prot_H-elongata_contig191400.5291.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig191400.5291.1
Unique Name	prot_H-elongata_contig191400.5291.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	126

Homology

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A7S6UA18_9STRA (50S ribosomal protein L13, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA18_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.190e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY
Sbjct:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A6B9TNL2_SARFS (50S ribosomal protein L13, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A6B9TNL2_SARFS)

HSP 1 Score: 186 bits (473), Expect = 1.220e-58
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPSK +L+K+WYIIDA NKCLGRLATEI  +LRGK K+ + P Q+L   II+IN+ K+ V+GKK  QKVYFRHSG PGG T+ETF++LQ R+PERILEKA+KGMLPKN+LGR+ FKNL+VY
Sbjct:    1 MKDTFIPSKQNLKKQWYIIDAKNKCLGRLATEISILLRGKKKVIFTPTQNLGDSIIIINAEKIFVSGKKRTQKVYFRHSGSPGGKTIETFEDLQMRIPERILEKAIKGMLPKNRLGRKFFKNLRVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A7T8G5D9_SCYLO (50S ribosomal protein L13, chloroplastic n=5 Tax=Ectocarpales TaxID=2877 RepID=A0A7T8G5D9_SCYLO)

HSP 1 Score: 185 bits (470), Expect = 3.390e-58
Identity = 87/126 (69.05%), Postives = 108/126 (85.71%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTF+PSK +L+++WYIIDA +KCLGRLATE+  +LRGKNK  + PAQD+   II+IN++K++VTGKK  QK+YFRHSGRPGG T+E F+ LQ RLPERI+EKAVKGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFVPSKLNLKQQWYIIDAKDKCLGRLATEVSNLLRGKNKTIFTPAQDIGDYIIIINANKINVTGKKRSQKIYFRHSGRPGGKTVENFEELQLRLPERIIEKAVKGMLPKNRLGRKLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0F9Q3_9PHAE (Ribosomal protein L13 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9Q3_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.130e-56
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPS+ +L+++WY+IDA NKCLGRLATE+  +LRGK K  + P+QD+   II+IN++K++VTGKK  +K+YFRHSGRPGG T+ETF++LQ R+PERILEKAV+GMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSQLNLKQQWYLIDAQNKCLGRLATEVSTLLRGKKKAIFTPSQDVGDYIIIINANKINVTGKKQNKKIYFRHSGRPGGKTIETFEDLQLRIPERILEKAVRGMLPKNRLGRKLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A0R6ME26_UNDPI (50S ribosomal protein L13, chloroplastic n=27 Tax=Laminariales TaxID=2886 RepID=A0A0R6ME26_UNDPI)

HSP 1 Score: 181 bits (458), Expect = 2.280e-56
Identity = 84/126 (66.67%), Postives = 109/126 (86.51%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPSK  L+++WYIIDA +KCLGRLATE+  +LRGKNK  + P+QD+   II++N+S+++V+GKK  QK+YFRHSGRPGG T+E+F++LQ R+PERILEKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSKLDLKQQWYIIDAKDKCLGRLATEVSNLLRGKNKSIFTPSQDVGDYIIIVNASQINVSGKKRVQKLYFRHSGRPGGKTVESFEDLQIRIPERILEKAIKGMLPKNRLGRKLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0JZV9_9PHAE (Ribosomal protein L13 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZV9_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 4.590e-56
Identity = 84/126 (66.67%), Postives = 106/126 (84.13%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPSK  L+++WYIIDA +KCLGRLAT++  +L GKNK  + PAQD+   II+ N+ K++VTGKK  QK+YFRHSGRPGG T+ETF++LQ R+PERI+EKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPSKLELKQQWYIIDAEDKCLGRLATKVANLLTGKNKSIFTPAQDIGDCIIITNADKINVTGKKRTQKLYFRHSGRPGGKTIETFEDLQLRIPERIVEKAIKGMLPKNRLGRKLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: D1GJR0_FUCVE (50S ribosomal protein L13, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR0_FUCVE)

HSP 1 Score: 179 bits (453), Expect = 1.310e-55
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIPSK  L+K+WYI DA +KCLGRLATE+  +LRGK K  + PAQD+   II+IN+ KV V+GKK  QK+YFRHSGRPGG  +E F+++Q R+PERILEKA+KGMLPKN+LGR+LF NLKVY
Sbjct:    1 MKDTFIPSKCDLKKQWYIADAKDKCLGRLATEVSNLLRGKGKTIFTPAQDVGDYIIIINADKVFVSGKKRIQKMYFRHSGRPGGKKIENFESIQIRIPERILEKAIKGMLPKNRLGRQLFTNLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A1I9LVW0_9PHAE (50S ribosomal protein L13, chloroplastic n=2 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVW0_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 2.730e-55
Identity = 81/126 (64.29%), Postives = 105/126 (83.33%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MK+TF+PSK  L++ WYIIDA +KCLGRL+T++  +LRGKNK  + P+QD+   II+IN++K+ V+GKK  QK+YFRHSGRPGG T+E F++LQ RLPERI+EKA+KGMLPKN LGR+LF  LKVY
Sbjct:    1 MKETFVPSKLDLKQHWYIIDAKDKCLGRLSTQVSNLLRGKNKTIFTPSQDIGDYIIIINANKIKVSGKKRLQKIYFRHSGRPGGKTIENFEDLQSRLPERIIEKAIKGMLPKNHLGRKLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: B7T1W2_VAULI (50S ribosomal protein L13, chloroplastic n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T1W2_VAULI)

