mRNA_H-elongata_contig190802.5270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig190802.5270.1
Unique NamemRNA_H-elongata_contig190802.5270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig190802.5270.1 vs. uniprot
Match: D7G276_ECTSI (Mitochondrial import inner membrane translocase subunit TIM23 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G276_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.910e-17
Identity = 36/51 (70.59%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 ATFYTCFESLLDHYEVDQLAPVQQMGMEDVINPLLAGASTGLLYKSAGEKR 153
            AT+YTC E+LLDH+EVDQ+ PVQQ G+ ++INPLLAGASTGLLYKS+   R
Sbjct:  123 ATYYTCAETLLDHFEVDQMGPVQQAGLGEIINPLLAGASTGLLYKSSAGPR 173
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BLAST of mRNA_H-elongata_contig190802.5270.1 vs. uniprot
Match: A0A7S1XNQ0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNQ0_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 1.730e-5
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:    1 ATFYTCFESLLDHYEVDQLAPVQQMGMEDVINPLLAGASTGLLYKSAGEKR 153
            A FY+ F +L D Y VD      Q+G+ D +NP+L+GASTGLLYKS    R
Sbjct:  113 ALFYSGFLALYDGYNVDM-----QLGVGDWVNPVLSGASTGLLYKSTAGPR 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig190802.5270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G276_ECTSI1.910e-1770.59Mitochondrial import inner membrane translocase su... [more]
A0A7S1XNQ0_9STRA1.730e-550.98Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig190802contigH-elongata_contig190802:238..390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue2.5e-13
Seed eggNOG ortholog2880.D7G276
Preferred nameTIMM23
KEGG rclassRC00034
KEGG koko:K00430,ko:K17794
KEGG TC3.A.8.1
KEGG ReactionR00602,R02596,R03919,R04007,R07443
KEGG Pathwayko00940,ko01100,ko01110,ko04212,map00940,map01100,map01110,map04212
GOsGO:0001101,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005758,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009893,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010604,GO:0010628,GO:0010954,GO:0014070,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019222,GO:0019866,GO:0019899,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030162,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032592,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042221,GO:0042277,GO:0042719,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045862,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0061024,GO:0065002,GO:0065007,GO:0070013,GO:0070585,GO:0070613,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097066,GO:0098573,GO:0098796,GO:0098798,GO:0098800,GO:1901698,GO:1901700,GO:1903317,GO:1903319,GO:1904680,GO:1905242,GO:1990351,GO:1990542
EggNOG free text desc.protein import into mitochondrial matrix
EggNOG OGsCOG5596@1,KOG3324@2759
EC1.11.1.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930091.3311641-CDS-H-elongata_contig190802:237..3901622930091.3311641-CDS-H-elongata_contig190802:237..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190802 238..390 -
1691679276.8906496-CDS-H-elongata_contig190802:237..3901691679276.8906496-CDS-H-elongata_contig190802:237..390Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig190802 238..390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig190802.5270.1prot_H-elongata_contig190802.5270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig190802 238..390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig190802.5270.1

>prot_H-elongata_contig190802.5270.1 ID=prot_H-elongata_contig190802.5270.1|Name=mRNA_H-elongata_contig190802.5270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
ATFYTCFESLLDHYEVDQLAPVQQMGMEDVINPLLAGASTGLLYKSAGEK
R
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mRNA from alignment at H-elongata_contig190802:238..390-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig190802.5270.1 ID=mRNA_H-elongata_contig190802.5270.1|Name=mRNA_H-elongata_contig190802.5270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig190802:238..390- (Himanthalia elongata Himel1 dioecious)
GCCACGTTCTACACGTGCTTCGAGTCCTTGCTAGACCACTACGAGGTGGA
TCAGCTCGCCCCGGTGCAGCAGATGGGGATGGAAGACGTCATCAACCCCT
TGTTAGCGGGCGCGTCGACGGGTCTTCTGTACAAGAGCGCCGGTGAGAAG
CGC
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Coding sequence (CDS) from alignment at H-elongata_contig190802:238..390-

>mRNA_H-elongata_contig190802.5270.1 ID=mRNA_H-elongata_contig190802.5270.1|Name=mRNA_H-elongata_contig190802.5270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig190802:238..390- (Himanthalia elongata Himel1 dioecious)
GCCACGTTCTACACGTGCTTCGAGTCCTTGCTAGACCACTACGAGGTGGA
TCAGCTCGCCCCGGTGCAGCAGATGGGGATGGAAGACGTCATCAACCCCT
TGTTAGCGGGCGCGTCGACGGGTCTTCTGTACAAGAGCGCCGGTGAGAAG
CGCGCCACGTTCTACACGTGCTTCGAGTCCTTGCTAGACCACTACGAGGT
GGATCAGCTCGCCCCGGTGCAGCAGATGGGGATGGAAGACGTCATCAACC
CCTTGTTAGCGGGCGCGTCGACGGGTCTTCTGTACAAGAGCGCCGGTGAG
AAGCGC
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