUCVE1.310e-5567.4650S ribosomal protein L13, chloroplastic n=3 Tax=F... [more]
A0A1I9LVW0_9PHAE2.730e-5564.2950S ribosomal protein L13, chloroplastic n=2 Tax=E... [more]
B7T1W2_VAULI2.890e-5466.6750S ribosomal protein L13, chloroplastic n=1 Tax=V... [more]
A0A8F0F7E0_9PHAE2.960e-5362.70Ribosomal protein L13 n=1 Tax=Protohalopteris sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig191400contigH-elongata_contig191400:3..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.7
Seed ortholog evalue1.4e-44
Seed eggNOG ortholog2880.D1J730
Preferred namerpl13
KEGG rclassRC02795
KEGG koko:K02871,ko:K03504
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03010,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00178,M00179,M00262
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010467,GO:0015934,GO:0019538,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0070013,GO:0071704,GO:0097159,GO:0098798,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0102@1,KOG3203@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930093.0602984-CDS-H-elongata_contig191400:2..3801622930093.0602984-CDS-H-elongata_contig191400:2..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191400 3..380 -
1691679277.4927552-CDS-H-elongata_contig191400:2..3801691679277.4927552-CDS-H-elongata_contig191400:2..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig191400 3..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig191400.5291.1prot_H-elongata_contig191400.5291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig191400 3..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig191400.5291.1

>prot_H-elongata_contig191400.5291.1 ID=prot_H-elongata_contig191400.5291.1|Name=mRNA_H-elongata_contig191400.5291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQD
LEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPER
ILEKAVKGMLPKNKLGRRLFKNLKVY
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mRNA from alignment at H-elongata_contig191400:3..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig191400.5291.1 ID=mRNA_H-elongata_contig191400.5291.1|Name=mRNA_H-elongata_contig191400.5291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig191400:3..380- (Himanthalia elongata Himel1 dioecious)
ATGAAAGATACTTTTATTCCATCGAAAAGTTCTTTACAAAAAGAATGGTA
CATAATTGATGCAACAAACAAGTGTTTAGGTCGACTAGCTACAGAAATTG
TATATATTTTAAGAGGAAAAAACAAAATTTTTTATAATCCTGCTCAGGAT
TTAGAACAAATCATAATAGTGATTAATAGTAGTAAAGTTTCTGTTACAGG
AAAAAAATCTTTCCAAAAAGTTTATTTTCGTCATTCAGGTAGACCTGGTG
GAGATACATTGGAAACCTTTAAAAATTTACAAAAACGTTTACCTGAACGG
ATTTTAGAGAAAGCTGTTAAAGGAATGTTACCTAAAAATAAATTAGGTCG
TCGATTATTTAAAAATTTGAAAGTTTAT
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Coding sequence (CDS) from alignment at H-elongata_contig191400:3..380-

>mRNA_H-elongata_contig191400.5291.1 ID=mRNA_H-elongata_contig191400.5291.1|Name=mRNA_H-elongata_contig191400.5291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig191400:3..380- (Himanthalia elongata Himel1 dioecious)
ATGAAAGATACTTTTATTCCATCGAAAAGTTCTTTACAAAAAGAATGGTA
CATAATTGATGCAACAAACAAGTGTTTAGGTCGACTAGCTACAGAAATTG
TATATATTTTAAGAGGAAAAAACAAAATTTTTTATAATCCTGCTCAGGAT
TTAGAACAAATCATAATAGTGATTAATAGTAGTAAAGTTTCTGTTACAGG
AAAAAAATCTTTCCAAAAAGTTTATTTTCGTCATTCAGGTAGACCTGGTG
GAGATACATTGGAAACCTTTAAAAATTTACAAAAACGTTTACCTGAACGG
ATTTTAGAGAAAGCTGTTAAAGGAATGTTACCTAAAAATAAATTAGGTCG
TCGATTATTTAAAAATTTGAAAGTTTATATGAAAGATACTTTTATTCCAT
CGAAAAGTTCTTTACAAAAAGAATGGTACATAATTGATGCAACAAACAAG
TGTTTAGGTCGACTAGCTACAGAAATTGTATATATTTTAAGAGGAAAAAA
CAAAATTTTTTATAATCCTGCTCAGGATTTAGAACAAATCATAATAGTGA
TTAATAGTAGTAAAGTTTCTGTTACAGGAAAAAAATCTTTCCAAAAAGTT
TATTTTCGTCATTCAGGTAGACCTGGTGGAGATACATTGGAAACCTTTAA
AAATTTACAAAAACGTTTACCTGAACGGATTTTAGAGAAAGCTGTTAAAG
GAATGTTACCTAAAAATAAATTAGGTCGTCGATTATTTAAAAATTTGAAA
GTTTAT
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