HSP 1 Score: 175 bits (444), Expect = 2.890e-54
Identity = 84/126 (66.67%), Postives = 101/126 (80.16%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MK+TFI S +SLQ +W+I DA  +CLGRLAT++  IL+GKNK FYNPAQ++   +I+IN+ K+ VTGKK+ QK Y RHSGRPGG  LE F+ L  RLPERILEKA+KGMLPKNKLGRRLF  LKVY
Sbjct:    1 MKNTFISSNTSLQSQWFIFDANEECLGRLATKVAIILQGKNKNFYNPAQNIGDFVIIINAEKIKVTGKKNLQKNYMRHSGRPGGKKLENFEQLHIRLPERILEKAIKGMLPKNKLGRRLFTKLKVY 126

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BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Match: A0A8F0F7E0_9PHAE (Ribosomal protein L13 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7E0_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 2.960e-53
Identity = 79/126 (62.70%), Postives = 106/126 (84.13%), Query Frame = 0

Query:    1 MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQDLEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPERILEKAVKGMLPKNKLGRRLFKNLKVY 126
            MKDTFIP+K  ++++WYIIDA ++CLGRLAT +  +LRGK KI + P+QD+   I++IN+ K++V+GKK  QK+YFRHSGRPGG T+E+F+ L+ RLPERI+EKA+KGMLPKN+LGR+LF  LKVY
Sbjct:    1 MKDTFIPTKLRVKQKWYIIDAKDQCLGRLATRVSNLLRGKKKILFTPSQDVGDYIVIINADKINVSGKKFIQKLYFRHSGRPGGKTIESFEKLKLRLPERIIEKAIKGMLPKNRLGRKLFTKLKVY 126

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot

BLAST of mRNA_H-elongata_contig191400.5291.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S6UA18_9STRA	1.190e-83	100.00	50S ribosomal protein L13, chloroplastic n=1 Tax=S...	[more]
A0A6B9TNL2_SARFS	1.220e-58	69.84	50S ribosomal protein L13, chloroplastic n=13 Tax=...	[more]
A0A7T8G5D9_SCYLO	3.390e-58	69.05	50S ribosomal protein L13, chloroplastic n=5 Tax=E...	[more]
A0A8F0F9Q3_9PHAE	1.130e-56	66.67	Ribosomal protein L13 n=1 Tax=Chorda asiatica TaxI...	[more]
A0A0R6ME26_UNDPI	2.280e-56	66.67	50S ribosomal protein L13, chloroplastic n=27 Tax=...	[more]
A0A8F0JZV9_9PHAE	4.590e-56	66.67	Ribosomal protein L13 n=1 Tax=Desmarestia aculeata...	[more]
D1GJR0_FUCVE	1.310e-55	67.46	50S ribosomal protein L13, chloroplastic n=3 Tax=F...	[more]
A0A1I9LVW0_9PHAE	2.730e-55	64.29	50S ribosomal protein L13, chloroplastic n=2 Tax=E...	[more]
B7T1W2_VAULI	2.890e-54	66.67	50S ribosomal protein L13, chloroplastic n=1 Tax=V...	[more]
A0A8F0F7E0_9PHAE	2.960e-53	62.70	Ribosomal protein L13 n=1 Tax=Protohalopteris sp. ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 15..126 e-value: 7.6E-41 score: 139.3
IPR005822	Ribosomal protein L13	PIRSF	PIRSF002181	RPL13p_RPL13Aa_RPL16e_RPL13o	coord: 1..126 e-value: 4.3E-41 score: 138.3
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 11..126
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 16..126 score: 20.358
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 5..126 e-value: 3.4E-48 score: 161.0
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10		coord: 2..126 e-value: 1.3E-46 score: 159.8
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 3..126
None	No IPR available	PANTHER	PTHR11545:SF12		coord: 11..126

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig191400	contig	H-elongata_contig191400:3..380 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig191400.5291.1	mRNA_H-elongata_contig191400.5291.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig191400 3..380 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig191400.5291.1 ID=prot_H-elongata_contig191400.5291.1|Name=mRNA_H-elongata_contig191400.5291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MKDTFIPSKSSLQKEWYIIDATNKCLGRLATEIVYILRGKNKIFYNPAQD
LEQIIIVINSSKVSVTGKKSFQKVYFRHSGRPGGDTLETFKNLQKRLPER
ILEKAVKGMLPKNKLGRRLFKNLKVY

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005822	Ribosomal_L13
IPR005823	Ribosomal_L13_bac-type
IPR036899	Ribosomal_L13_sf